Wall clock time and date at job start Tue Mar 31 2020 12:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35905 * 117.00163 * 2 1 4 4 C 1.38755 * 120.05358 * 359.72342 * 3 2 1 5 5 C 1.38126 * 119.94349 * 179.74455 * 4 3 2 6 6 C 1.38287 * 120.05276 * 0.50853 * 5 4 3 7 7 C 1.38240 * 120.11456 * 359.76847 * 6 5 4 8 8 C 1.50703 * 119.97457 * 179.97438 * 7 6 5 9 9 N 1.46900 * 109.46929 * 270.02384 * 8 7 6 10 10 C 1.46901 * 110.99687 * 288.90788 * 9 8 7 11 11 C 1.53003 * 109.46979 * 163.38185 * 10 9 8 12 12 C 1.53007 * 109.47131 * 174.63118 * 11 10 9 13 13 C 1.52997 * 109.47102 * 294.62673 * 11 10 9 14 14 C 1.46903 * 110.99876 * 164.95807 * 9 8 7 15 15 C 1.52997 * 109.46651 * 273.95524 * 14 9 8 16 16 H 1.09005 * 109.47528 * 306.44597 * 15 14 9 17 17 C 1.53004 * 109.47128 * 66.45131 * 15 14 9 18 18 C 1.53002 * 109.47277 * 186.44554 * 15 14 9 19 19 C 1.50700 * 109.47525 * 174.99908 * 18 15 14 20 20 H 1.08001 * 119.99515 * 0.02562 * 19 18 15 21 21 C 1.37877 * 119.99818 * 180.02562 * 19 18 15 22 22 N 1.31517 * 120.00043 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99656 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47309 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47165 * 119.99895 * 23 21 19 26 26 H 1.48503 * 109.47106 * 239.99689 * 23 21 19 27 27 C 1.38168 * 120.05451 * 359.97438 * 7 6 5 28 28 H 1.09002 * 109.46819 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47270 * 300.00280 * 1 2 3 30 30 H 1.09001 * 109.46649 * 60.00188 * 1 2 3 31 31 H 1.08000 * 120.02850 * 359.97438 * 4 3 2 32 32 H 1.07999 * 119.97339 * 180.25043 * 5 4 3 33 33 H 1.07997 * 119.93933 * 179.73927 * 6 5 4 34 34 H 1.09000 * 109.46803 * 30.01678 * 8 7 6 35 35 H 1.08993 * 109.47049 * 150.02318 * 8 7 6 36 36 H 1.09002 * 109.47346 * 283.37919 * 10 9 8 37 37 H 1.08998 * 109.47328 * 43.38009 * 10 9 8 38 38 H 1.09003 * 109.47232 * 54.63277 * 11 10 9 39 39 H 1.08998 * 109.47233 * 59.99616 * 12 11 10 40 40 H 1.08996 * 109.47059 * 180.02562 * 12 11 10 41 41 H 1.08998 * 109.46683 * 300.00103 * 12 11 10 42 42 H 1.08999 * 109.47628 * 305.02191 * 13 11 10 43 43 H 1.09003 * 109.46561 * 65.01847 * 13 11 10 44 44 H 1.08996 * 109.47533 * 185.01579 * 13 11 10 45 45 H 1.08998 * 109.47358 * 33.95718 * 14 9 8 46 46 H 1.09003 * 109.47167 * 153.95789 * 14 9 8 47 47 H 1.09000 * 109.46828 * 170.34185 * 17 15 14 48 48 H 1.08998 * 109.46755 * 290.33843 * 17 15 14 49 49 H 1.08997 * 109.47156 * 50.33777 * 17 15 14 50 50 H 1.08996 * 109.47118 * 295.00724 * 18 15 14 51 51 H 1.09006 * 109.46426 * 55.00010 * 18 15 14 52 52 H 0.97003 * 119.99574 * 180.02562 * 22 21 19 53 53 H 1.08001 * 120.02425 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0058 5 6 1.9209 3.6048 -0.0004 6 6 3.3019 3.6758 0.0001 7 6 4.0560 2.5172 0.0000 8 6 5.5608 2.5982 0.0000 9 7 6.0497 2.6251 -1.3850 10 6 5.8762 1.3167 -2.0300 11 6 5.9967 1.4759 -3.5469 12 6 5.9499 0.0976 -4.2097 13 6 4.8372 2.3298 -4.0638 14 6 7.4527 3.0571 -1.4398 15 6 7.5143 4.5852 -1.4836 16 1 6.8939 4.9506 -2.3021 17 6 6.9996 5.1546 -0.1600 18 6 8.9614 5.0313 -1.7022 19 6 9.0061 6.5285 -1.8680 20 1 8.0936 7.1043 -1.8217 21 6 10.2119 7.1630 -2.0789 22 7 11.3230 6.4616 -2.1358 23 14 10.2673 9.0189 -2.2838 24 1 8.8921 9.5697 -2.1801 25 1 11.1189 9.6091 -1.2200 26 1 10.8349 9.3533 -3.6147 27 6 3.4311 1.2849 0.0001 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2128 2.3204 -0.0107 32 1 1.3340 4.5114 -0.0009 33 1 3.7921 4.6381 0.0000 34 1 5.8757 3.5063 0.5141 35 1 5.9715 1.7289 0.5134 36 1 6.6456 0.6314 -1.6743 37 1 4.8923 0.9177 -1.7835 38 1 6.9419 1.9627 -3.7872 39 1 5.0048 -0.3893 -3.9693 40 1 6.0362 0.2110 -5.2903 41 1 6.7759 -0.5108 -3.8414 42 1 3.8919 1.8895 -3.7464 43 1 4.9214 3.3390 -3.6606 44 1 4.8722 2.3695 -5.1525 45 1 7.9784 2.6975 -0.5553 46 1 7.9240 2.6487 -2.3338 47 1 7.2011 6.2251 -0.1222 48 1 5.9257 4.9841 -0.0843 49 1 7.5053 4.6601 0.6693 50 1 9.5645 4.7429 -0.8413 51 1 9.3570 4.5544 -2.5990 52 1 12.1713 6.9081 -2.2837 53 1 4.0207 0.3800 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204696857.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:33 Heat of formation + Delta-G solvation = -44.983741 kcal Electronic energy + Delta-G solvation = -27894.850328 eV Core-core repulsion = 24344.501583 eV Total energy + Delta-G solvation = -3550.348745 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.17054 -39.86167 -38.15418 -36.82517 -35.23642 -33.91789 -32.17427 -31.29380 -29.07387 -28.28933 -27.90636 -27.73627 -27.12807 -25.19380 -23.55149 -23.28600 -21.71105 -20.91283 -20.45569 -18.65434 -18.42007 -17.19813 -17.03898 -16.80088 -16.59526 -16.54476 -16.07416 -15.93452 -15.23408 -15.04482 -14.80409 -14.51478 -14.43312 -14.29489 -14.10944 -13.50503 -13.41388 -13.39682 -13.22620 -13.09243 -12.96732 -12.78870 -12.69582 -12.65626 -12.44698 -12.39363 -11.99068 -11.92922 -11.91009 -11.77672 -11.68238 -11.63164 -11.38998 -11.20307 -10.98982 -10.73113 -10.50959 -9.78093 -9.13374 -9.08508 -8.14841 -6.23053 0.38521 0.55859 1.40567 1.41316 1.54133 2.40170 2.43733 2.73122 3.18745 3.22850 3.81432 3.91349 3.94082 4.10112 4.13618 4.20636 4.28449 4.31868 4.37328 4.39575 4.42077 4.49421 4.56947 4.60666 4.61392 4.71616 4.75743 4.79443 4.80600 4.84494 4.87067 4.91278 4.98626 5.07177 5.11545 5.13248 5.15647 5.28412 5.31139 5.37110 5.42858 5.50194 5.54475 5.55377 5.58101 5.64032 5.75819 5.84208 5.88370 5.94631 6.19555 6.26914 6.37256 6.51030 6.93268 7.44823 8.97376 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.015755 B = 0.003053 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.746559 B = 9170.179775 C =10177.771951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.338 6.338 3 C 0.115 3.885 4 C -0.211 4.211 5 C -0.082 4.082 6 C -0.148 4.148 7 C -0.033 4.033 8 C 0.074 3.926 9 N -0.525 5.525 10 C 0.057 3.943 11 C -0.094 4.094 12 C -0.140 4.140 13 C -0.125 4.125 14 C 0.071 3.929 15 C -0.063 4.063 16 H 0.053 0.947 17 C -0.130 4.130 18 C 0.033 3.967 19 C -0.522 4.522 20 H 0.060 0.940 21 C -0.003 4.003 22 N -0.936 5.936 23 Si 0.958 3.042 24 H -0.261 1.261 25 H -0.280 1.280 26 H -0.281 1.281 27 C -0.160 4.160 28 H 0.116 0.884 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.125 0.875 34 H 0.102 0.898 35 H 0.042 0.958 36 H 0.029 0.971 37 H 0.083 0.917 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.049 0.951 43 H 0.046 0.954 44 H 0.050 0.950 45 H 0.031 0.969 46 H 0.060 0.940 47 H 0.042 0.958 48 H 0.071 0.929 49 H 0.042 0.958 50 H -0.012 1.012 51 H -0.016 1.016 52 H 0.261 0.739 53 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.133 -13.386 3.553 26.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.070 3.930 4 C -0.230 4.230 5 C -0.100 4.100 6 C -0.166 4.166 7 C -0.034 4.034 8 C -0.053 4.053 9 N -0.248 5.248 10 C -0.070 4.070 11 C -0.113 4.113 12 C -0.198 4.198 13 C -0.182 4.182 14 C -0.056 4.056 15 C -0.082 4.082 16 H 0.071 0.929 17 C -0.186 4.186 18 C -0.004 4.004 19 C -0.560 4.560 20 H 0.079 0.921 21 C -0.200 4.200 22 N -0.577 5.577 23 Si 0.783 3.217 24 H -0.185 1.185 25 H -0.206 1.206 26 H -0.207 1.207 27 C -0.179 4.179 28 H 0.135 0.865 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.166 0.834 32 H 0.163 0.837 33 H 0.142 0.858 34 H 0.120 0.880 35 H 0.060 0.940 36 H 0.047 0.953 37 H 0.101 0.899 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.049 0.951 46 H 0.078 0.922 47 H 0.061 0.939 48 H 0.089 0.911 49 H 0.061 0.939 50 H 0.007 0.993 51 H 0.003 0.997 52 H 0.069 0.931 53 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -23.158 -13.235 3.278 26.874 hybrid contribution 1.113 0.457 0.217 1.223 sum -22.045 -12.777 3.494 25.719 Atomic orbital electron populations 1.23310 0.76581 1.05393 1.02187 1.86037 1.23372 1.26955 1.88861 1.19086 0.92207 0.84813 0.96940 1.21449 1.00955 0.91884 1.08681 1.21203 0.94271 0.97953 0.96538 1.21118 0.94271 0.98211 1.03051 1.19516 0.94852 0.92407 0.96596 1.21514 0.90895 1.02914 0.89984 1.61912 1.18929 1.28065 1.15938 1.22319 1.01214 0.89167 0.94338 1.21111 0.99072 0.96832 0.94245 1.21764 1.01960 0.95483 1.00556 1.21563 0.97192 0.99776 0.99661 1.22109 0.87785 0.95879 0.99876 1.20912 0.96220 0.93232 0.97848 0.92878 1.21868 1.00133 1.00494 0.96138 1.19007 0.92308 0.94963 0.94137 1.21653 0.93019 0.93794 1.47583 0.92149 1.25929 0.95541 1.03107 0.95417 1.70113 0.98658 1.37303 1.51649 0.85495 0.78512 0.80051 0.77600 1.18529 1.20590 1.20700 1.20344 0.91858 0.97964 1.07747 0.86536 0.91715 0.91860 0.83450 0.83711 0.85754 0.88027 0.93968 0.95258 0.89899 0.92920 0.92043 0.92098 0.92719 0.93158 0.93463 0.93132 0.95056 0.92182 0.93927 0.91052 0.93910 0.99338 0.99728 0.93056 0.85842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.33 16 2 O -0.34 -6.75 10.50 -92.48 -0.97 -7.73 16 3 C 0.11 2.49 6.69 22.51 0.15 2.64 16 4 C -0.21 -3.91 9.04 22.37 0.20 -3.71 16 5 C -0.08 -1.59 10.04 22.25 0.22 -1.36 16 6 C -0.15 -3.44 9.70 22.28 0.22 -3.22 16 7 C -0.03 -0.81 5.07 -19.88 -0.10 -0.91 16 8 C 0.07 1.94 4.43 85.56 0.38 2.32 16 9 N -0.53 -15.29 3.82 -900.78 -3.44 -18.73 16 10 C 0.06 1.49 4.14 86.30 0.36 1.84 16 11 C -0.09 -2.42 2.92 -10.79 -0.03 -2.45 16 12 C -0.14 -2.91 9.19 71.98 0.66 -2.25 16 13 C -0.12 -3.22 9.03 71.98 0.65 -2.57 16 14 C 0.07 2.49 4.49 86.30 0.39 2.87 16 15 C -0.06 -2.60 2.54 -10.79 -0.03 -2.62 16 16 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 17 C -0.13 -4.76 7.57 71.98 0.54 -4.21 16 18 C 0.03 1.77 4.45 29.85 0.13 1.90 16 19 C -0.52 -29.69 8.27 25.60 0.21 -29.47 16 20 H 0.06 3.32 7.12 -2.91 -0.02 3.30 16 21 C 0.00 -0.18 5.46 84.65 0.46 0.29 16 22 N -0.94 -57.70 13.29 21.45 0.28 -57.41 16 23 Si 0.96 44.90 29.54 68.60 2.03 46.92 16 24 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 26 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 27 C -0.16 -3.78 8.00 22.37 0.18 -3.60 16 28 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 0.56 7.67 -2.39 -0.02 0.55 16 30 H 0.06 0.58 7.65 -2.39 -0.02 0.56 16 31 H 0.15 1.91 6.30 -2.91 -0.02 1.89 16 32 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 33 H 0.12 2.89 7.16 -2.91 -0.02 2.87 16 34 H 0.10 2.77 4.07 -2.39 -0.01 2.76 16 35 H 0.04 1.07 8.01 -2.39 -0.02 1.05 16 36 H 0.03 0.76 8.04 -2.39 -0.02 0.74 16 37 H 0.08 2.05 5.29 -2.39 -0.01 2.04 16 38 H 0.05 1.59 6.54 -2.39 -0.02 1.58 16 39 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.05 1.41 7.90 -2.39 -0.02 1.39 16 44 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.03 1.09 7.80 -2.39 -0.02 1.08 16 46 H 0.06 2.20 6.22 -2.39 -0.01 2.18 16 47 H 0.04 1.73 6.73 -2.39 -0.02 1.71 16 48 H 0.07 2.21 5.25 -2.39 -0.01 2.20 16 49 H 0.04 1.50 7.76 -2.39 -0.02 1.49 16 50 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 51 H -0.02 -0.91 8.14 -2.38 -0.02 -0.93 16 52 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 53 H 0.12 2.84 7.56 -2.91 -0.02 2.81 16 Total: -1.00 -66.06 406.00 4.47 -61.59 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.86 Total: 18.53 kcal Atomic # 6 Polarization: -48.90 SS G_CDS: 5.71 Total: -43.19 kcal Atomic # 7 Polarization: -72.98 SS G_CDS: -3.16 Total: -76.14 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.97 Total: -7.73 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -66.06 4.47 -61.59 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204696857.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.611 kcal (2) G-P(sol) polarization free energy of solvation -66.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds