Wall clock time and date at job start Tue Mar 31 2020 13:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34131 * 125.98989 * 2 1 4 4 C 1.30497 * 109.25490 * 180.25033 * 3 2 1 5 5 N 1.35042 * 108.70236 * 359.75415 * 4 3 2 6 6 C 1.46503 * 126.39675 * 180.02562 * 5 4 3 7 7 C 1.34663 * 125.99041 * 179.82504 * 2 1 3 8 8 C 1.50697 * 126.59320 * 0.02562 * 7 2 1 9 9 N 1.46903 * 109.47629 * 254.51310 * 8 7 2 10 10 C 1.46898 * 110.99675 * 76.22635 * 9 8 7 11 11 C 1.50696 * 109.47726 * 281.85928 * 10 9 8 12 12 H 1.08003 * 119.99195 * 354.70663 * 11 10 9 13 13 C 1.37877 * 120.00316 * 174.70271 * 11 10 9 14 14 N 1.31510 * 120.00163 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99818 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47224 * 60.00322 * 15 13 11 17 17 H 1.48499 * 109.46806 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47270 * 299.99913 * 15 13 11 19 19 C 1.46896 * 111.00304 * 200.18090 * 9 8 7 20 20 C 1.53017 * 109.47375 * 289.31203 * 19 9 8 21 21 C 1.52987 * 109.46004 * 164.04571 * 20 19 9 22 22 C 1.52984 * 109.51191 * 315.98378 * 21 20 19 23 23 C 1.53007 * 109.47023 * 112.93473 * 22 21 20 24 24 C 1.53003 * 109.43603 * 284.05036 * 23 22 21 25 25 C 1.52979 * 109.48912 * 75.95565 * 24 23 22 26 26 C 1.52997 * 109.50658 * 247.06987 * 25 24 23 27 27 H 1.09001 * 109.46991 * 266.83371 * 1 2 3 28 28 H 1.09000 * 109.46761 * 26.83632 * 1 2 3 29 29 H 1.08995 * 109.46787 * 146.83446 * 1 2 3 30 30 H 1.08003 * 125.64707 * 179.73507 * 4 3 2 31 31 H 1.09005 * 109.46785 * 274.68551 * 6 5 4 32 32 H 1.08996 * 109.47056 * 34.68656 * 6 5 4 33 33 H 1.09000 * 109.46610 * 154.68846 * 6 5 4 34 34 H 1.09005 * 109.47063 * 14.51633 * 8 7 2 35 35 H 1.09008 * 109.47057 * 134.51095 * 8 7 2 36 36 H 1.09006 * 109.47068 * 41.86127 * 10 9 8 37 37 H 1.09000 * 109.47292 * 161.85620 * 10 9 8 38 38 H 0.96999 * 120.00275 * 180.02562 * 14 13 11 39 39 H 1.09007 * 109.46732 * 49.30820 * 19 9 8 40 40 H 1.09002 * 109.46940 * 284.04304 * 20 19 9 41 41 H 1.09002 * 109.46868 * 44.05032 * 20 19 9 42 42 H 1.09001 * 109.46422 * 195.97999 * 21 20 19 43 43 H 1.08991 * 109.45917 * 75.99480 * 21 20 19 44 44 H 1.09003 * 109.47359 * 352.94429 * 22 21 20 45 45 H 1.09001 * 109.47813 * 232.93582 * 22 21 20 46 46 H 1.08996 * 109.48002 * 164.05722 * 23 22 21 47 47 H 1.09001 * 109.48180 * 44.03769 * 23 22 21 48 48 H 1.09008 * 109.46440 * 315.95011 * 24 23 22 49 49 H 1.09002 * 109.46835 * 195.96280 * 24 23 22 50 50 H 1.08995 * 109.46705 * 127.05336 * 25 24 23 51 51 H 1.09004 * 109.46296 * 7.07985 * 25 24 23 52 52 H 1.09002 * 109.47443 * 284.00997 * 26 25 24 53 53 H 1.09005 * 109.47558 * 164.01012 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2953 1.0853 0.0000 4 6 3.5449 0.7095 -0.0054 5 7 3.5913 -0.6401 -0.0035 6 6 4.7997 -1.4684 -0.0075 7 6 2.2984 -1.0896 0.0033 8 6 1.8473 -2.5275 0.0072 9 7 2.0531 -3.1018 1.3435 10 6 1.0218 -2.6370 2.2807 11 6 1.3465 -1.2361 2.7310 12 1 2.2732 -0.7723 2.4265 13 6 0.4608 -0.5464 3.5316 14 7 -0.6673 -1.1114 3.9027 15 14 0.8633 1.1904 4.0891 16 1 1.0293 2.0657 2.9011 17 1 -0.2425 1.7074 4.9348 18 1 2.1231 1.1786 4.8753 19 6 2.0895 -4.5691 1.2861 20 6 0.6876 -5.1028 0.9840 21 6 0.7836 -6.5618 0.5341 22 6 1.9374 -6.7156 -0.4586 23 6 3.0399 -7.5708 0.1694 24 6 3.8154 -6.7337 1.1885 25 6 2.9838 -6.5829 2.4637 26 6 2.5663 -5.1206 2.6313 27 1 -0.3633 -0.0568 1.0261 28 1 -0.3633 0.9170 -0.4639 29 1 -0.3633 -0.8602 -0.5622 30 1 4.4004 1.3688 -0.0108 31 1 5.1424 -1.6061 -1.0331 32 1 5.5796 -0.9759 0.5732 33 1 4.5760 -2.4394 0.4344 34 1 0.7894 -2.5771 -0.2507 35 1 2.4263 -3.0918 -0.7239 36 1 0.0509 -2.6434 1.7850 37 1 0.9922 -3.2991 3.1460 38 1 -1.2906 -0.6261 4.4656 39 1 2.7756 -4.8850 0.5002 40 1 0.0733 -5.0391 1.8822 41 1 0.2351 -4.5071 0.1912 42 1 -0.1498 -6.8562 0.0544 43 1 0.9629 -7.1980 1.4008 44 1 2.3372 -5.7322 -0.7062 45 1 1.5746 -7.1993 -1.3655 46 1 3.7195 -7.9167 -0.6094 47 1 2.5930 -8.4300 0.6696 48 1 4.0195 -5.7484 0.7692 49 1 4.7567 -7.2298 1.4252 50 1 3.5781 -6.8919 3.3235 51 1 2.0942 -7.2089 2.3933 52 1 3.4178 -4.5374 2.9819 53 1 1.7568 -5.0548 3.3584 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235542029.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:11 Heat of formation + Delta-G solvation = 65.784057 kcal Electronic energy + Delta-G solvation = -30000.745048 eV Core-core repulsion = 26487.492306 eV Total energy + Delta-G solvation = -3513.252742 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.232 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.34577 -39.60674 -36.11523 -33.62237 -32.64803 -32.53447 -31.83553 -30.08536 -27.99992 -27.14344 -26.02124 -25.63805 -24.73017 -23.52707 -22.31527 -20.98753 -20.54456 -19.84174 -18.80762 -18.25959 -16.61121 -16.07513 -15.70740 -15.00441 -14.92091 -14.44015 -14.20108 -13.99679 -13.97633 -13.82493 -13.58825 -13.09196 -12.93208 -12.74046 -12.62750 -12.22145 -11.95787 -11.88690 -11.75860 -11.60610 -11.55261 -11.27587 -11.21395 -11.03422 -10.91546 -10.84306 -10.70560 -10.61880 -10.48865 -10.28047 -10.24218 -9.83773 -9.51517 -9.40822 -9.13298 -9.03975 -8.67371 -8.22340 -7.26787 -7.18778 -5.86889 -3.82874 2.82018 3.47397 3.49756 3.53406 3.63342 3.99379 4.59068 4.72137 4.86793 4.95422 5.06415 5.21589 5.23939 5.30563 5.33715 5.42161 5.43006 5.45659 5.46236 5.50446 5.55628 5.60147 5.76161 5.80006 5.85474 5.96507 6.00797 6.03687 6.04592 6.11978 6.15713 6.21184 6.22919 6.27805 6.29893 6.36566 6.53433 6.58156 6.60537 6.63062 6.80296 6.84707 6.87470 7.11587 7.19319 7.28589 7.42862 7.70072 7.95287 8.02181 8.16154 8.25526 8.65792 8.94219 9.22752 9.79525 11.23086 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.013204 B = 0.005322 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.078152 B = 5260.370061 C = 6175.587515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.033 3.967 3 N -0.494 5.494 4 C 0.155 3.845 5 N -0.452 5.452 6 C 0.081 3.919 7 C 0.022 3.978 8 C 0.141 3.859 9 N -0.531 5.531 10 C 0.196 3.804 11 C -0.478 4.478 12 H 0.060 0.940 13 C 0.061 3.939 14 N -0.905 5.905 15 Si 0.875 3.125 16 H -0.264 1.264 17 H -0.292 1.292 18 H -0.284 1.284 19 C 0.072 3.928 20 C -0.148 4.148 21 C -0.123 4.123 22 C -0.127 4.127 23 C -0.117 4.117 24 C -0.127 4.127 25 C -0.125 4.125 26 C -0.106 4.106 27 H 0.089 0.911 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.191 0.809 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.053 0.947 36 H -0.001 1.001 37 H 0.026 0.974 38 H 0.257 0.743 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.051 0.949 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.060 0.940 48 H 0.074 0.926 49 H 0.052 0.948 50 H 0.054 0.946 51 H 0.068 0.932 52 H 0.067 0.933 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.498 -10.852 -9.221 16.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.097 4.097 3 N -0.213 5.213 4 C -0.126 4.126 5 N -0.136 5.136 6 C -0.063 4.063 7 C -0.092 4.092 8 C 0.012 3.988 9 N -0.254 5.254 10 C 0.071 3.929 11 C -0.517 4.517 12 H 0.078 0.922 13 C -0.139 4.139 14 N -0.546 5.546 15 Si 0.703 3.297 16 H -0.189 1.189 17 H -0.218 1.218 18 H -0.210 1.210 19 C -0.036 4.036 20 C -0.187 4.187 21 C -0.161 4.161 22 C -0.164 4.164 23 C -0.155 4.155 24 C -0.164 4.164 25 C -0.162 4.162 26 C -0.144 4.144 27 H 0.108 0.892 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.207 0.793 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.017 0.983 37 H 0.043 0.957 38 H 0.067 0.933 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.079 0.921 48 H 0.092 0.908 49 H 0.071 0.929 50 H 0.072 0.928 51 H 0.087 0.913 52 H 0.086 0.914 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.651 -9.907 -8.937 15.902 hybrid contribution -0.222 0.017 0.362 0.425 sum 8.429 -9.890 -8.575 15.569 Atomic orbital electron populations 1.20051 0.88603 0.99831 1.03718 1.20088 0.95770 0.87628 1.06174 1.70052 1.00411 1.31030 1.19850 1.24459 0.96974 0.81878 1.09291 1.44921 1.06295 1.07126 1.55236 1.21853 0.85750 0.96980 1.01692 1.20501 0.82769 0.96281 1.09657 1.20209 0.98548 0.88462 0.91592 1.62448 1.51770 1.04338 1.06883 1.19792 0.87266 0.95838 0.89989 1.21060 1.04109 0.98189 1.28359 0.92151 1.24785 0.95097 0.97419 0.96582 1.69937 1.09824 1.37379 1.37418 0.86886 0.77300 0.86387 0.79151 1.18865 1.21849 1.20993 1.22253 0.95051 0.88498 0.97834 1.22311 0.99478 0.95347 1.01599 1.21809 0.97537 0.97729 0.98991 1.21813 0.96138 1.00427 0.98027 1.21698 0.97437 0.98107 0.98210 1.21817 0.98000 1.00613 0.95996 1.21849 0.99665 0.97798 0.96934 1.21591 1.01595 0.94078 0.97092 0.89225 0.93225 0.92990 0.79265 0.92040 0.90625 0.88988 0.93049 0.92851 0.98334 0.95651 0.93303 0.89520 0.91418 0.92515 0.93000 0.91128 0.91057 0.92874 0.92774 0.92149 0.90757 0.92882 0.92755 0.91343 0.91427 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.36 9.94 36.01 0.36 -1.01 16 2 C 0.03 0.71 5.65 -82.85 -0.47 0.24 16 3 N -0.49 -10.87 11.25 -10.87 -0.12 -10.99 16 4 C 0.15 2.83 12.56 -90.38 -1.14 1.69 16 5 N -0.45 -7.84 3.15 -121.36 -0.38 -8.22 16 6 C 0.08 1.02 11.05 59.85 0.66 1.68 16 7 C 0.02 0.44 4.38 -81.60 -0.36 0.08 16 8 C 0.14 2.53 4.27 -4.98 -0.02 2.51 16 9 N -0.53 -10.03 4.36 -229.50 -1.00 -11.03 16 10 C 0.20 4.65 3.46 -4.98 -0.02 4.63 16 11 C -0.48 -12.77 6.26 -34.44 -0.22 -12.99 16 12 H 0.06 1.70 6.40 -52.48 -0.34 1.36 16 13 C 0.06 1.71 4.69 -17.82 -0.08 1.63 16 14 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 15 Si 0.87 22.78 29.54 -169.99 -5.02 17.76 16 16 H -0.26 -7.07 7.11 56.52 0.40 -6.67 16 17 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 18 H -0.28 -7.42 7.11 56.52 0.40 -7.02 16 19 C 0.07 1.10 1.57 -67.71 -0.11 1.00 16 20 C -0.15 -2.25 4.10 -26.73 -0.11 -2.36 16 21 C -0.12 -1.49 5.48 -26.75 -0.15 -1.63 16 22 C -0.13 -1.35 5.47 -26.74 -0.15 -1.50 16 23 C -0.12 -1.14 5.59 -26.73 -0.15 -1.28 16 24 C -0.13 -1.34 5.47 -26.74 -0.15 -1.49 16 25 C -0.12 -1.50 5.48 -26.74 -0.15 -1.64 16 26 C -0.11 -1.62 4.60 -26.73 -0.12 -1.74 16 27 H 0.09 2.21 6.64 -51.93 -0.34 1.86 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.98 7.16 -51.93 -0.37 0.61 16 30 H 0.19 2.67 8.06 -52.48 -0.42 2.24 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.09 1.22 7.77 -51.93 -0.40 0.82 16 34 H 0.05 0.97 5.60 -51.93 -0.29 0.68 16 35 H 0.05 0.82 7.72 -51.92 -0.40 0.42 16 36 H 0.00 -0.03 7.38 -51.93 -0.38 -0.41 16 37 H 0.03 0.66 6.12 -51.93 -0.32 0.34 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.09 1.20 2.50 -51.92 -0.13 1.07 16 40 H 0.07 1.18 7.31 -51.93 -0.38 0.80 16 41 H 0.06 0.91 6.67 -51.93 -0.35 0.56 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.84 4.69 -51.93 -0.24 0.59 16 44 H 0.07 0.82 5.47 -51.93 -0.28 0.54 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.57 7.47 -51.93 -0.39 0.18 16 48 H 0.07 0.85 5.47 -51.92 -0.28 0.56 16 49 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.07 0.80 4.69 -51.93 -0.24 0.56 16 52 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 53 H 0.06 1.12 6.64 -51.93 -0.34 0.77 16 LS Contribution 378.27 15.07 5.70 5.70 Total: -1.00 -31.14 378.27 -11.30 -42.43 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -8.85 Total: 2.16 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -2.35 Total: -12.18 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: -0.77 Total: -55.87 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.14 -11.30 -42.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235542029.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.218 kcal (2) G-P(sol) polarization free energy of solvation -31.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds