Wall clock time and date at job start Tue Mar 31 2020 13:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99645 * 2 1 4 4 H 1.48499 * 109.47228 * 269.99407 * 3 2 1 5 5 H 1.48501 * 109.47380 * 30.00203 * 3 2 1 6 6 H 1.48507 * 109.46871 * 149.99640 * 3 2 1 7 7 C 1.37870 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00443 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00332 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47012 * 300.00088 * 9 7 2 11 11 C 1.53007 * 109.47145 * 59.99720 * 9 7 2 12 12 Cl 1.80302 * 109.47354 * 185.00443 * 11 9 7 13 13 O 1.42893 * 109.47542 * 179.97438 * 9 7 2 14 14 C 1.35921 * 117.00246 * 146.89434 * 13 9 7 15 15 C 1.38773 * 120.02757 * 356.74051 * 14 13 9 16 16 C 1.38164 * 120.06116 * 179.97438 * 15 14 13 17 17 C 1.38205 * 120.12119 * 0.02562 * 16 15 14 18 18 C 1.38730 * 120.06056 * 0.02562 * 17 16 15 19 19 O 1.35913 * 120.03347 * 180.02562 * 18 17 16 20 20 C 1.38675 * 120.03278 * 176.46337 * 14 13 9 21 21 Br 1.89101 * 120.05769 * 359.97403 * 20 14 13 22 22 H 0.96994 * 120.00325 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47072 * 305.00553 * 11 9 7 24 24 H 1.08998 * 109.46664 * 65.00269 * 11 9 7 25 25 H 1.08005 * 119.97437 * 0.02562 * 15 14 13 26 26 H 1.07996 * 119.94065 * 180.02562 * 16 15 14 27 27 H 1.07996 * 119.96944 * 179.97438 * 17 16 15 28 28 H 0.96695 * 114.00395 * 89.99506 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 6 0.3719 -2.5805 -1.2490 12 17 -0.6387 -4.0720 -1.1769 13 8 2.1797 -3.5852 0.0005 14 6 1.8096 -4.7135 0.6620 15 6 0.6077 -4.7498 1.3546 16 6 0.2306 -5.8966 2.0268 17 6 1.0491 -7.0101 2.0119 18 6 2.2522 -6.9790 1.3219 19 8 3.0565 -8.0745 1.3072 20 6 2.6301 -5.8313 0.6406 21 35 4.2647 -5.7883 -0.3093 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2755 -1.7048 -1.2954 24 1 1.0040 -2.6124 -2.1365 25 1 -0.0341 -3.8812 1.3676 26 1 -0.7054 -5.9228 2.5648 27 1 0.7521 -7.9050 2.5384 28 1 2.8799 -8.6823 0.5761 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229140037.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:37 Heat of formation + Delta-G solvation = -78.725487 kcal Electronic energy + Delta-G solvation = -17060.112476 eV Core-core repulsion = 13955.265073 eV Total energy + Delta-G solvation = -3104.847403 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 319.960 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.24071 -39.49222 -37.13495 -36.52416 -35.33990 -33.09382 -31.41369 -30.20087 -29.62814 -27.28137 -24.53083 -23.36795 -22.21676 -19.68504 -18.94905 -17.94932 -17.28969 -16.95586 -16.48276 -16.30405 -15.66241 -15.22571 -14.75673 -14.50791 -13.93427 -13.84244 -13.47824 -13.06580 -12.97636 -12.80518 -12.57849 -12.36898 -12.03666 -11.79763 -11.71981 -11.42114 -11.19691 -11.02435 -10.93759 -10.58074 -9.56761 -8.98112 -8.38136 -6.52810 0.09118 0.39846 0.79410 1.39362 1.43472 1.53421 1.59747 2.22234 2.49410 2.65530 2.96575 3.33949 3.98381 4.05311 4.17538 4.30547 4.40832 4.54172 4.69882 4.86020 5.13598 5.21316 5.33456 5.44972 5.53745 5.68995 5.83118 6.42397 6.73894 6.75719 7.19109 8.68481 Molecular weight = 319.96amu Principal moments of inertia in cm(-1) A = 0.016969 B = 0.005891 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.628185 B = 4751.685949 C = 5626.232789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.031 3.969 3 Si 0.973 3.027 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.211 3.789 10 H 0.039 0.961 11 C -0.026 4.026 12 Cl -0.219 7.219 13 O -0.312 6.312 14 C 0.168 3.832 15 C -0.213 4.213 16 C -0.048 4.048 17 C -0.181 4.181 18 C 0.165 3.835 19 O -0.489 6.489 20 C -0.187 4.187 21 Br -0.043 7.043 22 H 0.276 0.724 23 H 0.119 0.881 24 H 0.073 0.927 25 H 0.130 0.870 26 H 0.160 0.840 27 H 0.166 0.834 28 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.452 -12.590 1.056 12.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.170 4.170 3 Si 0.797 3.203 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.196 1.196 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.156 3.844 10 H 0.056 0.944 11 C -0.089 4.089 12 Cl -0.193 7.193 13 O -0.225 6.225 14 C 0.119 3.881 15 C -0.232 4.232 16 C -0.066 4.066 17 C -0.200 4.200 18 C 0.118 3.882 19 O -0.302 6.302 20 C -0.267 4.267 21 Br 0.042 6.958 22 H 0.086 0.914 23 H 0.137 0.863 24 H 0.091 0.909 25 H 0.147 0.853 26 H 0.178 0.822 27 H 0.183 0.817 28 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 2.250 -12.258 1.074 12.509 hybrid contribution -0.415 0.865 -0.382 1.033 sum 1.835 -11.393 0.691 11.561 Atomic orbital electron populations 1.69858 1.06869 1.29001 1.48635 1.25627 0.95913 1.02320 0.93177 0.85308 0.78442 0.77812 0.78738 1.19472 1.19997 1.19622 1.21194 0.94071 0.89323 1.53819 0.91817 1.20368 0.87336 0.82820 0.93915 0.94395 1.25406 0.95152 0.87109 1.01225 1.98632 1.75059 1.46619 1.98983 1.86195 1.46180 1.21673 1.68428 1.18844 0.92374 0.86509 0.90377 1.21523 0.97123 1.01655 1.02904 1.21220 0.99714 0.90696 0.94974 1.21453 0.93077 1.01196 1.04244 1.17896 0.89775 0.85898 0.94617 1.84753 1.58604 1.32497 1.54330 1.21690 0.97139 0.97141 1.10777 1.96545 1.26266 1.99017 1.74011 0.91413 0.86280 0.90879 0.85266 0.82234 0.81677 0.72903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.22 11.29 21.45 0.24 -45.97 15 2 C 0.03 1.57 5.29 84.65 0.45 2.01 15 3 Si 0.97 40.30 29.54 68.60 2.03 42.32 15 4 H -0.27 -10.85 7.11 99.48 0.71 -10.14 15 5 H -0.27 -11.00 7.11 99.48 0.71 -10.29 15 6 H -0.27 -11.29 7.11 99.48 0.71 -10.58 15 7 C -0.55 -28.57 8.89 25.60 0.23 -28.34 15 8 H 0.06 3.42 7.81 -2.91 -0.02 3.40 15 9 C 0.21 10.17 2.19 29.85 0.07 10.24 15 10 H 0.04 1.94 5.39 -2.39 -0.01 1.92 15 11 C -0.03 -1.17 6.17 71.98 0.44 -0.72 15 12 Cl -0.22 -8.58 25.60 -2.72 -0.07 -8.65 15 13 O -0.31 -14.42 9.06 -92.66 -0.84 -15.26 15 14 C 0.17 6.74 5.96 22.50 0.13 6.88 15 15 C -0.21 -7.70 7.04 22.38 0.16 -7.54 15 16 C -0.05 -1.32 10.04 22.24 0.22 -1.10 15 17 C -0.18 -4.53 9.98 22.38 0.22 -4.31 15 18 C 0.17 4.80 6.69 22.50 0.15 4.95 15 19 O -0.49 -11.62 12.84 -92.57 -1.19 -12.81 15 20 C -0.19 -6.68 6.25 22.49 0.14 -6.54 15 21 Br -0.04 -1.48 32.61 -20.37 -0.66 -2.14 15 22 H 0.28 13.27 8.31 -92.71 -0.77 12.50 15 23 H 0.12 5.75 5.95 -2.39 -0.01 5.73 15 24 H 0.07 3.27 8.14 -2.39 -0.02 3.25 15 25 H 0.13 5.12 5.10 -2.91 -0.01 5.10 15 26 H 0.16 3.34 8.06 -2.91 -0.02 3.31 15 27 H 0.17 2.96 8.06 -2.91 -0.02 2.93 15 28 H 0.41 5.93 9.06 -74.06 -0.67 5.26 15 Total: -1.00 -56.88 276.65 2.27 -54.61 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.55 Total: 12.39 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: 2.21 Total: -24.48 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 0.24 Total: -45.97 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -2.03 Total: -28.08 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.32 kcal Atomic # 17 Polarization: -8.58 SS G_CDS: -0.07 Total: -8.65 kcal Atomic # 35 Polarization: -1.48 SS G_CDS: -0.66 Total: -2.14 kcal Total: -56.88 2.27 -54.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229140037.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.118 kcal (2) G-P(sol) polarization free energy of solvation -56.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds