Wall clock time and date at job start Tue Mar 31 2020 12:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47012 * 2 1 4 4 C 1.52996 * 109.47383 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47383 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.47072 * 180.02562 * 5 4 3 7 7 O 1.42905 * 109.46862 * 180.02562 * 6 5 4 8 8 C 1.35902 * 116.99590 * 179.97438 * 7 6 5 9 9 C 1.38749 * 120.05652 * 359.97438 * 8 7 6 10 10 C 1.38127 * 119.94087 * 180.02562 * 9 8 7 11 11 C 1.38287 * 120.05641 * 359.97438 * 10 9 8 12 12 C 1.38241 * 120.11145 * 0.02562 * 11 10 9 13 13 C 1.38161 * 120.05710 * 359.97438 * 12 11 10 14 14 C 1.50703 * 120.02841 * 179.97438 * 13 12 11 15 15 N 1.46900 * 109.47446 * 265.46819 * 14 13 12 16 16 C 1.46900 * 110.99851 * 287.45012 * 15 14 13 17 17 C 1.53007 * 109.47069 * 295.38999 * 16 15 14 18 18 C 1.46901 * 110.99901 * 163.49466 * 15 14 13 19 19 C 1.50697 * 109.46983 * 191.41113 * 18 15 14 20 20 H 1.07999 * 119.99999 * 5.39134 * 19 18 15 21 21 C 1.37873 * 119.99977 * 185.40130 * 19 18 15 22 22 N 1.31513 * 120.00194 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99964 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47247 * 90.00541 * 23 21 19 25 25 H 1.48504 * 109.47238 * 210.00490 * 23 21 19 26 26 H 1.48500 * 109.47156 * 330.00488 * 23 21 19 27 27 H 1.08992 * 109.47642 * 59.99988 * 1 2 3 28 28 H 1.09007 * 109.46985 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47135 * 299.99502 * 1 2 3 30 30 H 1.09000 * 109.47135 * 240.00498 * 2 1 3 31 31 H 1.09005 * 109.47445 * 120.00316 * 2 1 3 32 32 H 1.09006 * 109.47172 * 60.00138 * 3 2 1 33 33 H 1.09005 * 109.47273 * 300.00421 * 3 2 1 34 34 H 1.09006 * 109.46810 * 59.99970 * 4 3 2 35 35 H 1.08996 * 109.47445 * 300.00668 * 4 3 2 36 36 H 1.08993 * 109.46963 * 60.00008 * 5 4 3 37 37 H 1.08998 * 109.47079 * 299.99807 * 5 4 3 38 38 H 1.09000 * 109.47438 * 60.00275 * 6 5 4 39 39 H 1.08998 * 109.46634 * 299.99617 * 6 5 4 40 40 H 1.08002 * 120.03097 * 0.02562 * 9 8 7 41 41 H 1.08005 * 119.96781 * 179.72868 * 10 9 8 42 42 H 1.07996 * 119.93935 * 179.97438 * 11 10 9 43 43 H 1.08001 * 119.96919 * 179.97438 * 12 11 10 44 44 H 1.08994 * 109.46783 * 25.47159 * 14 13 12 45 45 H 1.09010 * 109.46693 * 145.46837 * 14 13 12 46 46 H 1.09001 * 109.47433 * 55.38674 * 16 15 14 47 47 H 1.08998 * 109.46819 * 175.39512 * 16 15 14 48 48 H 1.09001 * 109.46753 * 56.00125 * 17 16 15 49 49 H 1.09004 * 109.46914 * 175.99978 * 17 16 15 50 50 H 1.08999 * 109.46758 * 296.00019 * 17 16 15 51 51 H 1.08995 * 109.46844 * 311.41099 * 18 15 14 52 52 H 1.09003 * 109.47020 * 71.41295 * 18 15 14 53 53 H 0.96996 * 120.00245 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0798 2.8851 0.0000 6 6 5.6099 2.8851 0.0000 7 8 6.0862 4.2324 0.0000 8 6 7.4335 4.4105 0.0005 9 6 8.2798 3.3110 0.0016 10 6 9.6488 3.4947 0.0027 11 6 10.1760 4.7731 0.0022 12 6 9.3349 5.8702 0.0011 13 6 7.9649 5.6918 0.0000 14 6 7.0486 6.8883 -0.0005 15 7 6.6628 7.2104 1.3798 16 6 5.7163 6.2184 1.9070 17 6 4.4130 6.2820 1.1079 18 6 6.1070 8.5673 1.4681 19 6 5.9849 8.9669 2.9160 20 1 6.3694 8.3185 3.6894 21 6 5.3821 10.1601 3.2534 22 7 5.2760 10.5091 4.5169 23 14 4.7175 11.2818 1.9156 24 1 3.3018 10.9322 1.6346 25 1 4.7982 12.6938 2.3683 26 1 5.5241 11.1110 0.6805 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6765 1.9564 -0.8900 34 1 3.9336 0.9286 -0.8892 35 1 3.9329 0.9288 0.8907 36 1 3.7161 3.3994 0.8895 37 1 3.7169 3.3983 -0.8904 38 1 5.9733 2.3709 -0.8898 39 1 5.9731 2.3717 0.8903 40 1 7.8685 2.3123 0.0016 41 1 10.3079 2.6391 0.0079 42 1 11.2467 4.9146 0.0034 43 1 9.7492 6.8676 0.0012 44 1 7.5646 7.7408 -0.4420 45 1 6.1559 6.6619 -0.5839 46 1 6.1481 5.2214 1.8189 47 1 5.5105 6.4340 2.9555 48 1 4.6285 6.1368 0.0494 49 1 3.7373 5.4989 1.4520 50 1 3.9449 7.2556 1.2533 51 1 6.7677 9.2647 0.9532 52 1 5.1222 8.5876 1.0013 53 1 4.8523 11.3487 4.7542 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204296062.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:03 Heat of formation + Delta-G solvation = -48.863728 kcal Electronic energy + Delta-G solvation = -27606.344057 eV Core-core repulsion = 24055.827062 eV Total energy + Delta-G solvation = -3550.516994 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.34749 -38.87158 -38.31802 -37.08544 -34.75142 -33.88410 -32.82415 -31.20264 -30.88025 -29.40580 -28.84262 -26.23448 -25.35128 -24.63148 -23.01129 -22.59227 -21.86964 -21.77940 -20.71958 -18.92577 -18.73573 -17.53654 -17.22138 -16.73677 -16.65864 -16.23500 -16.11565 -15.85536 -15.28456 -14.96748 -14.83480 -14.68755 -14.46181 -14.32378 -14.21761 -13.94552 -13.58125 -13.41035 -13.28936 -13.01028 -12.87557 -12.73413 -12.69558 -12.49136 -12.42047 -12.21053 -12.10555 -11.95232 -11.87032 -11.80808 -11.61316 -11.49143 -11.47322 -11.38943 -11.34239 -11.24599 -10.76435 -9.73981 -9.03977 -8.83003 -8.26843 -6.28777 0.46565 0.60166 1.32944 1.34671 1.46114 2.31198 2.34642 2.85198 3.06901 3.51728 3.80355 3.92144 3.93306 3.97794 4.07413 4.16220 4.19085 4.29135 4.35773 4.41338 4.42266 4.45691 4.49750 4.51839 4.61061 4.62456 4.71674 4.72088 4.79230 4.81073 4.85427 4.89896 4.95254 5.02113 5.06871 5.10310 5.13833 5.17878 5.21494 5.24442 5.30211 5.36890 5.45602 5.46680 5.50853 5.52542 5.57983 5.61967 5.73203 5.99248 6.04745 6.45795 6.59130 6.72495 6.77311 7.34555 8.90346 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.008607 B = 0.003731 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3252.436232 B = 7501.968704 C =10230.249941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.123 4.123 3 C -0.121 4.121 4 C -0.108 4.108 5 C -0.116 4.116 6 C 0.055 3.945 7 O -0.319 6.319 8 C 0.124 3.876 9 C -0.214 4.214 10 C -0.085 4.085 11 C -0.163 4.163 12 C -0.080 4.080 13 C -0.122 4.122 14 C 0.096 3.904 15 N -0.535 5.535 16 C 0.073 3.927 17 C -0.162 4.162 18 C 0.170 3.830 19 C -0.507 4.507 20 H 0.032 0.968 21 C 0.008 3.992 22 N -0.950 5.950 23 Si 0.944 3.056 24 H -0.268 1.268 25 H -0.280 1.280 26 H -0.250 1.250 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.146 0.854 41 H 0.151 0.849 42 H 0.143 0.857 43 H 0.127 0.873 44 H 0.071 0.929 45 H 0.045 0.955 46 H 0.078 0.922 47 H 0.036 0.964 48 H 0.064 0.936 49 H 0.064 0.936 50 H 0.030 0.970 51 H 0.023 0.977 52 H -0.005 1.005 53 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.349 -22.894 -15.093 27.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.161 4.161 3 C -0.158 4.158 4 C -0.145 4.145 5 C -0.154 4.154 6 C -0.020 4.020 7 O -0.233 6.233 8 C 0.078 3.922 9 C -0.232 4.232 10 C -0.103 4.103 11 C -0.181 4.181 12 C -0.099 4.099 13 C -0.123 4.123 14 C -0.031 4.031 15 N -0.258 5.258 16 C -0.055 4.055 17 C -0.220 4.220 18 C 0.043 3.957 19 C -0.546 4.546 20 H 0.051 0.949 21 C -0.188 4.188 22 N -0.591 5.591 23 Si 0.768 3.232 24 H -0.193 1.193 25 H -0.206 1.206 26 H -0.174 1.174 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.164 0.836 41 H 0.169 0.831 42 H 0.161 0.839 43 H 0.145 0.855 44 H 0.090 0.910 45 H 0.063 0.937 46 H 0.097 0.903 47 H 0.055 0.945 48 H 0.083 0.917 49 H 0.083 0.917 50 H 0.049 0.951 51 H 0.041 0.959 52 H 0.013 0.987 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.157 -22.627 -14.691 26.978 hybrid contribution -1.055 0.932 -0.234 1.427 sum -1.212 -21.695 -14.925 26.361 Atomic orbital electron populations 1.21799 0.95909 1.01900 1.01707 1.21520 0.95909 0.96318 1.02313 1.21602 0.94983 0.97294 1.01952 1.21448 0.95643 0.94456 1.03001 1.21561 0.92215 0.98577 1.03010 1.22983 0.95671 0.81358 1.01998 1.86202 1.18641 1.30231 1.88216 1.18929 0.82993 0.93653 0.96618 1.21445 0.94666 0.98075 1.09045 1.21267 0.94458 0.97886 0.96709 1.21302 1.00649 0.92268 1.03860 1.21062 0.91682 1.00081 0.97056 1.19259 0.94590 0.92108 1.06332 1.20897 0.96984 0.95312 0.89912 1.62126 1.42098 1.02592 1.19025 1.21869 0.91002 0.95247 0.97404 1.22139 0.98502 1.00357 1.01020 1.19974 0.93070 0.87253 0.95368 1.21207 1.36790 1.04400 0.92191 0.94918 1.25806 0.96100 0.99309 0.97629 1.70051 1.46186 1.24205 1.18662 0.85757 0.79449 0.77968 0.80047 1.19330 1.20595 1.17383 0.92788 0.92182 0.93137 0.91466 0.91874 0.92634 0.92072 0.90674 0.91264 0.91982 0.91432 0.90809 0.91672 0.83593 0.83106 0.83898 0.85540 0.91045 0.93738 0.90342 0.94538 0.91699 0.91701 0.95132 0.95927 0.98701 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.91 71.98 0.71 -1.14 16 2 C -0.12 -1.46 5.93 30.59 0.18 -1.28 16 3 C -0.12 -1.66 5.21 30.59 0.16 -1.50 16 4 C -0.11 -1.42 5.21 30.59 0.16 -1.26 16 5 C -0.12 -2.05 5.58 30.60 0.17 -1.88 16 6 C 0.05 1.04 4.74 71.98 0.34 1.38 16 7 O -0.32 -8.59 5.30 -92.45 -0.49 -9.08 16 8 C 0.12 3.50 5.65 22.51 0.13 3.63 16 9 C -0.21 -4.81 9.04 22.37 0.20 -4.61 16 10 C -0.09 -1.75 10.04 22.25 0.22 -1.52 16 11 C -0.16 -3.74 10.04 22.28 0.22 -3.52 16 12 C -0.08 -2.30 9.68 22.25 0.22 -2.08 16 13 C -0.12 -3.90 5.18 -19.77 -0.10 -4.00 16 14 C 0.10 3.52 4.86 85.56 0.42 3.93 16 15 N -0.54 -23.76 4.63 -905.35 -4.19 -27.96 16 16 C 0.07 3.03 5.31 86.31 0.46 3.49 16 17 C -0.16 -5.96 8.41 71.98 0.61 -5.36 16 18 C 0.17 8.56 3.55 85.56 0.30 8.86 16 19 C -0.51 -30.54 8.99 25.60 0.23 -30.31 16 20 H 0.03 2.21 7.65 -2.91 -0.02 2.19 16 21 C 0.01 0.50 5.47 84.65 0.46 0.96 16 22 N -0.95 -61.00 13.96 21.45 0.30 -60.70 16 23 Si 0.94 45.44 27.36 68.60 1.88 47.32 16 24 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 26 H -0.25 -11.25 6.70 99.48 0.67 -10.58 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.06 1.30 7.29 -2.39 -0.02 1.28 16 37 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.07 1.14 7.66 -2.39 -0.02 1.12 16 39 H 0.07 1.15 7.66 -2.39 -0.02 1.13 16 40 H 0.15 2.48 6.30 -2.91 -0.02 2.46 16 41 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 42 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 43 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 44 H 0.07 2.53 7.69 -2.39 -0.02 2.52 16 45 H 0.04 1.60 5.44 -2.38 -0.01 1.59 16 46 H 0.08 3.01 4.96 -2.39 -0.01 3.00 16 47 H 0.04 1.78 7.09 -2.39 -0.02 1.76 16 48 H 0.06 2.23 5.23 -2.39 -0.01 2.21 16 49 H 0.06 2.08 7.29 -2.39 -0.02 2.06 16 50 H 0.03 1.26 6.45 -2.39 -0.02 1.24 16 51 H 0.02 1.13 7.25 -2.39 -0.02 1.12 16 52 H 0.00 -0.23 5.13 -2.39 -0.01 -0.24 16 53 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -70.35 401.98 3.40 -66.95 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.82 Total: 19.67 kcal Atomic # 6 Polarization: -41.29 SS G_CDS: 5.09 Total: -36.20 kcal Atomic # 7 Polarization: -84.76 SS G_CDS: -3.89 Total: -88.66 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -0.49 Total: -9.08 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.88 Total: 47.32 kcal Total: -70.35 3.40 -66.95 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204296062.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.088 kcal (2) G-P(sol) polarization free energy of solvation -70.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds