Wall clock time and date at job start Tue Mar 31 2020 12:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46802 * 2 1 4 4 C 1.53005 * 109.46802 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47027 * 183.50266 * 4 3 2 6 6 C 1.36932 * 119.99819 * 267.55560 * 5 4 3 7 7 H 1.07998 * 120.00102 * 312.04933 * 6 5 4 8 8 C 1.38810 * 120.00130 * 132.05407 * 6 5 4 9 9 N 1.31625 * 119.99825 * 326.97147 * 8 6 5 10 10 Si 1.86800 * 120.00042 * 146.96842 * 8 6 5 11 11 H 1.48499 * 109.47408 * 90.00187 * 10 8 6 12 12 H 1.48503 * 109.47077 * 209.99960 * 10 8 6 13 13 H 1.48495 * 109.47315 * 329.99824 * 10 8 6 14 14 C 1.46504 * 119.99797 * 87.55314 * 5 4 3 15 15 C 1.50705 * 109.46817 * 84.15666 * 14 5 4 16 16 C 1.38293 * 119.94208 * 259.39945 * 15 14 5 17 17 C 1.38123 * 120.05358 * 179.70217 * 16 15 14 18 18 C 1.50698 * 120.02348 * 180.31988 * 17 16 15 19 19 C 1.52998 * 109.47435 * 300.27342 * 18 17 16 20 20 C 1.53000 * 109.47263 * 60.27708 * 18 17 16 21 21 C 1.38749 * 119.94416 * 0.59488 * 17 16 15 22 22 O 1.35899 * 120.05602 * 179.69528 * 21 17 16 23 23 C 1.42902 * 117.00143 * 179.72480 * 22 21 17 24 24 C 1.38710 * 119.88921 * 359.43017 * 21 17 16 25 25 C 1.38170 * 119.94322 * 0.26839 * 24 21 17 26 26 C 1.50699 * 119.97175 * 179.97438 * 25 24 21 27 27 H 1.09004 * 109.47256 * 299.99958 * 1 2 3 28 28 H 1.09005 * 109.47060 * 59.99786 * 1 2 3 29 29 H 1.08997 * 109.46823 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47090 * 240.00262 * 2 1 3 31 31 H 1.09003 * 109.46767 * 119.99762 * 2 1 3 32 32 H 1.09004 * 109.47181 * 59.99996 * 3 2 1 33 33 H 1.08995 * 109.47479 * 300.00069 * 3 2 1 34 34 H 1.09001 * 109.47320 * 63.50155 * 4 3 2 35 35 H 1.09008 * 109.46861 * 303.49890 * 4 3 2 36 36 H 0.97004 * 119.99676 * 180.02562 * 9 8 6 37 37 H 1.08991 * 109.47314 * 324.15434 * 14 5 4 38 38 H 1.09001 * 109.46613 * 204.15211 * 14 5 4 39 39 H 1.07998 * 119.97056 * 359.97438 * 16 15 14 40 40 H 1.09007 * 109.46573 * 180.27493 * 18 17 16 41 41 H 1.09000 * 109.47166 * 60.00106 * 19 18 17 42 42 H 1.09000 * 109.47367 * 180.02562 * 19 18 17 43 43 H 1.09006 * 109.47161 * 300.00395 * 19 18 17 44 44 H 1.09001 * 109.47075 * 59.99565 * 20 18 17 45 45 H 1.09003 * 109.47284 * 179.97438 * 20 18 17 46 46 H 1.08994 * 109.47220 * 299.99767 * 20 18 17 47 47 H 1.08995 * 109.47318 * 180.02562 * 23 22 21 48 48 H 1.09004 * 109.46356 * 60.00473 * 23 22 21 49 49 H 1.08999 * 109.47128 * 300.01116 * 23 22 21 50 50 H 1.08003 * 120.02946 * 180.25422 * 24 21 17 51 51 H 1.09004 * 109.46870 * 87.07440 * 26 25 24 52 52 H 1.08999 * 109.47317 * 207.07115 * 26 25 24 53 53 H 1.09000 * 109.47237 * 327.07606 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8212 0.0837 6 6 4.3338 3.5212 -1.0605 7 1 4.9282 3.0688 -1.8404 8 6 3.8490 4.8123 -1.2179 9 7 2.6885 5.1478 -0.6952 10 14 4.8437 6.0736 -2.1713 11 1 4.4635 6.0222 -3.6059 12 1 4.5674 7.4304 -1.6345 13 1 6.2908 5.7713 -2.0316 14 6 4.2520 3.4508 1.3923 15 6 5.6052 3.0719 1.9368 16 6 5.7114 2.0761 2.8905 17 6 6.9511 1.7227 3.3866 18 6 7.0666 0.6325 4.4205 19 6 6.2629 1.0208 5.6632 20 6 6.5180 -0.6752 3.8464 21 6 8.0892 2.3762 2.9363 22 8 9.3094 2.0346 3.4274 23 6 10.4377 2.7454 2.9137 24 6 7.9800 3.3750 1.9800 25 6 6.7382 3.7206 1.4823 26 6 6.6188 4.8060 0.4438 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9330 0.9841 -0.9206 35 1 3.9337 0.8752 0.8562 36 1 2.3496 6.0500 -0.8056 37 1 3.4762 3.1102 2.0778 38 1 4.1933 4.5341 1.2864 39 1 4.8246 1.5713 3.2444 40 1 8.1139 0.4990 4.6922 41 1 5.2158 1.1543 5.3916 42 1 6.3469 0.2325 6.4112 43 1 6.6538 1.9525 6.0722 44 1 7.0906 -0.9519 2.9611 45 1 6.6020 -1.4639 4.5941 46 1 5.4709 -0.5418 3.5747 47 1 11.3468 2.3754 3.3878 48 1 10.3241 3.8087 3.1252 49 1 10.5027 2.5941 1.8363 50 1 8.8649 3.8824 1.6249 51 1 6.7452 4.3743 -0.5491 52 1 5.6355 5.2708 0.5153 53 1 7.3894 5.5580 0.6138 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231629355.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:55 Heat of formation + Delta-G solvation = -35.977559 kcal Electronic energy + Delta-G solvation = -28642.029155 eV Core-core repulsion = 25092.070947 eV Total energy + Delta-G solvation = -3549.958208 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.33540 -39.07277 -37.70104 -36.57421 -35.30706 -33.40825 -32.29812 -31.61736 -29.42451 -28.60063 -27.91805 -27.90613 -26.22519 -25.39160 -23.46497 -22.83261 -21.99235 -21.52824 -20.37626 -18.57870 -18.33468 -17.53612 -16.70604 -16.55697 -16.24597 -15.90592 -15.65688 -15.39661 -15.15341 -14.92260 -14.73866 -14.61093 -14.41590 -14.29966 -14.03702 -13.72212 -13.47052 -13.29557 -13.15674 -13.08835 -12.90001 -12.75569 -12.63355 -12.57832 -12.42308 -12.22104 -12.00816 -11.98982 -11.95383 -11.84233 -11.80701 -11.52746 -11.44631 -11.43268 -11.19868 -11.15508 -10.36321 -9.47997 -8.76409 -8.47449 -7.79472 -5.42081 0.51978 0.64023 1.39847 1.47924 1.54713 2.47021 2.51054 2.86799 3.18268 3.79788 3.84991 3.92263 4.12857 4.21340 4.25327 4.28846 4.36806 4.39800 4.43134 4.46313 4.47416 4.52676 4.55942 4.63139 4.72063 4.76482 4.84105 4.87478 4.88187 4.93703 4.96407 5.02378 5.05744 5.07771 5.10163 5.14065 5.15970 5.22049 5.23657 5.33182 5.37462 5.45081 5.46079 5.54626 5.59617 5.62668 5.73042 5.74388 5.80636 6.00805 6.05999 6.55686 6.58861 7.23593 7.86422 8.53611 9.07933 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.009456 B = 0.005421 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2960.247365 B = 5164.124174 C = 7546.101491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C -0.115 4.115 4 C 0.151 3.849 5 N -0.584 5.584 6 C -0.271 4.271 7 H 0.035 0.965 8 C 0.008 3.992 9 N -0.891 5.891 10 Si 0.905 3.095 11 H -0.293 1.293 12 H -0.292 1.292 13 H -0.250 1.250 14 C 0.209 3.791 15 C -0.131 4.131 16 C -0.075 4.075 17 C -0.120 4.120 18 C -0.043 4.043 19 C -0.138 4.138 20 C -0.137 4.137 21 C 0.111 3.889 22 O -0.327 6.327 23 C 0.021 3.979 24 C -0.213 4.213 25 C -0.044 4.044 26 C -0.103 4.103 27 H 0.048 0.952 28 H 0.041 0.959 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.033 0.967 33 H 0.027 0.973 34 H 0.032 0.968 35 H 0.044 0.956 36 H 0.251 0.749 37 H 0.029 0.971 38 H 0.043 0.957 39 H 0.127 0.873 40 H 0.079 0.921 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.047 0.953 44 H 0.043 0.957 45 H 0.074 0.926 46 H 0.052 0.948 47 H 0.123 0.877 48 H 0.057 0.943 49 H 0.054 0.946 50 H 0.137 0.863 51 H 0.066 0.934 52 H 0.057 0.943 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.341 -8.509 10.163 16.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.154 4.154 3 C -0.155 4.155 4 C 0.026 3.974 5 N -0.305 5.305 6 C -0.401 4.401 7 H 0.053 0.947 8 C -0.194 4.194 9 N -0.530 5.530 10 Si 0.732 3.268 11 H -0.221 1.221 12 H -0.218 1.218 13 H -0.173 1.173 14 C 0.083 3.917 15 C -0.133 4.133 16 C -0.093 4.093 17 C -0.121 4.121 18 C -0.062 4.062 19 C -0.195 4.195 20 C -0.195 4.195 21 C 0.066 3.934 22 O -0.241 6.241 23 C -0.074 4.074 24 C -0.231 4.231 25 C -0.045 4.045 26 C -0.160 4.160 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.048 0.952 38 H 0.061 0.939 39 H 0.145 0.855 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.092 0.908 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.093 0.907 46 H 0.071 0.929 47 H 0.141 0.859 48 H 0.076 0.924 49 H 0.072 0.928 50 H 0.154 0.846 51 H 0.084 0.916 52 H 0.075 0.925 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.274 -8.506 10.300 16.262 hybrid contribution 0.135 1.561 -1.200 1.974 sum 9.410 -6.944 9.100 14.818 Atomic orbital electron populations 1.21727 0.95566 1.01833 1.01158 1.21472 0.96166 0.95900 1.01819 1.21899 0.98210 0.95838 0.99514 1.20954 0.91905 0.86401 0.98120 1.43757 1.74893 1.10988 1.00814 1.18589 1.26709 0.97129 0.97656 0.94721 1.25671 0.94390 1.01518 0.97804 1.70377 1.15795 1.18821 1.48052 0.86396 0.82107 0.79806 0.78456 1.22053 1.21799 1.17337 1.19431 0.89532 0.96658 0.86042 1.20761 0.97362 0.97938 0.97271 1.20705 0.96643 0.96130 0.95847 1.19341 0.90326 1.00555 1.01891 1.19910 1.00918 0.92312 0.93029 1.21814 0.99674 1.01429 0.96565 1.21808 1.00727 0.96196 1.00741 1.18777 0.85462 0.94808 0.94354 1.85981 1.13249 1.61069 1.63798 1.23251 0.86962 0.97141 0.99997 1.21143 0.98089 1.01973 1.01918 1.19606 0.92391 0.96678 0.95781 1.20920 1.01536 0.96072 0.97428 0.93285 0.93936 0.91144 0.92241 0.91374 0.94805 0.95425 0.94910 0.93788 0.93981 0.95236 0.93904 0.85501 0.90306 0.92804 0.90786 0.93419 0.93791 0.90733 0.92871 0.85925 0.92402 0.92751 0.84565 0.91575 0.92461 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 9.91 71.98 0.71 -3.27 16 2 C -0.12 -3.55 5.93 30.60 0.18 -3.36 16 3 C -0.11 -4.65 5.54 30.60 0.17 -4.48 16 4 C 0.15 6.46 5.69 86.38 0.49 6.96 16 5 N -0.58 -28.23 2.34 -706.31 -1.65 -29.89 16 6 C -0.27 -14.34 7.03 84.03 0.59 -13.75 16 7 H 0.04 1.94 8.01 -2.91 -0.02 1.91 16 8 C 0.01 0.41 3.57 84.86 0.30 0.71 16 9 N -0.89 -50.73 13.20 21.65 0.29 -50.45 16 10 Si 0.91 42.24 27.02 68.60 1.85 44.09 16 11 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 12 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 13 H -0.25 -10.84 6.05 99.48 0.60 -10.24 16 14 C 0.21 9.55 5.05 85.63 0.43 9.98 16 15 C -0.13 -5.23 5.45 -19.85 -0.11 -5.34 16 16 C -0.07 -2.56 8.33 22.26 0.19 -2.38 16 17 C -0.12 -3.75 4.79 -19.77 -0.09 -3.84 16 18 C -0.04 -1.07 3.06 -11.54 -0.04 -1.11 16 19 C -0.14 -2.97 9.00 71.98 0.65 -2.32 16 20 C -0.14 -3.10 9.01 71.98 0.65 -2.45 16 21 C 0.11 3.51 6.66 22.51 0.15 3.66 16 22 O -0.33 -8.83 9.26 -92.42 -0.86 -9.69 16 23 C 0.02 0.40 9.81 113.37 1.11 1.51 16 24 C -0.21 -7.09 8.70 22.37 0.19 -6.89 16 25 C -0.04 -1.71 5.88 -19.88 -0.12 -1.82 16 26 C -0.10 -4.18 6.88 71.24 0.49 -3.69 16 27 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.03 1.43 8.02 -2.39 -0.02 1.41 16 35 H 0.04 1.71 8.09 -2.38 -0.02 1.69 16 36 H 0.25 13.90 8.31 -92.70 -0.77 13.12 16 37 H 0.03 1.32 7.97 -2.39 -0.02 1.30 16 38 H 0.04 2.19 5.21 -2.39 -0.01 2.18 16 39 H 0.13 4.04 7.07 -2.91 -0.02 4.02 16 40 H 0.08 1.96 6.99 -2.38 -0.02 1.94 16 41 H 0.05 1.19 7.37 -2.39 -0.02 1.17 16 42 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 44 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.05 1.23 7.41 -2.39 -0.02 1.22 16 47 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.06 1.03 7.66 -2.38 -0.02 1.01 16 49 H 0.05 1.01 7.66 -2.39 -0.02 1.00 16 50 H 0.14 3.88 6.30 -2.91 -0.02 3.86 16 51 H 0.07 2.88 6.07 -2.39 -0.01 2.87 16 52 H 0.06 2.60 3.86 -2.39 -0.01 2.59 16 53 H 0.06 2.13 8.10 -2.39 -0.02 2.11 16 Total: -1.00 -60.60 404.21 6.33 -54.26 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.75 Total: 23.57 kcal Atomic # 6 Polarization: -37.85 SS G_CDS: 5.96 Total: -31.90 kcal Atomic # 7 Polarization: -78.97 SS G_CDS: -1.37 Total: -80.34 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.86 Total: -9.69 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.85 Total: 44.09 kcal Total: -60.60 6.33 -54.26 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231629355.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.285 kcal (2) G-P(sol) polarization free energy of solvation -60.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds