Wall clock time and date at job start Tue Mar 31 2020 12:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39870 * 125.89567 * 2 1 4 4 C 1.35319 * 107.92282 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.13121 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.47111 * 95.02414 * 5 4 3 7 7 C 1.46899 * 110.99945 * 287.18454 * 6 5 4 8 8 C 1.50699 * 109.47479 * 76.00036 * 7 6 5 9 9 H 1.07994 * 119.99910 * 5.31278 * 8 7 6 10 10 C 1.37882 * 120.00180 * 185.31899 * 8 7 6 11 11 N 1.31509 * 119.99737 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99927 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46890 * 89.99698 * 12 10 8 14 14 H 1.48504 * 109.46753 * 209.99396 * 12 10 8 15 15 H 1.48493 * 109.47121 * 329.99627 * 12 10 8 16 16 C 1.46900 * 110.99906 * 163.22766 * 6 5 4 17 17 C 1.52991 * 109.46422 * 69.99004 * 16 6 5 18 18 C 1.52996 * 109.47220 * 164.01960 * 17 16 6 19 19 C 1.53018 * 109.46329 * 75.94197 * 18 17 16 20 20 C 1.52994 * 109.45959 * 284.05599 * 19 18 17 21 21 C 1.52987 * 109.49783 * 315.99249 * 20 19 18 22 22 C 1.53008 * 109.47891 * 112.94202 * 21 20 19 23 23 C 1.52981 * 109.46431 * 190.01248 * 16 6 5 24 24 N 1.34948 * 107.73884 * 0.22898 * 4 3 2 25 25 C 1.46509 * 126.03390 * 179.76935 * 24 4 3 26 26 N 1.30830 * 125.90112 * 180.02562 * 2 1 3 27 27 H 1.09007 * 109.46958 * 90.00177 * 1 2 3 28 28 H 1.08998 * 109.46992 * 209.99575 * 1 2 3 29 29 H 1.08993 * 109.47557 * 330.00035 * 1 2 3 30 30 H 1.07997 * 126.04247 * 0.02562 * 3 2 1 31 31 H 1.09003 * 109.46389 * 335.02513 * 5 4 3 32 32 H 1.09000 * 109.47204 * 215.02515 * 5 4 3 33 33 H 1.08999 * 109.47096 * 195.99898 * 7 6 5 34 34 H 1.09000 * 109.47269 * 315.99616 * 7 6 5 35 35 H 0.97007 * 120.00047 * 180.02562 * 11 10 8 36 36 H 1.08997 * 109.46870 * 310.00070 * 16 6 5 37 37 H 1.09000 * 109.47161 * 284.01273 * 17 16 6 38 38 H 1.09003 * 109.47493 * 44.01956 * 17 16 6 39 39 H 1.09001 * 109.46722 * 315.94875 * 18 17 16 40 40 H 1.08994 * 109.47718 * 195.94405 * 18 17 16 41 41 H 1.09000 * 109.47388 * 164.05532 * 19 18 17 42 42 H 1.09006 * 109.47525 * 44.05519 * 19 18 17 43 43 H 1.08993 * 109.46313 * 195.98132 * 20 19 18 44 44 H 1.08996 * 109.45815 * 75.99837 * 20 19 18 45 45 H 1.09003 * 109.47026 * 352.93706 * 21 20 19 46 46 H 1.09002 * 109.46566 * 232.94758 * 21 20 19 47 47 H 1.08991 * 109.47507 * 164.05238 * 22 21 20 48 48 H 1.08997 * 109.47474 * 44.02652 * 22 21 20 49 49 H 1.09010 * 109.46691 * 247.06813 * 23 16 6 50 50 H 1.09000 * 109.47418 * 7.06450 * 23 16 6 51 51 H 1.08996 * 109.46893 * 90.00161 * 25 24 4 52 52 H 1.08990 * 109.46998 * 210.00238 * 25 24 4 53 53 H 1.08996 * 109.46939 * 330.00348 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 -0.0006 5 6 4.8350 1.5991 -0.0013 6 7 5.3035 1.7882 1.3781 7 6 4.4037 2.6797 2.1221 8 6 3.1525 1.9295 2.4999 9 1 3.0729 0.8728 2.2918 10 6 2.1093 2.5923 3.1110 11 7 2.2064 3.8790 3.3647 12 14 0.5581 1.6625 3.5786 13 1 0.6984 1.1271 4.9567 14 1 -0.6065 2.5821 3.5209 15 1 0.3494 0.5392 2.6301 16 6 6.6827 2.2934 1.4010 17 6 6.7047 3.7385 0.8993 18 6 8.0321 4.3929 1.2872 19 6 9.1403 3.8852 0.3624 20 6 9.5356 2.4652 0.7724 21 6 9.6560 2.3883 2.2956 22 6 8.5514 1.4863 2.8499 23 6 7.2208 2.2415 2.8321 24 7 3.6087 -0.6339 -0.0061 25 6 4.7900 -1.5006 -0.0133 26 7 2.2742 -1.0598 -0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.9922 2.1598 0.0004 31 1 4.5828 2.5667 -0.4353 32 1 5.6225 1.1303 -0.5915 33 1 4.9040 3.0297 3.0250 34 1 4.1408 3.5338 1.4980 35 1 1.4726 4.3453 3.7951 36 1 7.3068 1.6753 0.7557 37 1 6.5982 3.7482 -0.1854 38 1 5.8811 4.2923 1.3502 39 1 8.2748 4.1384 2.3189 40 1 7.9456 5.4752 1.1906 41 1 10.0076 4.5407 0.4405 42 1 8.7808 3.8795 -0.6667 43 1 10.4931 2.2095 0.3189 44 1 8.7738 1.7637 0.4324 45 1 9.5556 3.3878 2.7188 46 1 10.6294 1.9769 2.5627 47 1 8.7942 1.2017 3.8736 48 1 8.4695 0.5913 2.2333 49 1 7.3741 3.2563 3.1996 50 1 6.5031 1.7280 3.4719 51 1 5.0861 -1.7197 1.0125 52 1 4.5548 -2.4309 -0.5302 53 1 5.6077 -0.9958 -0.5276 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205904539.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:49 Heat of formation + Delta-G solvation = 83.805526 kcal Electronic energy + Delta-G solvation = -29593.006663 eV Core-core repulsion = 26080.535390 eV Total energy + Delta-G solvation = -3512.471273 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.232 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.53187 -39.50958 -36.18854 -33.31723 -32.69353 -32.53042 -31.50971 -29.52878 -28.80044 -27.40555 -26.01160 -25.55728 -24.67823 -23.82861 -22.03549 -21.70482 -19.66165 -19.50616 -18.71300 -18.30766 -16.60732 -15.85971 -15.78686 -15.00533 -14.78430 -14.49496 -14.07958 -13.99015 -13.77375 -13.62738 -13.53414 -13.19059 -13.01203 -12.69524 -12.62421 -12.43483 -12.19525 -11.95921 -11.80054 -11.63965 -11.51600 -11.41865 -11.07220 -10.94595 -10.94000 -10.73723 -10.61257 -10.46076 -10.39740 -10.24587 -10.18632 -9.98135 -9.73922 -9.72840 -9.32954 -9.12731 -8.32676 -8.20266 -7.37383 -7.28487 -5.89546 -3.83557 2.68070 3.28276 3.39734 3.47425 3.56509 3.69559 4.56547 4.76102 4.91164 4.97983 5.04938 5.11765 5.32710 5.34120 5.39016 5.45284 5.46678 5.47305 5.52296 5.55298 5.60112 5.66176 5.71732 5.85241 5.90239 5.92496 5.96575 6.04464 6.06868 6.09577 6.12241 6.16580 6.20500 6.29205 6.33092 6.35934 6.38905 6.46157 6.55636 6.67123 6.69344 6.74898 6.76394 6.86653 7.15168 7.28018 7.37238 7.57816 7.85605 7.97650 8.10777 8.22153 8.58626 8.62247 9.20622 9.76697 11.20997 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.013841 B = 0.004935 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.467405 B = 5671.965395 C = 6752.092908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.065 3.935 3 C -0.213 4.213 4 C 0.119 3.881 5 C 0.129 3.871 6 N -0.528 5.528 7 C 0.192 3.808 8 C -0.480 4.480 9 H 0.065 0.935 10 C 0.058 3.942 11 N -0.906 5.906 12 Si 0.874 3.126 13 H -0.288 1.288 14 H -0.291 1.291 15 H -0.257 1.257 16 C 0.085 3.915 17 C -0.155 4.155 18 C -0.135 4.135 19 C -0.116 4.116 20 C -0.127 4.127 21 C -0.127 4.127 22 C -0.114 4.114 23 C -0.117 4.117 24 N -0.372 5.372 25 C 0.115 3.885 26 N -0.318 5.318 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.139 0.861 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.028 0.972 34 H -0.001 1.001 35 H 0.257 0.743 36 H 0.075 0.925 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.051 0.949 47 H 0.055 0.945 48 H 0.061 0.939 49 H 0.066 0.934 50 H 0.078 0.922 51 H 0.069 0.931 52 H 0.074 0.926 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.529 -2.989 -7.186 13.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.099 4.099 3 C -0.242 4.242 4 C -0.008 4.008 5 C -0.001 4.001 6 N -0.252 5.252 7 C 0.068 3.932 8 C -0.519 4.519 9 H 0.083 0.917 10 C -0.142 4.142 11 N -0.547 5.547 12 Si 0.703 3.297 13 H -0.215 1.215 14 H -0.217 1.217 15 H -0.181 1.181 16 C -0.024 4.024 17 C -0.194 4.194 18 C -0.172 4.172 19 C -0.153 4.153 20 C -0.164 4.164 21 C -0.164 4.164 22 C -0.152 4.152 23 C -0.155 4.155 24 N -0.155 5.155 25 C -0.027 4.027 26 N -0.143 5.143 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.157 0.843 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.046 0.954 34 H 0.017 0.983 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.070 0.930 47 H 0.074 0.926 48 H 0.079 0.921 49 H 0.084 0.916 50 H 0.097 0.903 51 H 0.088 0.912 52 H 0.093 0.907 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.576 -4.674 -6.886 14.257 hybrid contribution -0.883 1.379 0.148 1.644 sum 10.692 -3.296 -6.738 13.061 Atomic orbital electron populations 1.20118 0.88137 1.02740 1.01492 1.21975 0.96080 0.91343 1.00544 1.20837 0.90799 0.99081 1.13520 1.20526 0.96587 0.83532 1.00155 1.20375 0.91759 0.96174 0.91776 1.62520 1.01387 1.50626 1.10691 1.19813 0.90673 0.90178 0.92573 1.21220 0.98457 0.95946 1.36262 0.91686 1.24805 0.98363 0.94596 0.96428 1.69952 1.32468 1.08240 1.44017 0.86850 0.83331 0.80496 0.79048 1.21517 1.21691 1.18107 1.22010 0.90780 0.93067 0.96522 1.22406 0.97998 0.98561 1.00423 1.22027 0.94848 0.99183 1.01165 1.21611 0.98188 0.96289 0.99257 1.21850 1.00870 0.97628 0.96060 1.21837 0.98208 1.00687 0.95686 1.21675 0.94954 0.98185 1.00398 1.21840 0.96054 1.00528 0.97035 1.48028 1.04720 1.04247 1.58486 1.21553 0.84389 0.93949 1.02831 1.77080 0.86451 1.22815 1.27933 0.91562 0.91879 0.90924 0.84336 0.93148 0.92238 0.95389 0.98289 0.93384 0.90747 0.92939 0.90552 0.89560 0.92971 0.92838 0.92475 0.92969 0.90905 0.91043 0.93004 0.92616 0.92059 0.91552 0.90300 0.91239 0.90725 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.16 9.72 36.01 0.35 -0.81 16 2 C 0.07 1.35 7.22 -82.41 -0.59 0.76 16 3 C -0.21 -4.57 7.85 -40.01 -0.31 -4.89 16 4 C 0.12 2.38 4.60 -82.26 -0.38 2.01 16 5 C 0.13 2.31 4.64 -4.98 -0.02 2.29 16 6 N -0.53 -10.14 4.29 -229.54 -0.98 -11.12 16 7 C 0.19 4.57 3.22 -4.98 -0.02 4.56 16 8 C -0.48 -12.76 6.28 -34.44 -0.22 -12.97 16 9 H 0.06 1.82 5.99 -52.49 -0.31 1.51 16 10 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 11 N -0.91 -26.27 13.29 55.43 0.74 -25.53 16 12 Si 0.87 21.76 29.50 -169.99 -5.02 16.75 16 13 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 15 H -0.26 -6.21 5.97 56.52 0.34 -5.87 16 16 C 0.08 1.32 1.74 -67.73 -0.12 1.20 16 17 C -0.15 -2.35 4.43 -26.74 -0.12 -2.47 16 18 C -0.13 -1.71 5.33 -26.72 -0.14 -1.85 16 19 C -0.12 -1.26 5.71 -26.73 -0.15 -1.41 16 20 C -0.13 -1.33 5.48 -26.74 -0.15 -1.47 16 21 C -0.13 -1.36 5.47 -26.73 -0.15 -1.51 16 22 C -0.11 -1.40 5.59 -26.72 -0.15 -1.55 16 23 C -0.12 -1.79 4.17 -26.74 -0.11 -1.91 16 24 N -0.37 -7.15 4.01 -63.88 -0.26 -7.40 16 25 C 0.12 1.65 11.28 59.85 0.67 2.33 16 26 N -0.32 -6.71 12.58 33.67 0.42 -6.29 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.07 1.29 7.74 -51.93 -0.40 0.89 16 30 H 0.14 3.11 8.04 -52.49 -0.42 2.69 16 31 H 0.05 0.93 7.49 -51.93 -0.39 0.54 16 32 H 0.06 0.90 6.88 -51.93 -0.36 0.54 16 33 H 0.03 0.72 6.59 -51.93 -0.34 0.38 16 34 H 0.00 -0.02 6.75 -51.93 -0.35 -0.37 16 35 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.07 1.06 4.40 -51.93 -0.23 0.83 16 37 H 0.05 0.77 7.56 -51.93 -0.39 0.37 16 38 H 0.08 1.41 5.96 -51.93 -0.31 1.10 16 39 H 0.09 1.11 2.83 -51.93 -0.15 0.96 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.62 7.82 -51.93 -0.41 0.21 16 43 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.82 4.69 -51.93 -0.24 0.57 16 45 H 0.07 0.79 5.47 -51.93 -0.28 0.50 16 46 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.06 0.75 7.47 -51.93 -0.39 0.36 16 49 H 0.07 1.02 5.47 -51.92 -0.28 0.74 16 50 H 0.08 1.46 7.25 -51.93 -0.38 1.08 16 51 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 52 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 53 H 0.08 0.92 7.14 -51.93 -0.37 0.55 16 LS Contribution 379.20 15.07 5.71 5.71 Total: -1.00 -30.27 379.20 -10.09 -40.37 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -9.01 Total: 3.70 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -1.70 Total: -16.19 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.08 Total: -50.34 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.27 -10.09 -40.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205904539.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.175 kcal (2) G-P(sol) polarization free energy of solvation -30.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds