Wall clock time and date at job start Tue Mar 31 2020 12:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35905 * 117.00163 * 2 1 4 4 C 1.38755 * 120.05358 * 359.72342 * 3 2 1 5 5 C 1.38126 * 119.94349 * 179.74455 * 4 3 2 6 6 C 1.38287 * 120.05276 * 0.50853 * 5 4 3 7 7 C 1.38240 * 120.11456 * 359.76847 * 6 5 4 8 8 C 1.50703 * 119.97457 * 179.97438 * 7 6 5 9 9 N 1.46900 * 109.46929 * 270.02384 * 8 7 6 10 10 C 1.46901 * 110.99687 * 288.90788 * 9 8 7 11 11 C 1.53003 * 109.46979 * 163.38185 * 10 9 8 12 12 C 1.53007 * 109.47131 * 174.63118 * 11 10 9 13 13 C 1.52997 * 109.47102 * 294.62673 * 11 10 9 14 14 C 1.46903 * 110.99876 * 164.95807 * 9 8 7 15 15 C 1.52997 * 109.46651 * 273.95524 * 14 9 8 16 16 H 1.09005 * 109.47528 * 306.44597 * 15 14 9 17 17 C 1.53004 * 109.47128 * 66.45131 * 15 14 9 18 18 C 1.53002 * 109.47277 * 186.44554 * 15 14 9 19 19 C 1.50700 * 109.47525 * 174.99908 * 18 15 14 20 20 H 1.08001 * 119.99515 * 0.02562 * 19 18 15 21 21 C 1.37877 * 119.99818 * 180.02562 * 19 18 15 22 22 N 1.31517 * 120.00043 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99656 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47309 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47165 * 119.99895 * 23 21 19 26 26 H 1.48503 * 109.47106 * 239.99689 * 23 21 19 27 27 C 1.38168 * 120.05451 * 359.97438 * 7 6 5 28 28 H 1.09002 * 109.46819 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47270 * 300.00280 * 1 2 3 30 30 H 1.09001 * 109.46649 * 60.00188 * 1 2 3 31 31 H 1.08000 * 120.02850 * 359.97438 * 4 3 2 32 32 H 1.07999 * 119.97339 * 180.25043 * 5 4 3 33 33 H 1.07997 * 119.93933 * 179.73927 * 6 5 4 34 34 H 1.09000 * 109.46803 * 30.01678 * 8 7 6 35 35 H 1.08993 * 109.47049 * 150.02318 * 8 7 6 36 36 H 1.09002 * 109.47346 * 283.37919 * 10 9 8 37 37 H 1.08998 * 109.47328 * 43.38009 * 10 9 8 38 38 H 1.09003 * 109.47232 * 54.63277 * 11 10 9 39 39 H 1.08998 * 109.47233 * 59.99616 * 12 11 10 40 40 H 1.08996 * 109.47059 * 180.02562 * 12 11 10 41 41 H 1.08998 * 109.46683 * 300.00103 * 12 11 10 42 42 H 1.08999 * 109.47628 * 305.02191 * 13 11 10 43 43 H 1.09003 * 109.46561 * 65.01847 * 13 11 10 44 44 H 1.08996 * 109.47533 * 185.01579 * 13 11 10 45 45 H 1.08998 * 109.47358 * 33.95718 * 14 9 8 46 46 H 1.09003 * 109.47167 * 153.95789 * 14 9 8 47 47 H 1.09000 * 109.46828 * 170.34185 * 17 15 14 48 48 H 1.08998 * 109.46755 * 290.33843 * 17 15 14 49 49 H 1.08997 * 109.47156 * 50.33777 * 17 15 14 50 50 H 1.08996 * 109.47118 * 295.00724 * 18 15 14 51 51 H 1.09006 * 109.46426 * 55.00010 * 18 15 14 52 52 H 0.97003 * 119.99574 * 180.02562 * 22 21 19 53 53 H 1.08001 * 120.02425 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0058 5 6 1.9209 3.6048 -0.0004 6 6 3.3019 3.6758 0.0001 7 6 4.0560 2.5172 0.0000 8 6 5.5608 2.5982 0.0000 9 7 6.0497 2.6251 -1.3850 10 6 5.8762 1.3167 -2.0300 11 6 5.9967 1.4759 -3.5469 12 6 5.9499 0.0976 -4.2097 13 6 4.8372 2.3298 -4.0638 14 6 7.4527 3.0571 -1.4398 15 6 7.5143 4.5852 -1.4836 16 1 6.8939 4.9506 -2.3021 17 6 6.9996 5.1546 -0.1600 18 6 8.9614 5.0313 -1.7022 19 6 9.0061 6.5285 -1.8680 20 1 8.0936 7.1043 -1.8217 21 6 10.2119 7.1630 -2.0789 22 7 11.3230 6.4616 -2.1358 23 14 10.2673 9.0189 -2.2838 24 1 8.8921 9.5697 -2.1801 25 1 11.1189 9.6091 -1.2200 26 1 10.8349 9.3533 -3.6147 27 6 3.4311 1.2849 0.0001 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2128 2.3204 -0.0107 32 1 1.3340 4.5114 -0.0009 33 1 3.7921 4.6381 0.0000 34 1 5.8757 3.5063 0.5141 35 1 5.9715 1.7289 0.5134 36 1 6.6456 0.6314 -1.6743 37 1 4.8923 0.9177 -1.7835 38 1 6.9419 1.9627 -3.7872 39 1 5.0048 -0.3893 -3.9693 40 1 6.0362 0.2110 -5.2903 41 1 6.7759 -0.5108 -3.8414 42 1 3.8919 1.8895 -3.7464 43 1 4.9214 3.3390 -3.6606 44 1 4.8722 2.3695 -5.1525 45 1 7.9784 2.6975 -0.5553 46 1 7.9240 2.6487 -2.3338 47 1 7.2011 6.2251 -0.1222 48 1 5.9257 4.9841 -0.0843 49 1 7.5053 4.6601 0.6693 50 1 9.5645 4.7429 -0.8413 51 1 9.3570 4.5544 -2.5990 52 1 12.1713 6.9081 -2.2837 53 1 4.0207 0.3800 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204696857.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:34 Heat of formation + Delta-G solvation = -30.044003 kcal Electronic energy + Delta-G solvation = -27894.202493 eV Core-core repulsion = 24344.501583 eV Total energy + Delta-G solvation = -3549.700910 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.31344 -38.76119 -37.21939 -35.36545 -33.79684 -32.10983 -31.07749 -30.44005 -27.56204 -27.24838 -26.90726 -26.55742 -25.87462 -23.46810 -22.62486 -21.99905 -20.77633 -19.62090 -18.94576 -17.81248 -16.36804 -16.29907 -16.11373 -15.93010 -15.55200 -15.08554 -14.82915 -14.36907 -14.25328 -13.76987 -13.66404 -13.59901 -13.15104 -13.12031 -12.65007 -12.47629 -12.19969 -12.11965 -12.00559 -11.89894 -11.72933 -11.56242 -11.47105 -11.25882 -11.17192 -10.95749 -10.76589 -10.72190 -10.69122 -10.58248 -10.28367 -10.14034 -9.98026 -9.60047 -9.03254 -8.94448 -8.86225 -8.29854 -8.23630 -7.91902 -5.94598 -3.95107 1.26517 1.43702 3.09539 3.33930 3.41676 3.45648 3.66837 4.34014 4.51805 4.66399 4.73647 4.87475 4.89225 4.98575 5.03997 5.13558 5.18338 5.27228 5.35539 5.39448 5.41453 5.47123 5.58111 5.61895 5.74388 5.77379 5.78626 5.86907 5.91534 6.01504 6.05423 6.06799 6.14801 6.17902 6.22674 6.30183 6.30627 6.41406 6.53772 6.57087 6.64766 6.66246 6.66889 6.71478 7.03058 7.20827 7.24076 7.28158 7.43283 7.51909 7.75089 7.91684 8.06656 8.50921 9.11744 9.68108 11.16967 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.015755 B = 0.003053 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.746559 B = 9170.179775 C =10177.771951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.121 3.879 4 C -0.213 4.213 5 C -0.082 4.082 6 C -0.132 4.132 7 C -0.025 4.025 8 C 0.072 3.928 9 N -0.524 5.524 10 C 0.053 3.947 11 C -0.093 4.093 12 C -0.145 4.145 13 C -0.132 4.132 14 C 0.058 3.942 15 C -0.075 4.075 16 H 0.064 0.936 17 C -0.139 4.139 18 C 0.027 3.973 19 C -0.509 4.509 20 H 0.057 0.943 21 C 0.054 3.946 22 N -0.897 5.897 23 Si 0.888 3.112 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.285 1.285 27 C -0.148 4.148 28 H 0.097 0.903 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.108 0.892 35 H 0.037 0.963 36 H 0.028 0.972 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.050 0.950 40 H 0.054 0.946 41 H 0.050 0.950 42 H 0.043 0.957 43 H 0.068 0.932 44 H 0.042 0.958 45 H 0.032 0.968 46 H 0.069 0.931 47 H 0.062 0.938 48 H 0.043 0.957 49 H 0.037 0.963 50 H 0.013 0.987 51 H 0.013 0.987 52 H 0.258 0.742 53 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.482 -13.302 3.348 24.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.076 3.924 4 C -0.232 4.232 5 C -0.100 4.100 6 C -0.151 4.151 7 C -0.025 4.025 8 C -0.055 4.055 9 N -0.248 5.248 10 C -0.075 4.075 11 C -0.111 4.111 12 C -0.203 4.203 13 C -0.189 4.189 14 C -0.069 4.069 15 C -0.094 4.094 16 H 0.083 0.917 17 C -0.196 4.196 18 C -0.011 4.011 19 C -0.547 4.547 20 H 0.075 0.925 21 C -0.146 4.146 22 N -0.537 5.537 23 Si 0.716 3.284 24 H -0.197 1.197 25 H -0.212 1.212 26 H -0.211 1.211 27 C -0.167 4.167 28 H 0.115 0.885 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.126 0.874 35 H 0.056 0.944 36 H 0.046 0.954 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.087 0.913 44 H 0.061 0.939 45 H 0.051 0.949 46 H 0.087 0.913 47 H 0.081 0.919 48 H 0.061 0.939 49 H 0.056 0.944 50 H 0.031 0.969 51 H 0.032 0.968 52 H 0.068 0.932 53 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -20.480 -13.141 3.068 24.526 hybrid contribution 0.370 0.507 0.275 0.685 sum -20.110 -12.635 3.344 23.984 Atomic orbital electron populations 1.23008 0.78695 1.03655 1.01248 1.86056 1.21136 1.27238 1.89017 1.18951 0.92216 0.83982 0.97221 1.21155 0.99640 0.92521 1.09911 1.20928 0.94713 0.96799 0.97561 1.21019 0.93351 0.98531 1.02214 1.19634 0.95608 0.91872 0.95425 1.21551 0.89962 1.03050 0.90946 1.61990 1.21037 1.26943 1.14805 1.22311 1.00780 0.90006 0.94380 1.21109 1.00227 0.95685 0.94127 1.21818 1.01245 0.96876 1.00388 1.21648 0.96947 1.01051 0.99281 1.22419 0.86002 0.98118 1.00322 1.21148 1.00050 0.90992 0.97206 0.91749 1.21965 0.98318 1.02126 0.97211 1.19125 0.89375 0.95914 0.96672 1.21274 0.92804 0.92547 1.48096 0.92512 1.25019 0.95903 0.97955 0.95721 1.69979 0.98000 1.35165 1.50580 0.86602 0.78013 0.86199 0.77591 1.19745 1.21177 1.21148 1.20306 0.91147 0.98193 1.07073 0.88479 0.92816 0.92755 0.85962 0.85949 0.85460 0.87394 0.94445 0.95405 0.90770 0.90751 0.93066 0.92712 0.93084 0.93762 0.91301 0.93899 0.94925 0.91303 0.91854 0.93856 0.94412 0.96880 0.96842 0.93223 0.85767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.53 10.50 -19.44 -0.20 -3.74 16 3 C 0.12 1.43 6.69 -39.22 -0.26 1.17 16 4 C -0.21 -2.26 9.04 -39.43 -0.36 -2.62 16 5 C -0.08 -0.89 10.04 -39.60 -0.40 -1.29 16 6 C -0.13 -1.63 9.70 -39.56 -0.38 -2.01 16 7 C -0.02 -0.32 5.07 -104.65 -0.53 -0.85 16 8 C 0.07 0.97 4.43 -4.97 -0.02 0.95 16 9 N -0.52 -7.65 3.82 -236.07 -0.90 -8.55 16 10 C 0.05 0.70 4.14 -3.82 -0.02 0.69 16 11 C -0.09 -1.21 2.92 -90.62 -0.26 -1.48 16 12 C -0.15 -1.61 9.19 37.16 0.34 -1.27 16 13 C -0.13 -1.74 9.03 37.16 0.34 -1.41 16 14 C 0.06 0.99 4.49 -3.82 -0.02 0.98 16 15 C -0.07 -1.50 2.54 -90.62 -0.23 -1.73 16 16 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 17 C -0.14 -2.55 7.57 37.16 0.28 -2.27 16 18 C 0.03 0.68 4.45 -27.88 -0.12 0.55 16 19 C -0.51 -14.14 8.27 -34.44 -0.28 -14.42 16 20 H 0.06 1.54 7.12 -52.49 -0.37 1.17 16 21 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 22 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 23 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 C -0.15 -1.84 8.00 -39.43 -0.32 -2.15 16 28 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.32 7.67 -51.93 -0.40 -0.08 16 30 H 0.05 0.33 7.65 -51.93 -0.40 -0.07 16 31 H 0.12 1.01 6.30 -52.49 -0.33 0.68 16 32 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.13 1.55 7.16 -52.49 -0.38 1.17 16 34 H 0.11 1.51 4.07 -51.93 -0.21 1.30 16 35 H 0.04 0.49 8.01 -51.93 -0.42 0.07 16 36 H 0.03 0.37 8.04 -51.93 -0.42 -0.05 16 37 H 0.07 0.96 5.29 -51.93 -0.27 0.68 16 38 H 0.07 1.10 6.54 -51.93 -0.34 0.76 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.07 1.03 7.90 -51.93 -0.41 0.62 16 44 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.03 0.56 7.80 -51.93 -0.40 0.15 16 46 H 0.07 1.21 6.22 -51.93 -0.32 0.88 16 47 H 0.06 1.28 6.73 -51.93 -0.35 0.93 16 48 H 0.04 0.68 5.25 -51.93 -0.27 0.41 16 49 H 0.04 0.66 7.76 -51.93 -0.40 0.26 16 50 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 52 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 53 H 0.12 1.48 7.56 -52.49 -0.40 1.08 16 LS Contribution 406.00 15.07 6.12 6.12 Total: -1.00 -30.25 406.00 -10.08 -40.33 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -9.46 Total: -0.10 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: -1.35 Total: -24.50 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: -0.17 Total: -34.80 kcal Atomic # 8 Polarization: -3.53 SS G_CDS: -0.20 Total: -3.74 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -30.25 -10.08 -40.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204696857.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.283 kcal (2) G-P(sol) polarization free energy of solvation -30.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds