Wall clock time and date at job start Tue Mar 31 2020 12:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30833 * 125.89764 * 2 1 4 4 N 1.40079 * 108.20638 * 180.26187 * 3 2 1 5 5 C 1.46501 * 126.04225 * 179.69992 * 4 3 2 6 6 C 1.34947 * 107.92486 * 359.72157 * 4 3 2 7 7 C 1.35317 * 107.74684 * 359.97438 * 6 4 3 8 8 C 1.50700 * 126.04263 * 179.97438 * 7 6 4 9 9 N 1.46897 * 109.47569 * 260.02987 * 8 7 6 10 10 C 1.46899 * 110.99699 * 66.04503 * 9 8 7 11 11 C 1.50705 * 109.47450 * 282.48901 * 10 9 8 12 12 H 1.07999 * 119.99782 * 354.60652 * 11 10 9 13 13 C 1.37878 * 120.00286 * 174.59694 * 11 10 9 14 14 N 1.31517 * 119.99951 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 119.99885 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.46852 * 89.99653 * 15 13 11 17 17 H 1.48500 * 109.47016 * 209.99800 * 15 13 11 18 18 H 1.48497 * 109.47097 * 329.99899 * 15 13 11 19 19 C 1.46891 * 111.00337 * 190.00103 * 9 8 7 20 20 C 1.53016 * 109.47144 * 290.01155 * 19 9 8 21 21 C 1.52985 * 109.46376 * 164.04468 * 20 19 9 22 22 C 1.52985 * 109.51290 * 315.98829 * 21 20 19 23 23 C 1.53007 * 109.47064 * 112.93299 * 22 21 20 24 24 C 1.53007 * 109.43090 * 284.04678 * 23 22 21 25 25 C 1.52977 * 109.48648 * 75.96177 * 24 23 22 26 26 C 1.52998 * 109.50825 * 247.06466 * 25 24 23 27 27 H 1.09000 * 109.46802 * 270.20730 * 1 2 3 28 28 H 1.08995 * 109.47199 * 30.20733 * 1 2 3 29 29 H 1.09006 * 109.46868 * 150.21024 * 1 2 3 30 30 H 1.08999 * 109.47290 * 270.02758 * 5 4 3 31 31 H 1.09005 * 109.47053 * 30.02441 * 5 4 3 32 32 H 1.08997 * 109.47699 * 150.02208 * 5 4 3 33 33 H 1.07998 * 126.12833 * 179.97438 * 6 4 3 34 34 H 1.08996 * 109.46893 * 140.02922 * 8 7 6 35 35 H 1.08999 * 109.46880 * 20.03134 * 8 7 6 36 36 H 1.08994 * 109.47539 * 42.49405 * 10 9 8 37 37 H 1.08999 * 109.47335 * 162.49274 * 10 9 8 38 38 H 0.96993 * 119.99784 * 180.02562 * 14 13 11 39 39 H 1.08996 * 109.47363 * 50.00502 * 19 9 8 40 40 H 1.09001 * 109.47219 * 284.04550 * 20 19 9 41 41 H 1.08999 * 109.47265 * 44.04453 * 20 19 9 42 42 H 1.09003 * 109.46933 * 195.97713 * 21 20 19 43 43 H 1.09000 * 109.46162 * 75.99693 * 21 20 19 44 44 H 1.09009 * 109.46497 * 352.93362 * 22 21 20 45 45 H 1.08994 * 109.47751 * 232.93449 * 22 21 20 46 46 H 1.08996 * 109.47848 * 164.06224 * 23 22 21 47 47 H 1.08994 * 109.48219 * 44.03813 * 23 22 21 48 48 H 1.09002 * 109.47261 * 315.95531 * 24 23 22 49 49 H 1.09001 * 109.46271 * 195.96395 * 24 23 22 50 50 H 1.09006 * 109.46575 * 127.05231 * 25 24 23 51 51 H 1.09004 * 109.46717 * 7.07307 * 25 24 23 52 52 H 1.09000 * 109.47251 * 284.01625 * 26 25 24 53 53 H 1.09002 * 109.48046 * 164.01032 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6342 -0.0061 5 6 4.7898 1.5008 -0.0143 6 6 3.6142 -0.7153 -0.0035 7 6 2.3271 -1.1330 0.0046 8 6 1.8599 -2.5658 0.0095 9 7 1.4723 -2.9591 -1.3517 10 6 2.6368 -2.9743 -2.2470 11 6 2.9872 -1.5621 -2.6397 12 1 2.3528 -0.7434 -2.3336 13 6 4.1177 -1.3153 -3.3893 14 7 4.4237 -0.0828 -3.7315 15 14 5.2147 -2.7315 -3.9190 16 1 4.7569 -3.2471 -5.2343 17 1 6.6165 -2.2552 -4.0347 18 1 5.1428 -3.8178 -2.9092 19 6 0.7925 -4.2613 -1.3500 20 6 1.8015 -5.3630 -1.0189 21 6 1.0533 -6.6385 -0.6270 22 6 -0.0969 -6.2863 0.3182 23 6 -1.4315 -6.5575 -0.3793 24 6 -1.7109 -5.4463 -1.3933 25 6 -0.8377 -5.6543 -2.6320 26 6 0.1870 -4.5225 -2.7307 27 1 -0.3633 0.0037 1.0277 28 1 -0.3633 0.8881 -0.5170 29 1 -0.3633 -0.8919 -0.5106 30 1 5.0771 1.7137 -1.0440 31 1 4.5591 2.4343 0.4990 32 1 5.6121 0.9993 0.4959 33 1 4.4891 -1.3485 -0.0072 34 1 1.0024 -2.6659 0.6747 35 1 2.6672 -3.2099 0.3578 36 1 3.4838 -3.4295 -1.7339 37 1 2.4005 -3.5518 -3.1408 38 1 5.2188 0.0907 -4.2592 39 1 0.0007 -4.2569 -0.6009 40 1 2.4236 -5.5602 -1.8920 41 1 2.4312 -5.0416 -0.1893 42 1 1.7386 -7.3223 -0.1261 43 1 0.6545 -7.1152 -1.5225 44 1 -0.0355 -5.2319 0.5879 45 1 -0.0271 -6.8963 1.2187 46 1 -2.2304 -6.5826 0.3617 47 1 -1.3838 -7.5165 -0.8950 48 1 -1.4815 -4.4794 -0.9453 49 1 -2.7619 -5.4731 -1.6811 50 1 -1.4655 -5.6546 -3.5231 51 1 -0.3178 -6.6091 -2.5537 52 1 -0.3042 -3.6178 -3.0890 53 1 0.9769 -4.8068 -3.4260 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204580347.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:45 Heat of formation + Delta-G solvation = 88.257294 kcal Electronic energy + Delta-G solvation = -29697.460774 eV Core-core repulsion = 26185.182544 eV Total energy + Delta-G solvation = -3512.278230 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.232 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.36194 -39.52477 -36.11433 -33.13585 -32.63432 -32.46514 -31.46189 -29.54510 -28.78683 -27.78014 -26.12042 -25.61807 -24.37517 -23.01183 -22.08322 -20.73876 -20.52446 -19.71168 -18.56415 -18.16585 -16.89667 -15.79037 -15.64724 -15.08852 -14.56042 -14.17991 -14.00302 -13.98844 -13.93491 -13.63029 -13.44181 -13.10050 -12.97145 -12.77449 -12.57598 -12.28944 -12.25570 -11.94939 -11.66383 -11.59104 -11.36277 -11.29095 -11.21061 -11.06533 -10.94544 -10.87398 -10.80280 -10.58881 -10.38631 -10.22697 -10.15508 -9.75839 -9.53718 -9.47586 -9.44922 -9.10655 -8.48053 -8.11881 -7.21227 -7.10719 -5.89389 -3.79738 2.94945 3.28781 3.36581 3.39484 3.50234 3.74050 4.50008 4.72910 4.90065 4.97935 5.12386 5.24593 5.28713 5.36133 5.38887 5.44374 5.44841 5.52472 5.62177 5.72934 5.75395 5.78858 5.83943 5.96117 5.99761 6.06576 6.07103 6.11002 6.15397 6.17082 6.17782 6.21879 6.24657 6.29372 6.30047 6.34594 6.42399 6.51900 6.56365 6.59472 6.63547 6.79560 6.85153 6.96949 6.98686 7.10456 7.14376 7.70185 7.80317 8.03497 8.09278 8.24566 8.76274 8.85021 9.31004 9.73143 11.22619 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.012502 B = 0.005384 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.124474 B = 5199.126691 C = 6468.516604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.088 3.912 3 N -0.314 5.314 4 N -0.366 5.366 5 C 0.112 3.888 6 C 0.108 3.892 7 C -0.207 4.207 8 C 0.148 3.852 9 N -0.516 5.516 10 C 0.161 3.839 11 C -0.476 4.476 12 H 0.090 0.910 13 C 0.065 3.935 14 N -0.902 5.902 15 Si 0.855 3.145 16 H -0.280 1.280 17 H -0.291 1.291 18 H -0.270 1.270 19 C 0.069 3.931 20 C -0.151 4.151 21 C -0.122 4.122 22 C -0.127 4.127 23 C -0.117 4.117 24 C -0.128 4.128 25 C -0.124 4.124 26 C -0.108 4.108 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.151 0.849 34 H 0.058 0.942 35 H 0.022 0.978 36 H -0.013 1.013 37 H 0.019 0.981 38 H 0.256 0.744 39 H 0.094 0.906 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.050 0.950 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.052 0.948 46 H 0.054 0.946 47 H 0.058 0.942 48 H 0.078 0.922 49 H 0.053 0.947 50 H 0.054 0.946 51 H 0.066 0.934 52 H 0.072 0.928 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.738 -9.195 9.167 14.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.078 4.078 3 N -0.138 5.138 4 N -0.147 5.147 5 C -0.030 4.030 6 C -0.039 4.039 7 C -0.219 4.219 8 C 0.020 3.980 9 N -0.239 5.239 10 C 0.035 3.965 11 C -0.515 4.515 12 H 0.108 0.892 13 C -0.134 4.134 14 N -0.543 5.543 15 Si 0.683 3.317 16 H -0.206 1.206 17 H -0.218 1.218 18 H -0.195 1.195 19 C -0.040 4.040 20 C -0.190 4.190 21 C -0.160 4.160 22 C -0.165 4.165 23 C -0.154 4.154 24 C -0.166 4.166 25 C -0.162 4.162 26 C -0.146 4.146 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.169 0.831 34 H 0.077 0.923 35 H 0.040 0.960 36 H 0.004 0.996 37 H 0.037 0.963 38 H 0.066 0.934 39 H 0.111 0.889 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.096 0.904 49 H 0.072 0.928 50 H 0.073 0.927 51 H 0.085 0.915 52 H 0.091 0.909 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.739 -7.349 8.889 13.358 hybrid contribution 1.798 -2.287 -0.533 2.958 sum -4.940 -9.636 8.356 13.678 Atomic orbital electron populations 1.20032 0.88067 1.03102 1.01026 1.21787 0.95925 0.90511 0.99618 1.77067 0.86551 1.22989 1.27209 1.47821 1.04847 1.04516 1.57474 1.21621 0.83903 0.93932 1.03523 1.21751 0.98616 0.84363 0.99203 1.19226 0.91394 0.94914 1.16333 1.20050 0.96981 0.91012 0.89979 1.62289 1.28838 1.24722 1.08003 1.20210 0.86694 0.98294 0.91287 1.21266 1.07942 0.92210 1.30041 0.89164 1.24824 0.97559 0.94498 0.96506 1.69917 1.26460 1.18414 1.39482 0.87193 0.80657 0.84214 0.79620 1.20632 1.21775 1.19486 1.22280 0.96149 0.87787 0.97752 1.22339 0.99189 0.96192 1.01302 1.21801 0.97025 0.97760 0.99418 1.21817 0.94526 1.02215 0.97905 1.21693 0.96978 0.98620 0.98125 1.21828 0.98949 0.99669 0.96115 1.21842 0.97497 0.99530 0.97329 1.21619 0.97861 0.98273 0.96840 0.92251 0.92065 0.90071 0.90401 0.90748 0.90908 0.83133 0.92346 0.95971 0.99566 0.96322 0.93421 0.88883 0.92206 0.92323 0.93161 0.91155 0.90716 0.92893 0.92681 0.92292 0.90372 0.92803 0.92739 0.91533 0.90911 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.07 10.26 36.01 0.37 -0.70 16 2 C 0.09 1.80 6.55 -82.41 -0.54 1.26 16 3 N -0.31 -6.96 12.58 33.67 0.42 -6.54 16 4 N -0.37 -7.62 4.01 -68.16 -0.27 -7.89 16 5 C 0.11 1.89 11.47 59.85 0.69 2.57 16 6 C 0.11 2.24 9.43 -17.22 -0.16 2.08 16 7 C -0.21 -4.21 3.47 -105.05 -0.37 -4.57 16 8 C 0.15 2.69 4.66 -4.98 -0.02 2.66 16 9 N -0.52 -9.91 4.45 -229.52 -1.02 -10.93 16 10 C 0.16 3.68 2.53 -4.97 -0.01 3.67 16 11 C -0.48 -12.70 6.81 -34.44 -0.23 -12.94 16 12 H 0.09 2.73 6.19 -52.49 -0.33 2.40 16 13 C 0.07 1.81 5.47 -17.82 -0.10 1.72 16 14 N -0.90 -26.62 13.96 55.43 0.77 -25.85 16 15 Si 0.85 21.07 27.58 -169.99 -4.69 16.38 16 16 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 17 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 18 H -0.27 -6.42 6.39 56.52 0.36 -6.06 16 19 C 0.07 1.07 1.59 -67.71 -0.11 0.96 16 20 C -0.15 -2.24 4.10 -26.73 -0.11 -2.35 16 21 C -0.12 -1.46 5.48 -26.75 -0.15 -1.60 16 22 C -0.13 -1.36 5.47 -26.74 -0.15 -1.51 16 23 C -0.12 -1.15 5.59 -26.72 -0.15 -1.30 16 24 C -0.13 -1.40 5.47 -26.74 -0.15 -1.54 16 25 C -0.12 -1.50 5.48 -26.74 -0.15 -1.65 16 26 C -0.11 -1.66 4.57 -26.73 -0.12 -1.78 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.08 1.35 7.96 -51.93 -0.41 0.93 16 30 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.15 2.96 8.06 -52.49 -0.42 2.54 16 34 H 0.06 0.93 7.93 -51.93 -0.41 0.52 16 35 H 0.02 0.40 6.57 -51.93 -0.34 0.06 16 36 H -0.01 -0.31 6.20 -51.93 -0.32 -0.64 16 37 H 0.02 0.44 5.83 -51.93 -0.30 0.14 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.09 1.32 2.62 -51.93 -0.14 1.18 16 40 H 0.06 0.99 7.36 -51.93 -0.38 0.61 16 41 H 0.06 0.91 6.39 -51.93 -0.33 0.58 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.82 4.69 -51.93 -0.24 0.57 16 44 H 0.07 0.87 5.47 -51.92 -0.28 0.58 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.56 7.47 -51.93 -0.39 0.17 16 48 H 0.08 0.93 5.47 -51.93 -0.28 0.65 16 49 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.07 0.78 4.69 -51.93 -0.24 0.53 16 52 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 53 H 0.06 0.98 6.63 -51.93 -0.34 0.63 16 LS Contribution 378.98 15.07 5.71 5.71 Total: -1.00 -30.96 378.98 -9.53 -40.49 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -9.00 Total: 3.65 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -1.45 Total: -15.03 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: -0.10 Total: -51.20 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.69 Total: 16.38 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.96 -9.53 -40.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204580347.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.745 kcal (2) G-P(sol) polarization free energy of solvation -30.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds