Wall clock time and date at job start Tue Mar 31 2020 12:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39870 * 125.89567 * 2 1 4 4 C 1.35319 * 107.92282 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.13121 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.47111 * 95.02414 * 5 4 3 7 7 C 1.46899 * 110.99945 * 287.18454 * 6 5 4 8 8 C 1.50699 * 109.47479 * 76.00036 * 7 6 5 9 9 H 1.07994 * 119.99910 * 5.31278 * 8 7 6 10 10 C 1.37882 * 120.00180 * 185.31899 * 8 7 6 11 11 N 1.31509 * 119.99737 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99927 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46890 * 89.99698 * 12 10 8 14 14 H 1.48504 * 109.46753 * 209.99396 * 12 10 8 15 15 H 1.48493 * 109.47121 * 329.99627 * 12 10 8 16 16 C 1.46900 * 110.99906 * 163.22766 * 6 5 4 17 17 C 1.52991 * 109.46422 * 69.99004 * 16 6 5 18 18 C 1.52996 * 109.47220 * 164.01960 * 17 16 6 19 19 C 1.53018 * 109.46329 * 75.94197 * 18 17 16 20 20 C 1.52994 * 109.45959 * 284.05599 * 19 18 17 21 21 C 1.52987 * 109.49783 * 315.99249 * 20 19 18 22 22 C 1.53008 * 109.47891 * 112.94202 * 21 20 19 23 23 C 1.52981 * 109.46431 * 190.01248 * 16 6 5 24 24 N 1.34948 * 107.73884 * 0.22898 * 4 3 2 25 25 C 1.46509 * 126.03390 * 179.76935 * 24 4 3 26 26 N 1.30830 * 125.90112 * 180.02562 * 2 1 3 27 27 H 1.09007 * 109.46958 * 90.00177 * 1 2 3 28 28 H 1.08998 * 109.46992 * 209.99575 * 1 2 3 29 29 H 1.08993 * 109.47557 * 330.00035 * 1 2 3 30 30 H 1.07997 * 126.04247 * 0.02562 * 3 2 1 31 31 H 1.09003 * 109.46389 * 335.02513 * 5 4 3 32 32 H 1.09000 * 109.47204 * 215.02515 * 5 4 3 33 33 H 1.08999 * 109.47096 * 195.99898 * 7 6 5 34 34 H 1.09000 * 109.47269 * 315.99616 * 7 6 5 35 35 H 0.97007 * 120.00047 * 180.02562 * 11 10 8 36 36 H 1.08997 * 109.46870 * 310.00070 * 16 6 5 37 37 H 1.09000 * 109.47161 * 284.01273 * 17 16 6 38 38 H 1.09003 * 109.47493 * 44.01956 * 17 16 6 39 39 H 1.09001 * 109.46722 * 315.94875 * 18 17 16 40 40 H 1.08994 * 109.47718 * 195.94405 * 18 17 16 41 41 H 1.09000 * 109.47388 * 164.05532 * 19 18 17 42 42 H 1.09006 * 109.47525 * 44.05519 * 19 18 17 43 43 H 1.08993 * 109.46313 * 195.98132 * 20 19 18 44 44 H 1.08996 * 109.45815 * 75.99837 * 20 19 18 45 45 H 1.09003 * 109.47026 * 352.93706 * 21 20 19 46 46 H 1.09002 * 109.46566 * 232.94758 * 21 20 19 47 47 H 1.08991 * 109.47507 * 164.05238 * 22 21 20 48 48 H 1.08997 * 109.47474 * 44.02652 * 22 21 20 49 49 H 1.09010 * 109.46691 * 247.06813 * 23 16 6 50 50 H 1.09000 * 109.47418 * 7.06450 * 23 16 6 51 51 H 1.08996 * 109.46893 * 90.00161 * 25 24 4 52 52 H 1.08990 * 109.46998 * 210.00238 * 25 24 4 53 53 H 1.08996 * 109.46939 * 330.00348 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 -0.0006 5 6 4.8350 1.5991 -0.0013 6 7 5.3035 1.7882 1.3781 7 6 4.4037 2.6797 2.1221 8 6 3.1525 1.9295 2.4999 9 1 3.0729 0.8728 2.2918 10 6 2.1093 2.5923 3.1110 11 7 2.2064 3.8790 3.3647 12 14 0.5581 1.6625 3.5786 13 1 0.6984 1.1271 4.9567 14 1 -0.6065 2.5821 3.5209 15 1 0.3494 0.5392 2.6301 16 6 6.6827 2.2934 1.4010 17 6 6.7047 3.7385 0.8993 18 6 8.0321 4.3929 1.2872 19 6 9.1403 3.8852 0.3624 20 6 9.5356 2.4652 0.7724 21 6 9.6560 2.3883 2.2956 22 6 8.5514 1.4863 2.8499 23 6 7.2208 2.2415 2.8321 24 7 3.6087 -0.6339 -0.0061 25 6 4.7900 -1.5006 -0.0133 26 7 2.2742 -1.0598 -0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.9922 2.1598 0.0004 31 1 4.5828 2.5667 -0.4353 32 1 5.6225 1.1303 -0.5915 33 1 4.9040 3.0297 3.0250 34 1 4.1408 3.5338 1.4980 35 1 1.4726 4.3453 3.7951 36 1 7.3068 1.6753 0.7557 37 1 6.5982 3.7482 -0.1854 38 1 5.8811 4.2923 1.3502 39 1 8.2748 4.1384 2.3189 40 1 7.9456 5.4752 1.1906 41 1 10.0076 4.5407 0.4405 42 1 8.7808 3.8795 -0.6667 43 1 10.4931 2.2095 0.3189 44 1 8.7738 1.7637 0.4324 45 1 9.5556 3.3878 2.7188 46 1 10.6294 1.9769 2.5627 47 1 8.7942 1.2017 3.8736 48 1 8.4695 0.5913 2.2333 49 1 7.3741 3.2563 3.1996 50 1 6.5031 1.7280 3.4719 51 1 5.0861 -1.7197 1.0125 52 1 4.5548 -2.4309 -0.5302 53 1 5.6077 -0.9958 -0.5276 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205904539.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:48 Heat of formation + Delta-G solvation = 66.582595 kcal Electronic energy + Delta-G solvation = -29593.753505 eV Core-core repulsion = 26080.535390 eV Total energy + Delta-G solvation = -3513.218115 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.232 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.06275 -40.72406 -37.56717 -34.84798 -34.44224 -33.73286 -32.85058 -30.95678 -30.22756 -29.28331 -27.21532 -26.67026 -26.03241 -25.54698 -23.68636 -22.74723 -21.12721 -20.59898 -20.06480 -19.79603 -18.51927 -17.34008 -17.11624 -16.52630 -16.21130 -16.12541 -15.47169 -15.25676 -15.07981 -14.91595 -14.73336 -14.43625 -14.36524 -14.20626 -13.94611 -13.83956 -13.66024 -13.62833 -13.09615 -13.02289 -12.86747 -12.78840 -12.71702 -12.38299 -12.31879 -12.19811 -12.04824 -11.77283 -11.70893 -11.64303 -11.48478 -11.36867 -11.21535 -11.14583 -10.78604 -10.52858 -10.46818 -9.73781 -9.00379 -8.91749 -8.05891 -6.03843 1.12333 1.36860 1.41051 1.54702 1.89549 2.08985 2.49470 3.29160 3.42558 3.74056 3.81034 3.91094 4.03392 4.09966 4.17993 4.30182 4.31753 4.35365 4.37369 4.43185 4.45981 4.49848 4.50451 4.57568 4.65576 4.76364 4.79466 4.90140 4.91726 4.93451 5.00570 5.07621 5.09351 5.12347 5.17394 5.19954 5.22976 5.26333 5.32371 5.36402 5.41935 5.50658 5.52817 5.56324 5.58291 5.70554 5.75610 5.84181 6.00806 6.23569 6.39073 6.43324 6.76459 7.02117 7.05420 7.59212 9.04070 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.013841 B = 0.004935 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.467405 B = 5671.965395 C = 6752.092908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.054 3.946 3 C -0.242 4.242 4 C 0.118 3.882 5 C 0.131 3.869 6 N -0.531 5.531 7 C 0.217 3.783 8 C -0.469 4.469 9 H 0.053 0.947 10 C 0.013 3.987 11 N -0.938 5.938 12 Si 0.922 3.078 13 H -0.294 1.294 14 H -0.287 1.287 15 H -0.247 1.247 16 C 0.088 3.912 17 C -0.148 4.148 18 C -0.132 4.132 19 C -0.111 4.111 20 C -0.124 4.124 21 C -0.124 4.124 22 C -0.107 4.107 23 C -0.113 4.113 24 N -0.370 5.370 25 C 0.105 3.895 26 N -0.337 5.337 27 H 0.095 0.905 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.116 0.884 31 H 0.042 0.958 32 H 0.099 0.901 33 H 0.003 0.997 34 H -0.029 1.029 35 H 0.255 0.745 36 H 0.103 0.897 37 H 0.060 0.940 38 H 0.034 0.966 39 H 0.084 0.916 40 H 0.050 0.950 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.068 0.932 49 H 0.059 0.941 50 H 0.041 0.959 51 H 0.067 0.933 52 H 0.094 0.906 53 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.873 -4.588 -8.565 16.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.110 4.110 3 C -0.272 4.272 4 C -0.011 4.011 5 C 0.002 3.998 6 N -0.255 5.255 7 C 0.091 3.909 8 C -0.508 4.508 9 H 0.071 0.929 10 C -0.183 4.183 11 N -0.581 5.581 12 Si 0.749 3.251 13 H -0.221 1.221 14 H -0.213 1.213 15 H -0.170 1.170 16 C -0.020 4.020 17 C -0.187 4.187 18 C -0.169 4.169 19 C -0.149 4.149 20 C -0.162 4.162 21 C -0.161 4.161 22 C -0.145 4.145 23 C -0.151 4.151 24 N -0.153 5.153 25 C -0.035 4.035 26 N -0.162 5.162 27 H 0.114 0.886 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.134 0.866 31 H 0.060 0.940 32 H 0.117 0.883 33 H 0.021 0.979 34 H -0.011 1.011 35 H 0.064 0.936 36 H 0.121 0.879 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.102 0.898 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.077 0.923 48 H 0.086 0.914 49 H 0.078 0.922 50 H 0.059 0.941 51 H 0.086 0.914 52 H 0.113 0.887 53 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 13.938 -6.305 -8.276 17.393 hybrid contribution -1.541 1.867 0.567 2.486 sum 12.397 -4.438 -7.709 15.259 Atomic orbital electron populations 1.20211 0.86376 1.02534 1.03428 1.22405 0.97511 0.90911 1.00208 1.20814 0.92132 0.98452 1.15817 1.20767 0.96763 0.84382 0.99153 1.20443 0.92287 0.95830 0.91256 1.62392 1.02295 1.49474 1.11317 1.19318 0.90416 0.89551 0.91589 1.21345 0.99295 0.95260 1.34899 0.92884 1.25404 1.00869 0.95169 0.96904 1.70055 1.33174 1.09471 1.45381 0.86101 0.80787 0.79841 0.78361 1.22146 1.21337 1.17036 1.22160 0.88782 0.93723 0.97335 1.22298 0.98100 0.97871 1.00426 1.21994 0.94169 0.99012 1.01724 1.21576 0.97675 0.96926 0.98685 1.21834 1.01695 0.96923 0.95701 1.21801 0.98237 1.00096 0.95931 1.21618 0.93488 0.98262 1.01102 1.21791 0.97074 1.00209 0.96020 1.48386 1.05284 1.04389 1.57258 1.21941 0.83501 0.94597 1.03508 1.77013 0.87456 1.23125 1.28644 0.88630 0.91304 0.91721 0.86557 0.94019 0.88258 0.97885 1.01126 0.93587 0.87905 0.92174 0.94750 0.89759 0.93084 0.91353 0.92076 0.90991 0.91476 0.91463 0.91158 0.92264 0.91357 0.92230 0.94062 0.91394 0.88697 0.87632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.29 9.72 71.24 0.69 -1.60 16 2 C 0.05 2.22 7.22 43.10 0.31 2.53 16 3 C -0.24 -10.60 7.85 21.99 0.17 -10.42 16 4 C 0.12 4.67 4.60 41.41 0.19 4.86 16 5 C 0.13 4.59 4.64 85.56 0.40 4.99 16 6 N -0.53 -20.39 4.29 -880.13 -3.77 -24.17 16 7 C 0.22 10.79 3.22 85.56 0.28 11.06 16 8 C -0.47 -25.72 6.28 25.60 0.16 -25.56 16 9 H 0.05 3.02 5.99 -2.91 -0.02 3.01 16 10 C 0.01 0.74 5.46 84.66 0.46 1.20 16 11 N -0.94 -56.52 13.29 21.45 0.28 -56.23 16 12 Si 0.92 45.76 29.50 68.60 2.02 47.78 16 13 H -0.29 -14.82 7.11 99.48 0.71 -14.11 16 14 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 15 H -0.25 -11.74 5.97 99.48 0.59 -11.14 16 16 C 0.09 2.65 1.74 44.91 0.08 2.73 16 17 C -0.15 -4.47 4.43 30.59 0.14 -4.33 16 18 C -0.13 -3.18 5.33 30.60 0.16 -3.02 16 19 C -0.11 -2.05 5.71 30.60 0.17 -1.88 16 20 C -0.12 -2.10 5.48 30.59 0.17 -1.94 16 21 C -0.12 -2.24 5.47 30.59 0.17 -2.07 16 22 C -0.11 -2.39 5.59 30.60 0.17 -2.22 16 23 C -0.11 -3.45 4.17 30.59 0.13 -3.33 16 24 N -0.37 -13.69 4.01 -356.03 -1.43 -15.12 16 25 C 0.10 2.71 11.28 127.77 1.44 4.15 16 26 N -0.34 -13.90 12.58 -47.39 -0.60 -14.50 16 27 H 0.10 2.65 8.14 -2.38 -0.02 2.63 16 28 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.06 2.28 7.74 -2.39 -0.02 2.27 16 30 H 0.12 5.51 8.04 -2.91 -0.02 5.48 16 31 H 0.04 1.55 7.49 -2.39 -0.02 1.53 16 32 H 0.10 2.67 6.88 -2.39 -0.02 2.66 16 33 H 0.00 0.17 6.59 -2.39 -0.02 0.15 16 34 H -0.03 -1.59 6.75 -2.39 -0.02 -1.61 16 35 H 0.26 14.84 8.31 -92.70 -0.77 14.07 16 36 H 0.10 2.59 4.40 -2.39 -0.01 2.58 16 37 H 0.06 1.70 7.56 -2.39 -0.02 1.68 16 38 H 0.03 1.33 5.96 -2.39 -0.01 1.31 16 39 H 0.08 2.09 2.83 -2.39 -0.01 2.08 16 40 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.06 1.11 7.82 -2.38 -0.02 1.09 16 43 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.07 1.21 4.69 -2.39 -0.01 1.20 16 45 H 0.07 1.31 5.47 -2.39 -0.01 1.29 16 46 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.07 1.45 7.47 -2.39 -0.02 1.43 16 49 H 0.06 1.87 5.47 -2.38 -0.01 1.86 16 50 H 0.04 1.56 7.25 -2.39 -0.02 1.55 16 51 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 52 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 53 H 0.11 2.09 7.14 -2.39 -0.02 2.07 16 Total: -1.00 -68.22 379.20 2.58 -65.64 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.78 Total: 21.43 kcal Atomic # 6 Polarization: -30.13 SS G_CDS: 5.29 Total: -24.85 kcal Atomic # 7 Polarization: -104.50 SS G_CDS: -5.51 Total: -110.02 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.02 Total: 47.78 kcal Total: -68.22 2.58 -65.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205904539.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.227 kcal (2) G-P(sol) polarization free energy of solvation -68.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds