Wall clock time and date at job start Tue Mar 31 2020 13:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47380 * 2 1 4 4 C 1.36881 * 126.39389 * 261.83736 * 3 2 1 5 5 C 1.34670 * 106.81485 * 179.97438 * 4 3 2 6 6 N 1.34119 * 108.02077 * 0.02562 * 5 4 3 7 7 C 1.30500 * 109.25865 * 359.97438 * 6 5 4 8 8 C 1.50702 * 125.65035 * 180.02562 * 7 6 5 9 9 N 1.46901 * 109.47012 * 265.05480 * 8 7 6 10 10 C 1.46904 * 110.99847 * 76.66227 * 9 8 7 11 11 C 1.50702 * 109.47103 * 285.05895 * 10 9 8 12 12 H 1.07998 * 119.99928 * 358.93076 * 11 10 9 13 13 C 1.37875 * 119.99925 * 178.93867 * 11 10 9 14 14 N 1.31515 * 120.00082 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00167 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47131 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47283 * 119.99872 * 15 13 11 18 18 H 1.48505 * 109.47083 * 240.00129 * 15 13 11 19 19 C 1.46899 * 111.00273 * 200.61440 * 9 8 7 20 20 C 1.53008 * 109.47322 * 289.71215 * 19 9 8 21 21 C 1.52985 * 109.46391 * 164.04343 * 20 19 9 22 22 C 1.52988 * 109.50792 * 315.99072 * 21 20 19 23 23 C 1.53009 * 109.46949 * 112.93329 * 22 21 20 24 24 C 1.53001 * 109.43339 * 284.04267 * 23 22 21 25 25 C 1.52985 * 109.48544 * 75.95976 * 24 23 22 26 26 C 1.52998 * 109.50734 * 247.06420 * 25 24 23 27 27 H 1.09004 * 109.46948 * 304.99247 * 1 2 3 28 28 H 1.08998 * 109.47037 * 64.99276 * 1 2 3 29 29 H 1.09000 * 109.46965 * 184.99379 * 1 2 3 30 30 H 1.08997 * 109.47252 * 239.99585 * 2 1 3 31 31 H 1.09006 * 109.46933 * 119.99766 * 2 1 3 32 32 H 1.07995 * 126.59045 * 359.97438 * 4 3 2 33 33 H 1.08001 * 125.98545 * 180.02562 * 5 4 3 34 34 H 1.09003 * 109.47510 * 25.05275 * 8 7 6 35 35 H 1.08999 * 109.47236 * 145.05749 * 8 7 6 36 36 H 1.09001 * 109.47226 * 45.05551 * 10 9 8 37 37 H 1.08997 * 109.47427 * 165.05603 * 10 9 8 38 38 H 0.97003 * 119.99837 * 180.02562 * 14 13 11 39 39 H 1.09002 * 109.46832 * 49.71397 * 19 9 8 40 40 H 1.09003 * 109.47147 * 284.04264 * 20 19 9 41 41 H 1.09002 * 109.47300 * 44.04501 * 20 19 9 42 42 H 1.08999 * 109.46951 * 195.97545 * 21 20 19 43 43 H 1.09006 * 109.45658 * 75.99598 * 21 20 19 44 44 H 1.08994 * 109.47181 * 352.93492 * 22 21 20 45 45 H 1.09000 * 109.46886 * 232.92850 * 22 21 20 46 46 H 1.08999 * 109.47690 * 164.05438 * 23 22 21 47 47 H 1.09000 * 109.48826 * 44.03337 * 23 22 21 48 48 H 1.09009 * 109.46850 * 315.95753 * 24 23 22 49 49 H 1.09000 * 109.47140 * 195.96644 * 24 23 22 50 50 H 1.09008 * 109.46099 * 127.05995 * 25 24 23 51 51 H 1.08993 * 109.46435 * 7.07838 * 25 24 23 52 52 H 1.08993 * 109.47493 * 284.02158 * 26 25 24 53 53 H 1.09003 * 109.47467 * 164.01036 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4366 2.0948 -1.0907 5 6 2.7987 3.3126 -0.6440 6 7 2.6073 3.3416 0.6831 7 6 2.1398 2.1882 1.0759 8 6 1.7928 1.8183 2.4950 9 7 2.9350 1.1342 3.1159 10 6 3.9823 2.0934 3.4916 11 6 4.7147 2.5473 2.2552 12 1 4.4419 2.1489 1.2892 13 6 5.7329 3.4712 2.3573 14 7 6.0648 3.9567 3.5337 15 14 6.6412 4.0335 0.8249 16 1 6.0814 3.3419 -0.3641 17 1 6.4815 5.5012 0.6653 18 1 8.0833 3.7037 0.9553 19 6 2.5066 0.3414 4.2760 20 6 2.1013 1.2804 5.4140 21 6 1.2945 0.5017 6.4547 22 6 0.2772 -0.3948 5.7462 23 6 0.6501 -1.8623 5.9664 24 6 1.8359 -2.2262 5.0706 25 6 3.1205 -1.6438 5.6629 26 6 3.6603 -0.5513 4.7378 27 1 -0.3633 0.5894 0.8419 28 1 -0.3633 0.4344 -0.9313 29 1 -0.3633 -1.0238 0.0895 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.4699 1.7478 -2.1128 33 1 3.1769 4.1237 -1.2487 34 1 1.5596 2.7213 3.0593 35 1 0.9277 1.1553 2.4965 36 1 3.5276 2.9545 3.9813 37 1 4.6844 1.6157 4.1749 38 1 6.7810 4.6070 3.6054 39 1 1.6556 -0.2800 3.9971 40 1 2.9958 1.6922 5.8814 41 1 1.4928 2.0925 5.0158 42 1 0.7706 1.2012 7.1061 43 1 1.9685 -0.1141 7.0503 44 1 0.2808 -0.1753 4.6786 45 1 -0.7169 -0.2077 6.1523 46 1 -0.2016 -2.4951 5.7168 47 1 0.9230 -2.0154 7.0105 48 1 1.6771 -1.8158 4.0732 49 1 1.9241 -3.3107 5.0072 50 1 3.8645 -2.4341 5.7644 51 1 2.9077 -1.2173 6.6431 52 1 4.1337 -1.0110 3.8703 53 1 4.3930 0.0507 5.2752 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207143332.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:40 Heat of formation + Delta-G solvation = 73.976968 kcal Electronic energy + Delta-G solvation = -29798.733762 eV Core-core repulsion = 26285.836291 eV Total energy + Delta-G solvation = -3512.897471 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.232 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.36240 -39.58392 -36.04206 -34.48909 -32.62043 -32.38930 -31.58707 -29.68986 -29.07591 -27.15909 -25.99663 -25.52988 -23.77607 -23.28001 -22.25443 -20.91770 -20.62940 -20.48352 -18.89253 -18.26011 -16.59828 -16.48542 -15.67303 -14.98727 -14.61717 -14.58072 -14.23854 -14.03037 -13.96357 -13.83818 -13.63392 -13.39311 -13.12029 -13.05625 -12.82797 -12.26761 -12.24658 -11.98049 -11.85958 -11.79992 -11.58244 -11.23231 -11.17532 -10.98661 -10.94490 -10.82815 -10.75772 -10.59658 -10.37612 -10.25201 -10.23176 -9.79138 -9.47357 -9.36906 -9.04924 -8.93863 -8.62978 -8.13773 -7.50531 -7.24475 -5.74957 -3.67936 2.76257 3.41541 3.49148 3.55708 3.63057 4.02633 4.67271 4.75780 4.86720 4.89339 4.97550 5.05781 5.12719 5.23109 5.27035 5.32884 5.39155 5.44012 5.45866 5.48571 5.54493 5.59950 5.65441 5.66677 5.73955 5.78699 5.82102 5.98488 6.03678 6.05146 6.07498 6.13122 6.17095 6.17909 6.24023 6.26015 6.32451 6.38205 6.51754 6.55839 6.62746 6.64550 6.83051 6.87709 7.04345 7.33431 7.48913 7.54874 7.93118 8.07328 8.18648 8.34687 8.73728 9.08075 9.34028 9.93003 11.37084 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.011476 B = 0.005694 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.293805 B = 4915.993117 C = 6525.768004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.104 3.896 3 N -0.453 5.453 4 C -0.081 4.081 5 C -0.028 4.028 6 N -0.447 5.447 7 C 0.250 3.750 8 C 0.149 3.851 9 N -0.531 5.531 10 C 0.195 3.805 11 C -0.466 4.466 12 H 0.064 0.936 13 C 0.056 3.944 14 N -0.910 5.910 15 Si 0.889 3.111 16 H -0.273 1.273 17 H -0.288 1.288 18 H -0.294 1.294 19 C 0.073 3.927 20 C -0.149 4.149 21 C -0.123 4.123 22 C -0.127 4.127 23 C -0.117 4.117 24 C -0.127 4.127 25 C -0.125 4.125 26 C -0.106 4.106 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.159 0.841 33 H 0.154 0.846 34 H 0.058 0.942 35 H 0.062 0.938 36 H -0.003 1.003 37 H 0.029 0.971 38 H 0.254 0.746 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.053 0.947 46 H 0.054 0.946 47 H 0.060 0.940 48 H 0.074 0.926 49 H 0.053 0.947 50 H 0.054 0.946 51 H 0.068 0.932 52 H 0.068 0.932 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.287 -12.670 -0.113 18.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.019 4.019 3 N -0.137 5.137 4 C -0.214 4.214 5 C -0.178 4.178 6 N -0.164 5.164 7 C -0.013 4.013 8 C 0.019 3.981 9 N -0.255 5.255 10 C 0.070 3.930 11 C -0.505 4.505 12 H 0.082 0.918 13 C -0.142 4.142 14 N -0.552 5.552 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.214 1.214 18 H -0.221 1.221 19 C -0.035 4.035 20 C -0.189 4.189 21 C -0.161 4.161 22 C -0.164 4.164 23 C -0.154 4.154 24 C -0.165 4.165 25 C -0.162 4.162 26 C -0.144 4.144 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.177 0.823 33 H 0.171 0.829 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.015 0.985 37 H 0.047 0.953 38 H 0.063 0.937 39 H 0.106 0.894 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.079 0.921 48 H 0.093 0.907 49 H 0.071 0.929 50 H 0.073 0.927 51 H 0.087 0.913 52 H 0.086 0.914 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.849 -12.335 0.099 17.812 hybrid contribution 0.388 0.413 -0.906 1.069 sum -12.462 -11.922 -0.807 17.265 Atomic orbital electron populations 1.22159 0.95033 1.02448 1.02788 1.21676 0.94585 0.81334 1.04313 1.45296 1.49064 1.11796 1.07533 1.22338 1.11576 0.95023 0.92451 1.22108 1.06584 0.96837 0.92246 1.70426 1.14470 1.21313 1.10210 1.22813 1.01869 0.86499 0.90151 1.20130 0.92787 0.97698 0.87486 1.62410 1.09095 1.27465 1.26530 1.19832 0.88138 0.88264 0.96746 1.21175 1.14479 1.21360 0.93524 0.91794 1.24778 0.97523 0.96629 0.95293 1.69965 1.30949 1.31645 1.22666 0.86552 0.78646 0.78456 0.84444 1.19738 1.21442 1.22132 1.22242 0.97473 0.94537 0.89226 1.22319 1.00321 0.98730 0.97487 1.21812 0.97699 0.98352 0.98206 1.21815 0.98311 0.94794 1.01491 1.21699 0.97798 0.96185 0.99766 1.21822 0.94816 0.99737 1.00082 1.21850 0.96564 0.98058 0.99762 1.21598 0.97520 0.96214 0.99099 0.91917 0.92328 0.91147 0.89979 0.88708 0.82320 0.82864 0.92361 0.91971 0.98547 0.95302 0.93667 0.89446 0.91326 0.92433 0.92966 0.91103 0.91068 0.92857 0.92772 0.92140 0.90730 0.92869 0.92720 0.91316 0.91359 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 10.23 37.16 0.38 -1.28 16 2 C 0.10 1.31 6.46 -4.04 -0.03 1.28 16 3 N -0.45 -7.77 2.75 -113.90 -0.31 -8.08 16 4 C -0.08 -1.41 11.57 -16.56 -0.19 -1.60 16 5 C -0.03 -0.58 11.76 -17.82 -0.21 -0.78 16 6 N -0.45 -10.42 9.22 -10.82 -0.10 -10.52 16 7 C 0.25 5.08 5.34 -155.42 -0.83 4.25 16 8 C 0.15 2.79 4.53 -4.97 -0.02 2.76 16 9 N -0.53 -10.51 4.39 -229.50 -1.01 -11.52 16 10 C 0.19 4.92 3.51 -4.97 -0.02 4.90 16 11 C -0.47 -13.23 7.16 -34.44 -0.25 -13.48 16 12 H 0.06 1.86 5.53 -52.49 -0.29 1.57 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.91 -28.16 13.29 55.43 0.74 -27.43 16 15 Si 0.89 23.60 29.54 -169.99 -5.02 18.58 16 16 H -0.27 -7.16 7.11 56.52 0.40 -6.75 16 17 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 18 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 19 C 0.07 1.16 1.57 -67.70 -0.11 1.05 16 20 C -0.15 -2.34 4.04 -26.73 -0.11 -2.45 16 21 C -0.12 -1.52 5.48 -26.75 -0.15 -1.66 16 22 C -0.13 -1.36 5.47 -26.73 -0.15 -1.50 16 23 C -0.12 -1.13 5.59 -26.73 -0.15 -1.28 16 24 C -0.13 -1.35 5.47 -26.74 -0.15 -1.50 16 25 C -0.12 -1.52 5.48 -26.74 -0.15 -1.66 16 26 C -0.11 -1.67 4.56 -26.73 -0.12 -1.79 16 27 H 0.06 0.68 7.29 -51.93 -0.38 0.31 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.89 8.13 -51.93 -0.42 0.47 16 31 H 0.09 1.24 8.02 -51.93 -0.42 0.82 16 32 H 0.16 2.16 8.06 -52.49 -0.42 1.73 16 33 H 0.15 2.86 8.06 -52.49 -0.42 2.44 16 34 H 0.06 1.19 6.87 -51.93 -0.36 0.84 16 35 H 0.06 0.95 6.69 -51.93 -0.35 0.60 16 36 H 0.00 -0.09 7.30 -51.93 -0.38 -0.47 16 37 H 0.03 0.78 6.22 -51.93 -0.32 0.46 16 38 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.09 1.21 2.50 -51.93 -0.13 1.08 16 40 H 0.07 1.24 7.35 -51.93 -0.38 0.86 16 41 H 0.06 0.96 6.66 -51.93 -0.35 0.61 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.85 4.69 -51.93 -0.24 0.61 16 44 H 0.07 0.81 5.47 -51.93 -0.28 0.53 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.57 7.47 -51.93 -0.39 0.18 16 48 H 0.07 0.85 5.47 -51.92 -0.28 0.57 16 49 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 51 H 0.07 0.82 4.69 -51.93 -0.24 0.58 16 52 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 53 H 0.06 1.16 6.67 -51.93 -0.35 0.82 16 LS Contribution 380.79 15.07 5.74 5.74 Total: -1.00 -33.06 380.79 -11.22 -44.28 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -8.92 Total: 2.12 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -2.33 Total: -13.17 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: -0.68 Total: -57.55 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -5.02 Total: 18.58 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.06 -11.22 -44.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207143332.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.260 kcal (2) G-P(sol) polarization free energy of solvation -33.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds