Wall clock time and date at job start Tue Mar 31 2020 12:17:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42895 * 1
3 3 C 1.42899 * 113.99679 * 2 1
4 4 H 1.08999 * 109.47726 * 29.99314 * 3 2 1
5 5 C 1.53005 * 109.46980 * 269.99471 * 3 2 1
6 6 C 1.50704 * 109.47131 * 65.00259 * 5 3 2
7 7 C 1.38228 * 119.99995 * 89.99778 * 6 5 3
8 8 C 1.38237 * 119.99946 * 179.97438 * 7 6 5
9 9 C 1.38237 * 119.99732 * 359.97438 * 8 7 6
10 10 C 1.38229 * 120.00029 * 0.27904 * 9 8 7
11 11 C 1.38231 * 120.00197 * 359.53474 * 10 9 8
12 12 C 1.53002 * 109.47200 * 149.99753 * 3 2 1
13 13 N 1.46891 * 109.47089 * 293.45290 * 12 3 2
14 14 C 1.46905 * 110.99839 * 77.71120 * 13 12 3
15 15 C 1.50700 * 109.47053 * 195.41680 * 14 13 12
16 16 H 1.08002 * 120.00344 * 359.97438 * 15 14 13
17 17 C 1.37878 * 119.99859 * 180.02562 * 15 14 13
18 18 N 1.31509 * 120.00450 * 359.97438 * 17 15 14
19 19 Si 1.86805 * 119.99612 * 180.02562 * 17 15 14
20 20 H 1.48501 * 109.47416 * 60.00078 * 19 17 15
21 21 H 1.48501 * 109.46647 * 179.97438 * 19 17 15
22 22 H 1.48494 * 109.47336 * 299.99631 * 19 17 15
23 23 C 1.46905 * 111.00115 * 201.66391 * 13 12 3
24 24 C 1.52999 * 109.46647 * 75.91820 * 23 13 12
25 25 C 1.53006 * 109.46861 * 183.59499 * 24 23 13
26 26 C 1.53000 * 109.47170 * 174.99934 * 25 24 23
27 27 C 1.52996 * 109.47228 * 295.00174 * 25 24 23
28 28 H 1.08998 * 109.47916 * 299.99969 * 1 2 3
29 29 H 1.09000 * 109.47454 * 60.00788 * 1 2 3
30 30 H 1.09008 * 109.46736 * 180.02562 * 1 2 3
31 31 H 1.08997 * 109.47290 * 305.00072 * 5 3 2
32 32 H 1.09001 * 109.47038 * 185.00142 * 5 3 2
33 33 H 1.08004 * 120.00236 * 0.02562 * 7 6 5
34 34 H 1.07999 * 120.00262 * 180.02562 * 8 7 6
35 35 H 1.08006 * 119.99501 * 180.02562 * 9 8 7
36 36 H 1.08003 * 120.00141 * 179.72251 * 10 9 8
37 37 H 1.08003 * 120.00416 * 180.23354 * 11 10 9
38 38 H 1.09002 * 109.46859 * 53.45558 * 12 3 2
39 39 H 1.09003 * 109.47214 * 173.45281 * 12 3 2
40 40 H 1.08987 * 109.47301 * 315.41733 * 14 13 12
41 41 H 1.09000 * 109.47034 * 75.41864 * 14 13 12
42 42 H 0.97000 * 120.00408 * 180.02562 * 18 17 15
43 43 H 1.08997 * 109.47251 * 195.91646 * 23 13 12
44 44 H 1.08997 * 109.47403 * 315.91771 * 23 13 12
45 45 H 1.09001 * 109.47032 * 303.59213 * 24 23 13
46 46 H 1.08994 * 109.47494 * 63.59728 * 24 23 13
47 47 H 1.09000 * 109.47183 * 55.00001 * 25 24 23
48 48 H 1.09000 * 109.47013 * 59.99963 * 26 25 24
49 49 H 1.09000 * 109.47218 * 179.97438 * 26 25 24
50 50 H 1.09001 * 109.46769 * 300.00127 * 26 25 24
51 51 H 1.09004 * 109.47398 * 59.99444 * 27 25 24
52 52 H 1.09000 * 109.47210 * 180.02562 * 27 25 24
53 53 H 1.09000 * 109.46898 * 300.00002 * 27 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0101 1.3055 0.0000
4 1 1.3448 1.9995 0.5137
5 6 2.2176 1.7713 -1.4426
6 6 0.8791 1.9308 -2.1164
7 6 0.2191 3.1442 -2.0638
8 6 -1.0085 3.2906 -2.6824
9 6 -1.5756 2.2238 -3.3540
10 6 -0.9180 1.0089 -3.4021
11 6 0.3113 0.8635 -2.7868
12 6 3.3588 1.2634 0.7213
13 7 3.1440 0.9688 2.1443
14 6 2.8755 -0.4606 2.3513
15 6 2.2954 -0.6687 3.7265
16 1 2.1419 0.1762 4.3814
17 6 1.9615 -1.9380 4.1490
18 7 2.1489 -2.9670 3.3518
19 14 1.2418 -2.1958 5.8534
20 1 -0.0257 -1.4319 5.9763
21 1 0.9705 -3.6408 6.0627
22 1 2.2077 -1.7199 6.8759
23 6 4.2881 1.4120 2.9522
24 6 4.2419 2.9331 3.1105
25 6 5.4806 3.4041 3.8752
26 6 5.4982 4.9332 3.9253
27 6 5.4427 2.8475 5.2998
28 1 -0.3635 0.5138 0.8899
29 1 -0.3634 0.5137 -0.8900
30 1 -0.3633 -1.0278 0.0005
31 1 2.8099 1.0319 -1.9815
32 1 2.7413 2.7273 -1.4439
33 1 0.6628 3.9781 -1.5402
34 1 -1.5240 4.2388 -2.6417
35 1 -2.5346 2.3383 -3.8376
36 1 -1.3632 0.1740 -3.9230
37 1 0.8269 -0.0846 -2.8276
38 1 3.9829 0.4866 0.2796
39 1 3.8548 2.2288 0.6210
40 1 2.1660 -0.8094 1.6011
41 1 3.8055 -1.0218 2.2605
42 1 1.9137 -3.8599 3.6489
43 1 4.2424 0.9429 3.9350
44 1 5.2156 1.1263 2.4561
45 1 4.2232 3.4004 2.1259
46 1 3.3453 3.2138 3.6630
47 1 6.3775 3.0468 3.3693
48 1 4.6012 5.2904 4.4312
49 1 6.3804 5.2687 4.4705
50 1 5.5252 5.3296 2.9103
51 1 5.4301 1.7581 5.2642
52 1 6.3249 3.1834 5.8448
53 1 4.5457 3.2048 5.8057
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001191368009.mol2 53
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:17:43
Heat of formation + Delta-G solvation = -50.847916 kcal
Electronic energy + Delta-G solvation = -28023.557115 eV
Core-core repulsion = 24472.954079 eV
Total energy + Delta-G solvation = -3550.603035 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 319.225 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-40.75730 -39.35061 -38.15299 -36.46085 -34.70920 -34.02825 -31.80866 -31.27825
-30.28347 -28.41481 -27.92166 -27.12665 -26.14858 -24.28844 -23.41915 -23.10306
-21.67354 -21.45478 -20.73142 -18.46948 -17.62970 -17.62380 -16.90092 -16.68140
-16.37844 -16.04221 -15.83075 -15.59960 -15.56263 -15.11976 -14.86728 -14.47261
-14.23679 -14.07782 -13.91578 -13.75471 -13.63109 -13.48277 -13.32522 -13.03227
-12.96725 -12.73124 -12.68004 -12.61171 -12.38052 -12.31163 -12.10965 -11.92900
-11.90850 -11.72625 -11.58914 -11.45762 -11.39698 -11.21308 -11.02711 -10.66616
-10.31009 -9.73455 -9.30058 -8.90056 -8.11197 -6.18903 0.48147 0.54282
1.38738 1.41756 1.49347 2.42738 2.87825 3.01366 3.21060 3.32853
3.81816 4.01661 4.03629 4.07676 4.17798 4.21227 4.27488 4.30655
4.36529 4.40055 4.46063 4.53395 4.55307 4.65179 4.69182 4.70573
4.72559 4.79833 4.85560 4.86589 4.89076 4.90578 4.94083 5.05002
5.11288 5.12687 5.20821 5.22103 5.25540 5.28060 5.33010 5.44583
5.54896 5.60518 5.62804 5.65509 5.67238 5.77298 5.78038 6.16963
6.22478 6.44493 6.56673 6.77425 6.98192 7.48065 8.99037
Molecular weight = 319.23amu
Principal moments of inertia in cm(-1)
A = 0.008848 B = 0.004277 C = 0.003120
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3163.922572 B = 6545.228792 C = 8972.713690
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 O -0.390 6.390
3 C 0.108 3.892
4 H 0.059 0.941
5 C -0.096 4.096
6 C -0.090 4.090
7 C -0.127 4.127
8 C -0.125 4.125
9 C -0.130 4.130
10 C -0.131 4.131
11 C -0.122 4.122
12 C 0.056 3.944
13 N -0.538 5.538
14 C 0.197 3.803
15 C -0.512 4.512
16 H 0.054 0.946
17 C 0.003 3.997
18 N -0.933 5.933
19 Si 0.958 3.042
20 H -0.270 1.270
21 H -0.284 1.284
22 H -0.270 1.270
23 C 0.062 3.938
24 C -0.094 4.094
25 C -0.093 4.093
26 C -0.138 4.138
27 C -0.149 4.149
28 H 0.022 0.978
29 H 0.071 0.929
30 H 0.067 0.933
31 H 0.073 0.927
32 H 0.103 0.897
33 H 0.134 0.866
34 H 0.143 0.857
35 H 0.142 0.858
36 H 0.135 0.865
37 H 0.113 0.887
38 H 0.016 0.984
39 H 0.104 0.896
40 H 0.052 0.948
41 H -0.060 1.060
42 H 0.260 0.740
43 H 0.054 0.946
44 H 0.014 0.986
45 H 0.069 0.931
46 H 0.055 0.945
47 H 0.067 0.933
48 H 0.053 0.947
49 H 0.063 0.937
50 H 0.061 0.939
51 H 0.037 0.963
52 H 0.065 0.935
53 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.208 16.334 -10.619 19.519
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.309 6.309
3 C 0.050 3.950
4 H 0.077 0.923
5 C -0.134 4.134
6 C -0.090 4.090
7 C -0.145 4.145
8 C -0.143 4.143
9 C -0.147 4.147
10 C -0.149 4.149
11 C -0.140 4.140
12 C -0.072 4.072
13 N -0.262 5.262
14 C 0.071 3.929
15 C -0.551 4.551
16 H 0.072 0.928
17 C -0.195 4.195
18 N -0.574 5.574
19 Si 0.783 3.217
20 H -0.195 1.195
21 H -0.209 1.209
22 H -0.195 1.195
23 C -0.066 4.066
24 C -0.132 4.132
25 C -0.113 4.113
26 C -0.196 4.196
27 C -0.206 4.206
28 H 0.041 0.959
29 H 0.089 0.911
30 H 0.086 0.914
31 H 0.091 0.909
32 H 0.121 0.879
33 H 0.152 0.848
34 H 0.161 0.839
35 H 0.160 0.840
36 H 0.153 0.847
37 H 0.131 0.869
38 H 0.034 0.966
39 H 0.122 0.878
40 H 0.070 0.930
41 H -0.042 1.042
42 H 0.069 0.931
43 H 0.072 0.928
44 H 0.033 0.967
45 H 0.088 0.912
46 H 0.074 0.926
47 H 0.086 0.914
48 H 0.072 0.928
49 H 0.082 0.918
50 H 0.080 0.920
51 H 0.056 0.944
52 H 0.084 0.916
53 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -1.527 16.234 -10.461 19.373
hybrid contribution 0.242 -1.391 0.720 1.585
sum -1.285 14.843 -9.741 17.800
Atomic orbital electron populations
1.22972 0.81402 1.01902 1.00292 1.87962 1.19979 1.28418 1.94517
1.22089 0.94442 0.84649 0.93810 0.92312 1.21112 0.94629 1.03166
0.94479 1.19915 0.96768 0.94252 0.98056 1.21299 0.95971 0.97131
1.00101 1.21444 0.95459 0.99911 0.97481 1.21449 1.00701 0.92932
0.99654 1.21389 0.95007 0.98613 0.99906 1.21151 0.96576 0.98418
0.97845 1.22288 0.95378 1.00735 0.88801 1.62059 1.38653 1.19654
1.05786 1.19742 0.93326 0.82626 0.97185 1.21429 1.40577 0.92497
1.00584 0.92781 1.25793 0.96638 0.95774 1.01249 1.70106 1.49981
0.99294 1.38028 0.85614 0.79115 0.76887 0.80054 1.19526 1.20933
1.19474 1.22078 0.90332 0.96695 0.97487 1.21541 0.97980 0.93210
1.00430 1.21092 0.97583 0.96788 0.95787 1.21770 1.02012 0.93599
1.02179 1.21875 1.01815 1.00225 0.96678 0.95900 0.91051 0.91430
0.90852 0.87911 0.84783 0.83940 0.84007 0.84742 0.86859 0.96557
0.87841 0.93031 1.04240 0.93104 0.92768 0.96740 0.91241 0.92632
0.91444 0.92811 0.91829 0.91982 0.94400 0.91579 0.93042
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 1.11 10.23 113.37 1.16 2.27 16
2 O -0.39 -16.00 7.34 -148.98 -1.09 -17.10 16
3 C 0.11 3.65 2.54 30.60 0.08 3.73 16
4 H 0.06 2.04 7.79 -2.39 -0.02 2.02 16
5 C -0.10 -2.46 5.06 29.85 0.15 -2.31 16
6 C -0.09 -2.21 3.89 -19.87 -0.08 -2.29 16
7 C -0.13 -2.70 9.70 22.27 0.22 -2.49 16
8 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16
9 C -0.13 -2.40 10.05 22.27 0.22 -2.17 16
10 C -0.13 -2.76 9.94 22.27 0.22 -2.54 16
11 C -0.12 -3.03 6.79 22.27 0.15 -2.88 16
12 C 0.06 2.04 4.64 86.31 0.40 2.44 16
13 N -0.54 -23.73 4.30 -900.81 -3.87 -27.60 16
14 C 0.20 10.99 4.51 85.56 0.39 11.38 16
15 C -0.51 -30.21 8.33 25.60 0.21 -30.00 16
16 H 0.05 3.15 7.67 -2.91 -0.02 3.13 16
17 C 0.00 0.17 5.46 84.66 0.46 0.63 16
18 N -0.93 -58.44 13.29 21.45 0.28 -58.16 16
19 Si 0.96 46.04 29.54 68.60 2.03 48.06 16
20 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16
21 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16
22 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16
23 C 0.06 2.44 4.46 86.30 0.38 2.83 16
24 C -0.09 -2.79 4.83 30.60 0.15 -2.64 16
25 C -0.09 -2.31 2.92 -10.79 -0.03 -2.34 16
26 C -0.14 -2.65 9.19 71.98 0.66 -1.99 16
27 C -0.15 -3.93 8.95 71.98 0.64 -3.28 16
28 H 0.02 0.87 8.08 -2.39 -0.02 0.85 16
29 H 0.07 2.21 3.84 -2.39 -0.01 2.20 16
30 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16
31 H 0.07 1.95 8.09 -2.39 -0.02 1.93 16
32 H 0.10 2.08 8.09 -2.39 -0.02 2.06 16
33 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16
34 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16
35 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16
36 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16
37 H 0.11 3.00 8.06 -2.91 -0.02 2.98 16
38 H 0.02 0.64 7.97 -2.39 -0.02 0.62 16
39 H 0.10 2.98 6.45 -2.39 -0.02 2.96 16
40 H 0.05 3.08 5.06 -2.39 -0.01 3.07 16
41 H -0.06 -3.76 8.06 -2.39 -0.02 -3.78 16
42 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16
43 H 0.05 2.45 5.60 -2.39 -0.01 2.43 16
44 H 0.01 0.56 8.00 -2.39 -0.02 0.54 16
45 H 0.07 1.83 6.70 -2.39 -0.02 1.81 16
46 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16
47 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16
48 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16
49 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16
50 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16
51 H 0.04 1.17 6.65 -2.39 -0.02 1.16 16
52 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16
53 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16
Total: -1.00 -69.80 409.10 3.80 -66.01
By element:
Atomic # 1 Polarization: 21.72 SS G_CDS: 0.84 Total: 22.56 kcal
Atomic # 6 Polarization: -39.39 SS G_CDS: 5.62 Total: -33.77 kcal
Atomic # 7 Polarization: -82.17 SS G_CDS: -3.59 Total: -85.76 kcal
Atomic # 8 Polarization: -16.00 SS G_CDS: -1.09 Total: -17.10 kcal
Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal
Total: -69.80 3.80 -66.01 kcal
The number of atoms in the molecule is 53
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001191368009.mol2 53
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.158 kcal
(2) G-P(sol) polarization free energy of solvation -69.805 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.646 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.798 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.006 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.848 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds