Wall clock time and date at job start Tue Mar 31 2020 12:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30833 * 125.89764 * 2 1 4 4 N 1.40079 * 108.20638 * 180.26187 * 3 2 1 5 5 C 1.46501 * 126.04225 * 179.69992 * 4 3 2 6 6 C 1.34947 * 107.92486 * 359.72157 * 4 3 2 7 7 C 1.35317 * 107.74684 * 359.97438 * 6 4 3 8 8 C 1.50700 * 126.04263 * 179.97438 * 7 6 4 9 9 N 1.46897 * 109.47569 * 260.02987 * 8 7 6 10 10 C 1.46899 * 110.99699 * 66.04503 * 9 8 7 11 11 C 1.50705 * 109.47450 * 282.48901 * 10 9 8 12 12 H 1.07999 * 119.99782 * 354.60652 * 11 10 9 13 13 C 1.37878 * 120.00286 * 174.59694 * 11 10 9 14 14 N 1.31517 * 119.99951 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 119.99885 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.46852 * 89.99653 * 15 13 11 17 17 H 1.48500 * 109.47016 * 209.99800 * 15 13 11 18 18 H 1.48497 * 109.47097 * 329.99899 * 15 13 11 19 19 C 1.46891 * 111.00337 * 190.00103 * 9 8 7 20 20 C 1.53016 * 109.47144 * 290.01155 * 19 9 8 21 21 C 1.52985 * 109.46376 * 164.04468 * 20 19 9 22 22 C 1.52985 * 109.51290 * 315.98829 * 21 20 19 23 23 C 1.53007 * 109.47064 * 112.93299 * 22 21 20 24 24 C 1.53007 * 109.43090 * 284.04678 * 23 22 21 25 25 C 1.52977 * 109.48648 * 75.96177 * 24 23 22 26 26 C 1.52998 * 109.50825 * 247.06466 * 25 24 23 27 27 H 1.09000 * 109.46802 * 270.20730 * 1 2 3 28 28 H 1.08995 * 109.47199 * 30.20733 * 1 2 3 29 29 H 1.09006 * 109.46868 * 150.21024 * 1 2 3 30 30 H 1.08999 * 109.47290 * 270.02758 * 5 4 3 31 31 H 1.09005 * 109.47053 * 30.02441 * 5 4 3 32 32 H 1.08997 * 109.47699 * 150.02208 * 5 4 3 33 33 H 1.07998 * 126.12833 * 179.97438 * 6 4 3 34 34 H 1.08996 * 109.46893 * 140.02922 * 8 7 6 35 35 H 1.08999 * 109.46880 * 20.03134 * 8 7 6 36 36 H 1.08994 * 109.47539 * 42.49405 * 10 9 8 37 37 H 1.08999 * 109.47335 * 162.49274 * 10 9 8 38 38 H 0.96993 * 119.99784 * 180.02562 * 14 13 11 39 39 H 1.08996 * 109.47363 * 50.00502 * 19 9 8 40 40 H 1.09001 * 109.47219 * 284.04550 * 20 19 9 41 41 H 1.08999 * 109.47265 * 44.04453 * 20 19 9 42 42 H 1.09003 * 109.46933 * 195.97713 * 21 20 19 43 43 H 1.09000 * 109.46162 * 75.99693 * 21 20 19 44 44 H 1.09009 * 109.46497 * 352.93362 * 22 21 20 45 45 H 1.08994 * 109.47751 * 232.93449 * 22 21 20 46 46 H 1.08996 * 109.47848 * 164.06224 * 23 22 21 47 47 H 1.08994 * 109.48219 * 44.03813 * 23 22 21 48 48 H 1.09002 * 109.47261 * 315.95531 * 24 23 22 49 49 H 1.09001 * 109.46271 * 195.96395 * 24 23 22 50 50 H 1.09006 * 109.46575 * 127.05231 * 25 24 23 51 51 H 1.09004 * 109.46717 * 7.07307 * 25 24 23 52 52 H 1.09000 * 109.47251 * 284.01625 * 26 25 24 53 53 H 1.09002 * 109.48046 * 164.01032 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6342 -0.0061 5 6 4.7898 1.5008 -0.0143 6 6 3.6142 -0.7153 -0.0035 7 6 2.3271 -1.1330 0.0046 8 6 1.8599 -2.5658 0.0095 9 7 1.4723 -2.9591 -1.3517 10 6 2.6368 -2.9743 -2.2470 11 6 2.9872 -1.5621 -2.6397 12 1 2.3528 -0.7434 -2.3336 13 6 4.1177 -1.3153 -3.3893 14 7 4.4237 -0.0828 -3.7315 15 14 5.2147 -2.7315 -3.9190 16 1 4.7569 -3.2471 -5.2343 17 1 6.6165 -2.2552 -4.0347 18 1 5.1428 -3.8178 -2.9092 19 6 0.7925 -4.2613 -1.3500 20 6 1.8015 -5.3630 -1.0189 21 6 1.0533 -6.6385 -0.6270 22 6 -0.0969 -6.2863 0.3182 23 6 -1.4315 -6.5575 -0.3793 24 6 -1.7109 -5.4463 -1.3933 25 6 -0.8377 -5.6543 -2.6320 26 6 0.1870 -4.5225 -2.7307 27 1 -0.3633 0.0037 1.0277 28 1 -0.3633 0.8881 -0.5170 29 1 -0.3633 -0.8919 -0.5106 30 1 5.0771 1.7137 -1.0440 31 1 4.5591 2.4343 0.4990 32 1 5.6121 0.9993 0.4959 33 1 4.4891 -1.3485 -0.0072 34 1 1.0024 -2.6659 0.6747 35 1 2.6672 -3.2099 0.3578 36 1 3.4838 -3.4295 -1.7339 37 1 2.4005 -3.5518 -3.1408 38 1 5.2188 0.0907 -4.2592 39 1 0.0007 -4.2569 -0.6009 40 1 2.4236 -5.5602 -1.8920 41 1 2.4312 -5.0416 -0.1893 42 1 1.7386 -7.3223 -0.1261 43 1 0.6545 -7.1152 -1.5225 44 1 -0.0355 -5.2319 0.5879 45 1 -0.0271 -6.8963 1.2187 46 1 -2.2304 -6.5826 0.3617 47 1 -1.3838 -7.5165 -0.8950 48 1 -1.4815 -4.4794 -0.9453 49 1 -2.7619 -5.4731 -1.6811 50 1 -1.4655 -5.6546 -3.5231 51 1 -0.3178 -6.6091 -2.5537 52 1 -0.3042 -3.6178 -3.0890 53 1 0.9769 -4.8068 -3.4260 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204580347.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:44 Heat of formation + Delta-G solvation = 70.003158 kcal Electronic energy + Delta-G solvation = -29698.252333 eV Core-core repulsion = 26185.182544 eV Total energy + Delta-G solvation = -3513.069788 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.232 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.90383 -40.71235 -37.45724 -34.64273 -34.42370 -33.63709 -32.78787 -31.05046 -30.31166 -29.51669 -27.40760 -26.68566 -25.73344 -24.71555 -23.36145 -21.97994 -21.66950 -21.18827 -20.03327 -19.49061 -18.87815 -17.30157 -16.96393 -16.53426 -16.05164 -15.86612 -15.38208 -15.17218 -15.00691 -14.93583 -14.79359 -14.63137 -14.32681 -14.08127 -14.01226 -13.79660 -13.60529 -13.38357 -13.06060 -13.01546 -12.80835 -12.71900 -12.65590 -12.43969 -12.22502 -12.06715 -12.06380 -11.90212 -11.77506 -11.53997 -11.49631 -11.28167 -11.11594 -11.02794 -10.65625 -10.58932 -10.46701 -9.73600 -8.80873 -8.66809 -8.05316 -5.98458 1.29485 1.33557 1.36188 1.40532 2.02956 2.18450 2.41808 3.25364 3.52002 3.80427 3.90951 4.04072 4.11628 4.18764 4.28784 4.34790 4.39645 4.40209 4.43461 4.44807 4.48105 4.48660 4.65069 4.66195 4.74202 4.75224 4.88920 4.90420 4.96490 4.98039 5.05462 5.07366 5.11851 5.15651 5.20890 5.24436 5.26995 5.30320 5.35962 5.39799 5.45874 5.49302 5.54640 5.56293 5.60704 5.73649 5.76913 5.81014 6.17790 6.28847 6.51123 6.67064 6.93423 7.09025 7.17175 7.57187 9.08616 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.012502 B = 0.005384 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.124474 B = 5199.126691 C = 6468.516604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.075 3.925 3 N -0.348 5.348 4 N -0.375 5.375 5 C 0.109 3.891 6 C 0.091 3.909 7 C -0.216 4.216 8 C 0.152 3.848 9 N -0.528 5.528 10 C 0.178 3.822 11 C -0.459 4.459 12 H 0.052 0.948 13 C 0.016 3.984 14 N -0.943 5.943 15 Si 0.912 3.088 16 H -0.282 1.282 17 H -0.292 1.292 18 H -0.255 1.255 19 C 0.071 3.929 20 C -0.147 4.147 21 C -0.117 4.117 22 C -0.125 4.125 23 C -0.113 4.113 24 C -0.126 4.126 25 C -0.117 4.117 26 C -0.106 4.106 27 H 0.090 0.910 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.156 0.844 34 H 0.085 0.915 35 H 0.026 0.974 36 H -0.019 1.019 37 H 0.012 0.988 38 H 0.253 0.747 39 H 0.116 0.884 40 H 0.037 0.963 41 H 0.051 0.949 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.067 0.933 48 H 0.067 0.933 49 H 0.066 0.934 50 H 0.060 0.940 51 H 0.075 0.925 52 H 0.051 0.949 53 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.020 -11.879 10.697 17.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.090 4.090 3 N -0.172 5.172 4 N -0.156 5.156 5 C -0.032 4.032 6 C -0.057 4.057 7 C -0.227 4.227 8 C 0.024 3.976 9 N -0.250 5.250 10 C 0.051 3.949 11 C -0.498 4.498 12 H 0.070 0.930 13 C -0.179 4.179 14 N -0.586 5.586 15 Si 0.739 3.261 16 H -0.209 1.209 17 H -0.218 1.218 18 H -0.179 1.179 19 C -0.036 4.036 20 C -0.186 4.186 21 C -0.154 4.154 22 C -0.163 4.163 23 C -0.150 4.150 24 C -0.163 4.163 25 C -0.155 4.155 26 C -0.144 4.144 27 H 0.109 0.891 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.069 0.931 31 H 0.112 0.888 32 H 0.123 0.877 33 H 0.173 0.827 34 H 0.103 0.897 35 H 0.044 0.956 36 H -0.001 1.001 37 H 0.030 0.970 38 H 0.062 0.938 39 H 0.133 0.867 40 H 0.056 0.944 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.085 0.915 48 H 0.085 0.915 49 H 0.085 0.915 50 H 0.078 0.922 51 H 0.093 0.907 52 H 0.069 0.931 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.034 -10.054 10.434 16.568 hybrid contribution 2.143 -1.395 -1.008 2.748 sum -5.891 -11.450 9.426 15.958 Atomic orbital electron populations 1.20103 0.85756 1.02899 1.02965 1.22408 0.97583 0.90299 0.98748 1.76987 0.87505 1.24229 1.28479 1.48131 1.05216 1.04969 1.57325 1.21809 0.83881 0.95015 1.02507 1.22008 0.99239 0.84745 0.99693 1.19573 0.91267 0.96031 1.15854 1.20097 0.98146 0.89683 0.89677 1.62165 1.27182 1.27451 1.08213 1.19869 0.87931 0.95363 0.91747 1.21312 1.06753 0.93034 1.28727 0.93012 1.25431 0.99115 0.96378 0.97018 1.70073 1.27139 1.20467 1.40907 0.86260 0.78761 0.81802 0.79256 1.20871 1.21825 1.17923 1.22402 0.96439 0.86229 0.98536 1.22256 0.98808 0.97455 1.00061 1.21770 0.97433 0.96131 1.00100 1.21797 0.94355 1.01902 0.98200 1.21674 0.96865 0.98371 0.98085 1.21802 0.99341 0.99581 0.95624 1.21799 0.96865 0.98278 0.98549 1.21582 0.97984 0.98687 0.96165 0.89139 0.92481 0.89944 0.93107 0.88780 0.87694 0.82662 0.89696 0.95633 1.00110 0.97039 0.93761 0.86682 0.94397 0.93023 0.92284 0.90669 0.91576 0.91406 0.91169 0.91452 0.91457 0.91540 0.92156 0.90667 0.93051 0.94485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.92 10.26 71.24 0.73 -1.19 16 2 C 0.08 3.11 6.55 43.10 0.28 3.39 16 3 N -0.35 -15.68 12.58 -47.39 -0.60 -16.28 16 4 N -0.38 -15.94 4.01 -369.56 -1.48 -17.42 16 5 C 0.11 3.72 11.47 127.77 1.47 5.19 16 6 C 0.09 3.81 9.43 83.54 0.79 4.60 16 7 C -0.22 -8.75 3.47 -20.14 -0.07 -8.82 16 8 C 0.15 5.33 4.66 85.56 0.40 5.73 16 9 N -0.53 -19.96 4.45 -880.07 -3.92 -23.88 16 10 C 0.18 8.13 2.53 85.56 0.22 8.35 16 11 C -0.46 -25.03 6.81 25.60 0.17 -24.86 16 12 H 0.05 3.22 6.19 -2.91 -0.02 3.21 16 13 C 0.02 0.91 5.47 84.65 0.46 1.37 16 14 N -0.94 -57.41 13.96 21.45 0.30 -57.12 16 15 Si 0.91 44.04 27.58 68.60 1.89 45.93 16 16 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 17 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 18 H -0.26 -11.59 6.39 99.48 0.64 -10.95 16 19 C 0.07 2.11 1.59 44.92 0.07 2.19 16 20 C -0.15 -4.11 4.10 30.59 0.13 -3.99 16 21 C -0.12 -2.43 5.48 30.58 0.17 -2.26 16 22 C -0.13 -2.21 5.47 30.59 0.17 -2.04 16 23 C -0.11 -1.76 5.59 30.60 0.17 -1.58 16 24 C -0.13 -2.35 5.47 30.59 0.17 -2.18 16 25 C -0.12 -2.57 5.48 30.59 0.17 -2.41 16 26 C -0.11 -3.18 4.57 30.60 0.14 -3.04 16 27 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.08 2.65 7.96 -2.38 -0.02 2.63 16 30 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.09 2.76 8.14 -2.38 -0.02 2.74 16 32 H 0.10 2.81 8.14 -2.39 -0.02 2.80 16 33 H 0.16 6.19 8.06 -2.91 -0.02 6.17 16 34 H 0.08 2.51 7.93 -2.39 -0.02 2.49 16 35 H 0.03 0.88 6.57 -2.39 -0.02 0.87 16 36 H -0.02 -0.88 6.20 -2.39 -0.01 -0.89 16 37 H 0.01 0.55 5.83 -2.39 -0.01 0.54 16 38 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 39 H 0.12 2.97 2.62 -2.39 -0.01 2.96 16 40 H 0.04 1.22 7.36 -2.39 -0.02 1.20 16 41 H 0.05 1.52 6.39 -2.39 -0.02 1.50 16 42 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.08 1.51 4.69 -2.39 -0.01 1.50 16 44 H 0.07 1.30 5.47 -2.38 -0.01 1.28 16 45 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.07 0.98 7.47 -2.39 -0.02 0.96 16 48 H 0.07 1.41 5.47 -2.39 -0.01 1.40 16 49 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 51 H 0.08 1.54 4.69 -2.38 -0.01 1.53 16 52 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 53 H 0.04 1.24 6.63 -2.39 -0.02 1.23 16 Total: -1.00 -68.77 378.98 2.64 -66.12 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.82 Total: 24.19 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 5.63 Total: -21.55 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -5.70 Total: -114.69 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.89 Total: 45.93 kcal Total: -68.77 2.64 -66.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204580347.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.128 kcal (2) G-P(sol) polarization free energy of solvation -68.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds