Wall clock time and date at job start Tue Mar 31 2020 12:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46802 * 2 1 4 4 C 1.53005 * 109.46802 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47027 * 183.50266 * 4 3 2 6 6 C 1.36932 * 119.99819 * 267.55560 * 5 4 3 7 7 H 1.07998 * 120.00102 * 312.04933 * 6 5 4 8 8 C 1.38810 * 120.00130 * 132.05407 * 6 5 4 9 9 N 1.31625 * 119.99825 * 326.97147 * 8 6 5 10 10 Si 1.86800 * 120.00042 * 146.96842 * 8 6 5 11 11 H 1.48499 * 109.47408 * 90.00187 * 10 8 6 12 12 H 1.48503 * 109.47077 * 209.99960 * 10 8 6 13 13 H 1.48495 * 109.47315 * 329.99824 * 10 8 6 14 14 C 1.46504 * 119.99797 * 87.55314 * 5 4 3 15 15 C 1.50705 * 109.46817 * 84.15666 * 14 5 4 16 16 C 1.38293 * 119.94208 * 259.39945 * 15 14 5 17 17 C 1.38123 * 120.05358 * 179.70217 * 16 15 14 18 18 C 1.50698 * 120.02348 * 180.31988 * 17 16 15 19 19 C 1.52998 * 109.47435 * 300.27342 * 18 17 16 20 20 C 1.53000 * 109.47263 * 60.27708 * 18 17 16 21 21 C 1.38749 * 119.94416 * 0.59488 * 17 16 15 22 22 O 1.35899 * 120.05602 * 179.69528 * 21 17 16 23 23 C 1.42902 * 117.00143 * 179.72480 * 22 21 17 24 24 C 1.38710 * 119.88921 * 359.43017 * 21 17 16 25 25 C 1.38170 * 119.94322 * 0.26839 * 24 21 17 26 26 C 1.50699 * 119.97175 * 179.97438 * 25 24 21 27 27 H 1.09004 * 109.47256 * 299.99958 * 1 2 3 28 28 H 1.09005 * 109.47060 * 59.99786 * 1 2 3 29 29 H 1.08997 * 109.46823 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47090 * 240.00262 * 2 1 3 31 31 H 1.09003 * 109.46767 * 119.99762 * 2 1 3 32 32 H 1.09004 * 109.47181 * 59.99996 * 3 2 1 33 33 H 1.08995 * 109.47479 * 300.00069 * 3 2 1 34 34 H 1.09001 * 109.47320 * 63.50155 * 4 3 2 35 35 H 1.09008 * 109.46861 * 303.49890 * 4 3 2 36 36 H 0.97004 * 119.99676 * 180.02562 * 9 8 6 37 37 H 1.08991 * 109.47314 * 324.15434 * 14 5 4 38 38 H 1.09001 * 109.46613 * 204.15211 * 14 5 4 39 39 H 1.07998 * 119.97056 * 359.97438 * 16 15 14 40 40 H 1.09007 * 109.46573 * 180.27493 * 18 17 16 41 41 H 1.09000 * 109.47166 * 60.00106 * 19 18 17 42 42 H 1.09000 * 109.47367 * 180.02562 * 19 18 17 43 43 H 1.09006 * 109.47161 * 300.00395 * 19 18 17 44 44 H 1.09001 * 109.47075 * 59.99565 * 20 18 17 45 45 H 1.09003 * 109.47284 * 179.97438 * 20 18 17 46 46 H 1.08994 * 109.47220 * 299.99767 * 20 18 17 47 47 H 1.08995 * 109.47318 * 180.02562 * 23 22 21 48 48 H 1.09004 * 109.46356 * 60.00473 * 23 22 21 49 49 H 1.08999 * 109.47128 * 300.01116 * 23 22 21 50 50 H 1.08003 * 120.02946 * 180.25422 * 24 21 17 51 51 H 1.09004 * 109.46870 * 87.07440 * 26 25 24 52 52 H 1.08999 * 109.47317 * 207.07115 * 26 25 24 53 53 H 1.09000 * 109.47237 * 327.07606 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8212 0.0837 6 6 4.3338 3.5212 -1.0605 7 1 4.9282 3.0688 -1.8404 8 6 3.8490 4.8123 -1.2179 9 7 2.6885 5.1478 -0.6952 10 14 4.8437 6.0736 -2.1713 11 1 4.4635 6.0222 -3.6059 12 1 4.5674 7.4304 -1.6345 13 1 6.2908 5.7713 -2.0316 14 6 4.2520 3.4508 1.3923 15 6 5.6052 3.0719 1.9368 16 6 5.7114 2.0761 2.8905 17 6 6.9511 1.7227 3.3866 18 6 7.0666 0.6325 4.4205 19 6 6.2629 1.0208 5.6632 20 6 6.5180 -0.6752 3.8464 21 6 8.0892 2.3762 2.9363 22 8 9.3094 2.0346 3.4274 23 6 10.4377 2.7454 2.9137 24 6 7.9800 3.3750 1.9800 25 6 6.7382 3.7206 1.4823 26 6 6.6188 4.8060 0.4438 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9330 0.9841 -0.9206 35 1 3.9337 0.8752 0.8562 36 1 2.3496 6.0500 -0.8056 37 1 3.4762 3.1102 2.0778 38 1 4.1933 4.5341 1.2864 39 1 4.8246 1.5713 3.2444 40 1 8.1139 0.4990 4.6922 41 1 5.2158 1.1543 5.3916 42 1 6.3469 0.2325 6.4112 43 1 6.6538 1.9525 6.0722 44 1 7.0906 -0.9519 2.9611 45 1 6.6020 -1.4639 4.5941 46 1 5.4709 -0.5418 3.5747 47 1 11.3468 2.3754 3.3878 48 1 10.3241 3.8087 3.1252 49 1 10.5027 2.5941 1.8363 50 1 8.8649 3.8824 1.6249 51 1 6.7452 4.3743 -0.5491 52 1 5.6355 5.2708 0.5153 53 1 7.3894 5.5580 0.6138 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231629355.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:56 Heat of formation + Delta-G solvation = -24.857428 kcal Electronic energy + Delta-G solvation = -28641.546950 eV Core-core repulsion = 25092.070947 eV Total energy + Delta-G solvation = -3549.476003 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.03682 -37.70821 -36.22831 -35.25742 -33.74891 -31.57412 -30.92973 -30.14073 -27.98606 -27.38647 -26.94662 -26.37121 -24.69449 -23.75972 -22.13411 -21.32663 -20.61579 -20.01015 -18.99860 -17.10367 -16.72132 -16.21236 -15.50353 -14.87564 -14.72597 -14.38964 -14.07621 -14.04309 -13.79368 -13.60123 -13.40285 -13.19701 -13.18508 -13.03093 -12.61003 -12.08434 -12.07569 -12.04465 -11.82395 -11.67629 -11.60815 -11.47220 -11.40409 -10.98862 -10.90033 -10.77771 -10.64868 -10.51456 -10.46731 -10.41581 -10.22905 -10.19630 -10.02723 -9.84224 -9.68307 -9.51139 -8.34875 -8.10113 -7.38095 -6.52155 -5.84342 -3.40594 1.90683 2.04861 3.29870 3.40896 3.43644 3.56652 4.26941 4.47098 4.97357 5.07612 5.16780 5.18722 5.24621 5.40233 5.42128 5.45456 5.51105 5.54642 5.60509 5.72748 5.75674 5.78085 5.80286 5.89333 5.92081 6.01135 6.06831 6.12555 6.17192 6.18189 6.28850 6.33687 6.42482 6.44178 6.47060 6.51580 6.55825 6.56212 6.57990 6.68583 6.77497 6.82862 6.91436 7.03447 7.15092 7.18905 7.24996 7.40372 7.47374 7.55977 7.85060 7.85384 8.58828 9.17155 9.76362 10.48598 11.08429 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.009456 B = 0.005421 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2960.247365 B = 5164.124174 C = 7546.101491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.129 4.129 4 C 0.152 3.848 5 N -0.572 5.572 6 C -0.275 4.275 7 H 0.051 0.949 8 C 0.039 3.961 9 N -0.857 5.857 10 Si 0.859 3.141 11 H -0.287 1.287 12 H -0.288 1.288 13 H -0.266 1.266 14 C 0.197 3.803 15 C -0.111 4.111 16 C -0.076 4.076 17 C -0.120 4.120 18 C -0.045 4.045 19 C -0.141 4.141 20 C -0.140 4.140 21 C 0.109 3.891 22 O -0.322 6.322 23 C 0.031 3.969 24 C -0.212 4.212 25 C -0.023 4.023 26 C -0.112 4.112 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.042 0.958 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.040 0.960 35 H 0.027 0.973 36 H 0.254 0.746 37 H 0.033 0.967 38 H 0.072 0.928 39 H 0.118 0.882 40 H 0.077 0.923 41 H 0.056 0.944 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.053 0.947 45 H 0.050 0.950 46 H 0.056 0.944 47 H 0.091 0.909 48 H 0.050 0.950 49 H 0.051 0.949 50 H 0.117 0.883 51 H 0.085 0.915 52 H 0.082 0.918 53 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.527 -6.723 8.590 13.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.169 4.169 4 C 0.026 3.974 5 N -0.291 5.291 6 C -0.404 4.404 7 H 0.069 0.931 8 C -0.165 4.165 9 N -0.494 5.494 10 Si 0.687 3.313 11 H -0.214 1.214 12 H -0.214 1.214 13 H -0.191 1.191 14 C 0.071 3.929 15 C -0.114 4.114 16 C -0.095 4.095 17 C -0.121 4.121 18 C -0.064 4.064 19 C -0.198 4.198 20 C -0.198 4.198 21 C 0.064 3.936 22 O -0.236 6.236 23 C -0.064 4.064 24 C -0.231 4.231 25 C -0.024 4.024 26 C -0.168 4.168 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.058 0.942 35 H 0.045 0.955 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.090 0.910 39 H 0.136 0.864 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.110 0.890 48 H 0.069 0.931 49 H 0.070 0.930 50 H 0.134 0.866 51 H 0.103 0.897 52 H 0.100 0.900 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.428 -6.706 8.720 13.274 hybrid contribution 0.581 1.073 -0.786 1.452 sum 8.010 -5.634 7.934 12.603 Atomic orbital electron populations 1.21754 0.96918 1.00210 1.01648 1.21544 0.94991 0.98939 1.00664 1.22108 0.99082 0.93465 1.02250 1.20903 0.91243 0.87366 0.97870 1.43590 1.74317 1.10391 1.00850 1.18626 1.27766 0.96746 0.97265 0.93143 1.25245 0.94031 1.00425 0.96798 1.70309 1.14420 1.18866 1.45807 0.87124 0.82242 0.81834 0.80125 1.21429 1.21412 1.19084 1.19684 0.88013 0.98522 0.86680 1.21004 0.98654 0.96244 0.95515 1.20665 0.95548 0.96836 0.96485 1.18999 0.90914 1.00295 1.01896 1.19855 1.00416 0.92837 0.93258 1.21839 1.00270 1.00859 0.96827 1.21831 1.01322 0.96153 1.00469 1.18630 0.84337 0.95532 0.95078 1.85974 1.13268 1.60578 1.63797 1.22921 0.87374 0.96718 0.99423 1.20997 0.98338 1.01744 1.02018 1.19582 0.91467 0.96233 0.95145 1.21092 1.02238 0.95412 0.98051 0.93175 0.92963 0.93883 0.92889 0.93149 0.93189 0.91691 0.94160 0.95453 0.93588 0.94898 0.91029 0.86418 0.90441 0.92520 0.93039 0.92892 0.92824 0.93077 0.92482 0.89009 0.93109 0.93031 0.86557 0.89679 0.89973 0.94250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 37.16 0.37 -1.76 16 2 C -0.12 -1.96 5.93 -26.73 -0.16 -2.12 16 3 C -0.13 -2.56 5.54 -26.73 -0.15 -2.71 16 4 C 0.15 3.19 5.69 -4.04 -0.02 3.16 16 5 N -0.57 -13.36 2.34 -174.60 -0.41 -13.77 16 6 C -0.27 -7.01 7.03 -15.06 -0.11 -7.12 16 7 H 0.05 1.35 8.01 -52.49 -0.42 0.93 16 8 C 0.04 1.01 3.57 -17.43 -0.06 0.95 16 9 N -0.86 -23.36 13.20 55.49 0.73 -22.63 16 10 Si 0.86 19.98 27.02 -169.99 -4.59 15.39 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 13 H -0.27 -5.89 6.05 56.52 0.34 -5.55 16 14 C 0.20 4.34 5.05 -5.19 -0.03 4.31 16 15 C -0.11 -2.20 5.45 -104.60 -0.57 -2.77 16 16 C -0.08 -1.35 8.33 -39.60 -0.33 -1.68 16 17 C -0.12 -1.98 4.79 -104.48 -0.50 -2.48 16 18 C -0.05 -0.62 3.06 -91.77 -0.28 -0.90 16 19 C -0.14 -1.71 9.00 37.16 0.33 -1.38 16 20 C -0.14 -1.77 9.01 37.16 0.33 -1.44 16 21 C 0.11 1.83 6.66 -39.22 -0.26 1.56 16 22 O -0.32 -4.81 9.26 -19.42 -0.18 -4.99 16 23 C 0.03 0.34 9.81 101.05 0.99 1.34 16 24 C -0.21 -3.69 8.70 -39.43 -0.34 -4.04 16 25 C -0.02 -0.46 5.88 -104.65 -0.62 -1.07 16 26 C -0.11 -2.24 6.88 36.00 0.25 -1.99 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.04 0.86 8.02 -51.93 -0.42 0.45 16 35 H 0.03 0.54 8.09 -51.92 -0.42 0.12 16 36 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 37 H 0.03 0.71 7.97 -51.93 -0.41 0.29 16 38 H 0.07 1.74 5.21 -51.93 -0.27 1.47 16 39 H 0.12 1.93 7.07 -52.49 -0.37 1.56 16 40 H 0.08 1.08 6.99 -51.93 -0.36 0.72 16 41 H 0.06 0.69 7.37 -51.93 -0.38 0.31 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.73 7.41 -51.93 -0.38 0.35 16 47 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 49 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 50 H 0.12 1.78 6.30 -52.48 -0.33 1.45 16 51 H 0.08 1.83 6.07 -51.93 -0.32 1.51 16 52 H 0.08 1.81 3.86 -51.93 -0.20 1.61 16 53 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 404.21 15.07 6.09 6.09 Total: -1.00 -27.17 404.21 -9.28 -36.45 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -9.77 Total: 3.57 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -1.15 Total: -20.12 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.32 Total: -36.40 kcal Atomic # 8 Polarization: -4.81 SS G_CDS: -0.18 Total: -4.99 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.59 Total: 15.39 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -27.17 -9.28 -36.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231629355.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.591 kcal (2) G-P(sol) polarization free energy of solvation -27.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds