Wall clock time and date at job start Tue Mar 31 2020 12:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47036 * 2 1 4 4 C 1.53005 * 109.46753 * 180.02562 * 3 2 1 5 5 N 1.46905 * 109.46858 * 181.84853 * 4 3 2 6 6 C 1.46894 * 111.00054 * 292.82737 * 5 4 3 7 7 C 1.50704 * 109.47026 * 298.13089 * 6 5 4 8 8 H 1.08005 * 119.99902 * 4.22628 * 7 6 5 9 9 C 1.37872 * 120.00154 * 184.22275 * 7 6 5 10 10 N 1.31513 * 119.99977 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 120.00222 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.46975 * 89.99420 * 11 9 7 13 13 H 1.48497 * 109.47311 * 209.99498 * 11 9 7 14 14 H 1.48496 * 109.46778 * 329.99848 * 11 9 7 15 15 C 1.46898 * 111.00163 * 168.86765 * 5 4 3 16 16 C 1.50701 * 109.47123 * 189.99933 * 15 5 4 17 17 C 1.38163 * 120.02893 * 252.58246 * 16 15 5 18 18 C 1.38245 * 120.05642 * 180.25499 * 17 16 15 19 19 C 1.38279 * 120.10893 * 359.77136 * 18 17 16 20 20 C 1.38127 * 120.05737 * 359.97438 * 19 18 17 21 21 C 1.50710 * 120.02721 * 180.02562 * 20 19 18 22 22 C 1.38708 * 120.02420 * 72.35554 * 16 15 5 23 23 O 1.35898 * 120.06205 * 359.97438 * 22 16 15 24 24 C 1.42898 * 117.00141 * 83.82390 * 23 22 16 25 25 C 1.53002 * 109.47203 * 216.16106 * 24 23 22 26 26 C 1.52995 * 109.47303 * 96.16033 * 24 23 22 27 27 H 1.09003 * 109.47224 * 300.00033 * 1 2 3 28 28 H 1.09001 * 109.47499 * 60.00081 * 1 2 3 29 29 H 1.08997 * 109.47477 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47224 * 239.99967 * 2 1 3 31 31 H 1.09001 * 109.47499 * 119.99918 * 2 1 3 32 32 H 1.08993 * 109.47585 * 60.00236 * 3 2 1 33 33 H 1.09004 * 109.47125 * 299.99538 * 3 2 1 34 34 H 1.08993 * 109.47535 * 61.84853 * 4 3 2 35 35 H 1.09000 * 109.46729 * 301.84018 * 4 3 2 36 36 H 1.09003 * 109.47457 * 58.12771 * 6 5 4 37 37 H 1.09001 * 109.47376 * 178.13211 * 6 5 4 38 38 H 0.97005 * 120.00499 * 180.02562 * 10 9 7 39 39 H 1.09003 * 109.46541 * 69.99955 * 15 5 4 40 40 H 1.08998 * 109.46799 * 310.00487 * 15 5 4 41 41 H 1.07999 * 119.97026 * 0.02562 * 17 16 15 42 42 H 1.07994 * 119.94175 * 179.75069 * 18 17 16 43 43 H 1.08004 * 119.97615 * 179.97438 * 19 18 17 44 44 H 1.08996 * 109.46508 * 272.32196 * 21 20 19 45 45 H 1.08996 * 109.46937 * 32.32130 * 21 20 19 46 46 H 1.09000 * 109.46706 * 152.32393 * 21 20 19 47 47 H 1.09007 * 109.47024 * 336.16222 * 24 23 22 48 48 H 1.08994 * 109.46999 * 300.00096 * 25 24 23 49 49 H 1.09002 * 109.47132 * 60.00063 * 25 24 23 50 50 H 1.08999 * 109.47001 * 179.97438 * 25 24 23 51 51 H 1.09001 * 109.47182 * 53.55932 * 26 24 23 52 52 H 1.08998 * 109.47286 * 173.56130 * 26 24 23 53 53 H 1.09003 * 109.47465 * 293.56278 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8268 0.0440 6 6 3.7331 3.5411 -1.1973 7 6 4.4136 2.8652 -2.3597 8 1 4.9712 1.9535 -2.2033 9 6 4.3243 3.4105 -3.6229 10 7 4.9186 2.8209 -4.6371 11 14 3.3603 4.9875 -3.8934 12 1 4.2628 6.1546 -3.7234 13 1 2.7966 4.9937 -5.2672 14 1 2.2554 5.0680 -2.9045 15 6 5.5040 2.8660 0.3096 16 6 5.9245 4.2854 0.5914 17 6 6.6557 4.9890 -0.3464 18 6 7.0463 6.2894 -0.0863 19 6 6.7025 6.8908 1.1105 20 6 5.9672 6.1934 2.0490 21 6 5.5924 6.8497 3.3529 22 6 5.5739 4.8882 1.7904 23 8 4.8504 4.2000 2.7123 24 6 5.5742 3.3403 3.5949 25 6 4.7450 2.0863 3.8791 26 6 5.8535 4.0752 4.9074 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9564 -0.8901 34 1 3.9330 0.9578 -0.9069 35 1 3.9336 0.9002 0.8722 36 1 2.6540 3.5284 -1.3507 37 1 4.0776 4.5726 -1.1244 38 1 4.8561 3.2047 -5.5258 39 1 6.0436 2.4931 -0.5609 40 1 5.7316 2.2413 1.1733 41 1 6.9254 4.5215 -1.2818 42 1 7.6212 6.8363 -0.8189 43 1 7.0092 7.9067 1.3116 44 1 6.3906 6.6969 4.0792 45 1 5.4462 7.9180 3.1931 46 1 4.6693 6.4089 3.7294 47 1 6.5180 3.0543 3.1307 48 1 3.8012 2.3723 4.3433 49 1 4.5460 1.5627 2.9440 50 1 5.2972 1.4303 4.5520 51 1 4.9186 4.4608 5.3140 52 1 6.3032 3.3854 5.6216 53 1 6.5378 4.9031 4.7218 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232390624.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:26 Heat of formation + Delta-G solvation = -48.587400 kcal Electronic energy + Delta-G solvation = -29010.214434 eV Core-core repulsion = 25459.709422 eV Total energy + Delta-G solvation = -3550.505012 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.28850 -38.94008 -38.33926 -35.69406 -34.60110 -33.91219 -33.58231 -31.41395 -30.21566 -28.88715 -28.13837 -27.42872 -26.09746 -24.73610 -23.28786 -22.44223 -21.86435 -21.46026 -21.00340 -19.02262 -18.65414 -17.19261 -16.68504 -16.59020 -16.43074 -16.20439 -15.97569 -15.53619 -15.15478 -14.84381 -14.56405 -14.47134 -14.16079 -14.01551 -13.90671 -13.82324 -13.60103 -13.47507 -13.22668 -13.18462 -13.00072 -12.91600 -12.80595 -12.52889 -12.36780 -12.31043 -12.18081 -12.07605 -12.00156 -11.92444 -11.77396 -11.60059 -11.59079 -11.40144 -11.26912 -10.77117 -10.59963 -9.51948 -9.29819 -8.87265 -8.31626 -6.32803 0.36878 0.44743 1.28500 1.30329 1.41758 2.30703 2.56742 3.00019 3.04305 3.41478 3.89204 3.99928 4.04836 4.10286 4.14469 4.19464 4.22355 4.30955 4.34284 4.43351 4.48917 4.52571 4.57260 4.70134 4.75174 4.78122 4.80416 4.83710 4.86286 4.90303 4.97049 4.99215 5.01071 5.05202 5.06297 5.09827 5.15298 5.18421 5.20803 5.32140 5.34123 5.38774 5.42171 5.45337 5.54796 5.56695 5.60299 5.63170 5.76579 5.98276 6.13128 6.38398 6.48157 6.72150 6.85115 7.32919 8.84344 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.009056 B = 0.006064 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3091.074743 B = 4616.594027 C = 6884.519929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C -0.102 4.102 4 C 0.065 3.935 5 N -0.511 5.511 6 C 0.170 3.830 7 C -0.530 4.530 8 H 0.038 0.962 9 C 0.022 3.978 10 N -0.943 5.943 11 Si 0.929 3.071 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.256 1.256 15 C 0.112 3.888 16 C -0.102 4.102 17 C -0.118 4.118 18 C -0.133 4.133 19 C -0.111 4.111 20 C -0.118 4.118 21 C -0.101 4.101 22 C 0.110 3.890 23 O -0.325 6.325 24 C 0.082 3.918 25 C -0.146 4.146 26 C -0.167 4.167 27 H 0.061 0.939 28 H 0.042 0.958 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.037 0.963 34 H 0.012 0.988 35 H 0.073 0.927 36 H 0.021 0.979 37 H 0.015 0.985 38 H 0.264 0.736 39 H 0.019 0.981 40 H 0.076 0.924 41 H 0.100 0.900 42 H 0.136 0.864 43 H 0.154 0.846 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.065 0.935 47 H 0.048 0.952 48 H 0.064 0.936 49 H 0.048 0.952 50 H 0.089 0.911 51 H 0.066 0.934 52 H 0.083 0.917 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.564 3.484 19.852 20.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C -0.140 4.140 4 C -0.063 4.063 5 N -0.233 5.233 6 C 0.042 3.958 7 C -0.569 4.569 8 H 0.056 0.944 9 C -0.176 4.176 10 N -0.584 5.584 11 Si 0.754 3.246 12 H -0.194 1.194 13 H -0.208 1.208 14 H -0.180 1.180 15 C -0.015 4.015 16 C -0.103 4.103 17 C -0.137 4.137 18 C -0.151 4.151 19 C -0.129 4.129 20 C -0.118 4.118 21 C -0.158 4.158 22 C 0.066 3.934 23 O -0.242 6.242 24 C 0.026 3.974 25 C -0.203 4.203 26 C -0.224 4.224 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.030 0.970 35 H 0.092 0.908 36 H 0.039 0.961 37 H 0.034 0.966 38 H 0.073 0.927 39 H 0.037 0.963 40 H 0.094 0.906 41 H 0.118 0.882 42 H 0.154 0.846 43 H 0.171 0.829 44 H 0.101 0.899 45 H 0.097 0.903 46 H 0.084 0.916 47 H 0.066 0.934 48 H 0.083 0.917 49 H 0.067 0.933 50 H 0.108 0.892 51 H 0.085 0.915 52 H 0.101 0.899 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.144 3.715 20.112 20.453 hybrid contribution 0.504 -0.101 -2.161 2.222 sum 0.647 3.615 17.951 18.323 Atomic orbital electron populations 1.21720 0.94784 1.02096 1.01687 1.21441 0.96721 0.95608 1.01720 1.21447 0.94125 0.97270 1.01131 1.21986 0.96097 0.89246 0.98999 1.62497 1.12383 1.14327 1.34117 1.19885 0.95396 0.93893 0.86626 1.21749 1.32130 1.09802 0.93206 0.94371 1.25649 0.96034 1.00089 0.95840 1.70052 1.45862 1.41864 1.00620 0.85967 0.80241 0.80732 0.77669 1.19364 1.20807 1.17991 1.20665 0.89441 0.92813 0.98620 1.20202 0.98294 0.96932 0.94883 1.21073 0.98753 0.95742 0.98084 1.21316 1.01138 0.94369 0.98319 1.21189 0.98174 1.00710 0.92786 1.20464 0.98489 0.94013 0.98852 1.20756 1.02080 1.00355 0.92565 1.18356 0.94804 0.91334 0.88919 1.86065 1.33513 1.59193 1.45462 1.22447 0.94480 0.90554 0.89874 1.21907 1.00834 0.95523 1.02042 1.22353 1.02561 1.01271 0.96211 0.91983 0.93845 0.91468 0.93525 0.90757 0.91377 0.94426 0.96976 0.90845 0.96085 0.96641 0.92696 0.96316 0.90553 0.88173 0.84596 0.82857 0.89887 0.90322 0.91604 0.93393 0.91663 0.93283 0.89229 0.91464 0.89853 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.91 71.98 0.71 -2.82 16 2 C -0.12 -3.34 5.93 30.59 0.18 -3.16 16 3 C -0.10 -3.58 5.12 30.60 0.16 -3.42 16 4 C 0.06 2.54 4.77 86.30 0.41 2.95 16 5 N -0.51 -21.88 4.69 -905.36 -4.25 -26.12 16 6 C 0.17 8.47 3.80 85.56 0.33 8.80 16 7 C -0.53 -30.29 7.96 25.60 0.20 -30.09 16 8 H 0.04 2.42 6.15 -2.91 -0.02 2.40 16 9 C 0.02 1.30 5.47 84.65 0.46 1.76 16 10 N -0.94 -58.99 13.96 21.45 0.30 -58.69 16 11 Si 0.93 45.81 27.39 68.60 1.88 47.69 16 12 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 13 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 14 H -0.26 -12.17 6.67 99.48 0.66 -11.51 16 15 C 0.11 4.59 4.48 85.56 0.38 4.97 16 16 C -0.10 -3.93 4.37 -19.77 -0.09 -4.02 16 17 C -0.12 -4.57 9.23 22.25 0.21 -4.37 16 18 C -0.13 -4.22 10.04 22.28 0.22 -3.99 16 19 C -0.11 -2.97 9.71 22.25 0.22 -2.76 16 20 C -0.12 -3.32 5.89 -19.76 -0.12 -3.44 16 21 C -0.10 -2.09 8.62 71.24 0.61 -1.47 16 22 C 0.11 3.69 5.50 22.51 0.12 3.81 16 23 O -0.32 -10.13 8.17 -92.41 -0.76 -10.88 16 24 C 0.08 1.95 2.56 30.59 0.08 2.03 16 25 C -0.15 -3.10 9.54 71.98 0.69 -2.41 16 26 C -0.17 -2.95 8.84 71.98 0.64 -2.31 16 27 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.04 1.52 6.63 -2.38 -0.02 1.51 16 34 H 0.01 0.55 6.31 -2.39 -0.02 0.54 16 35 H 0.07 2.50 7.38 -2.39 -0.02 2.48 16 36 H 0.02 1.08 5.82 -2.39 -0.01 1.07 16 37 H 0.02 0.81 6.07 -2.39 -0.01 0.79 16 38 H 0.26 15.55 8.31 -92.70 -0.77 14.78 16 39 H 0.02 0.89 6.31 -2.39 -0.02 0.87 16 40 H 0.08 2.77 6.05 -2.39 -0.01 2.75 16 41 H 0.10 4.39 7.99 -2.91 -0.02 4.37 16 42 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 43 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 44 H 0.08 1.40 6.68 -2.39 -0.02 1.38 16 45 H 0.08 1.35 8.10 -2.39 -0.02 1.33 16 46 H 0.06 1.47 7.38 -2.39 -0.02 1.45 16 47 H 0.05 1.23 7.52 -2.38 -0.02 1.21 16 48 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 49 H 0.05 1.22 7.00 -2.39 -0.02 1.21 16 50 H 0.09 1.41 8.14 -2.39 -0.02 1.40 16 51 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 52 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 53 H 0.06 1.05 6.03 -2.39 -0.01 1.04 16 Total: -1.00 -67.79 404.10 3.41 -64.38 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.82 Total: 23.56 kcal Atomic # 6 Polarization: -45.35 SS G_CDS: 5.42 Total: -39.93 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -3.95 Total: -84.82 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -0.76 Total: -10.88 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.88 Total: 47.69 kcal Total: -67.79 3.41 -64.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232390624.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.789 kcal (2) G-P(sol) polarization free energy of solvation -67.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds