Wall clock time and date at job start Tue Mar 31 2020 13:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34131 * 125.98989 * 2 1 4 4 C 1.30497 * 109.25490 * 180.25033 * 3 2 1 5 5 N 1.35042 * 108.70236 * 359.75415 * 4 3 2 6 6 C 1.46503 * 126.39675 * 180.02562 * 5 4 3 7 7 C 1.34663 * 125.99041 * 179.82504 * 2 1 3 8 8 C 1.50697 * 126.59320 * 0.02562 * 7 2 1 9 9 N 1.46903 * 109.47629 * 254.51310 * 8 7 2 10 10 C 1.46898 * 110.99675 * 76.22635 * 9 8 7 11 11 C 1.50696 * 109.47726 * 281.85928 * 10 9 8 12 12 H 1.08003 * 119.99195 * 354.70663 * 11 10 9 13 13 C 1.37877 * 120.00316 * 174.70271 * 11 10 9 14 14 N 1.31510 * 120.00163 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99818 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47224 * 60.00322 * 15 13 11 17 17 H 1.48499 * 109.46806 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47270 * 299.99913 * 15 13 11 19 19 C 1.46896 * 111.00304 * 200.18090 * 9 8 7 20 20 C 1.53017 * 109.47375 * 289.31203 * 19 9 8 21 21 C 1.52987 * 109.46004 * 164.04571 * 20 19 9 22 22 C 1.52984 * 109.51191 * 315.98378 * 21 20 19 23 23 C 1.53007 * 109.47023 * 112.93473 * 22 21 20 24 24 C 1.53003 * 109.43603 * 284.05036 * 23 22 21 25 25 C 1.52979 * 109.48912 * 75.95565 * 24 23 22 26 26 C 1.52997 * 109.50658 * 247.06987 * 25 24 23 27 27 H 1.09001 * 109.46991 * 266.83371 * 1 2 3 28 28 H 1.09000 * 109.46761 * 26.83632 * 1 2 3 29 29 H 1.08995 * 109.46787 * 146.83446 * 1 2 3 30 30 H 1.08003 * 125.64707 * 179.73507 * 4 3 2 31 31 H 1.09005 * 109.46785 * 274.68551 * 6 5 4 32 32 H 1.08996 * 109.47056 * 34.68656 * 6 5 4 33 33 H 1.09000 * 109.46610 * 154.68846 * 6 5 4 34 34 H 1.09005 * 109.47063 * 14.51633 * 8 7 2 35 35 H 1.09008 * 109.47057 * 134.51095 * 8 7 2 36 36 H 1.09006 * 109.47068 * 41.86127 * 10 9 8 37 37 H 1.09000 * 109.47292 * 161.85620 * 10 9 8 38 38 H 0.96999 * 120.00275 * 180.02562 * 14 13 11 39 39 H 1.09007 * 109.46732 * 49.30820 * 19 9 8 40 40 H 1.09002 * 109.46940 * 284.04304 * 20 19 9 41 41 H 1.09002 * 109.46868 * 44.05032 * 20 19 9 42 42 H 1.09001 * 109.46422 * 195.97999 * 21 20 19 43 43 H 1.08991 * 109.45917 * 75.99480 * 21 20 19 44 44 H 1.09003 * 109.47359 * 352.94429 * 22 21 20 45 45 H 1.09001 * 109.47813 * 232.93582 * 22 21 20 46 46 H 1.08996 * 109.48002 * 164.05722 * 23 22 21 47 47 H 1.09001 * 109.48180 * 44.03769 * 23 22 21 48 48 H 1.09008 * 109.46440 * 315.95011 * 24 23 22 49 49 H 1.09002 * 109.46835 * 195.96280 * 24 23 22 50 50 H 1.08995 * 109.46705 * 127.05336 * 25 24 23 51 51 H 1.09004 * 109.46296 * 7.07985 * 25 24 23 52 52 H 1.09002 * 109.47443 * 284.00997 * 26 25 24 53 53 H 1.09005 * 109.47558 * 164.01012 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2953 1.0853 0.0000 4 6 3.5449 0.7095 -0.0054 5 7 3.5913 -0.6401 -0.0035 6 6 4.7997 -1.4684 -0.0075 7 6 2.2984 -1.0896 0.0033 8 6 1.8473 -2.5275 0.0072 9 7 2.0531 -3.1018 1.3435 10 6 1.0218 -2.6370 2.2807 11 6 1.3465 -1.2361 2.7310 12 1 2.2732 -0.7723 2.4265 13 6 0.4608 -0.5464 3.5316 14 7 -0.6673 -1.1114 3.9027 15 14 0.8633 1.1904 4.0891 16 1 1.0293 2.0657 2.9011 17 1 -0.2425 1.7074 4.9348 18 1 2.1231 1.1786 4.8753 19 6 2.0895 -4.5691 1.2861 20 6 0.6876 -5.1028 0.9840 21 6 0.7836 -6.5618 0.5341 22 6 1.9374 -6.7156 -0.4586 23 6 3.0399 -7.5708 0.1694 24 6 3.8154 -6.7337 1.1885 25 6 2.9838 -6.5829 2.4637 26 6 2.5663 -5.1206 2.6313 27 1 -0.3633 -0.0568 1.0261 28 1 -0.3633 0.9170 -0.4639 29 1 -0.3633 -0.8602 -0.5622 30 1 4.4004 1.3688 -0.0108 31 1 5.1424 -1.6061 -1.0331 32 1 5.5796 -0.9759 0.5732 33 1 4.5760 -2.4394 0.4344 34 1 0.7894 -2.5771 -0.2507 35 1 2.4263 -3.0918 -0.7239 36 1 0.0509 -2.6434 1.7850 37 1 0.9922 -3.2991 3.1460 38 1 -1.2906 -0.6261 4.4656 39 1 2.7756 -4.8850 0.5002 40 1 0.0733 -5.0391 1.8822 41 1 0.2351 -4.5071 0.1912 42 1 -0.1498 -6.8562 0.0544 43 1 0.9629 -7.1980 1.4008 44 1 2.3372 -5.7322 -0.7062 45 1 1.5746 -7.1993 -1.3655 46 1 3.7195 -7.9167 -0.6094 47 1 2.5930 -8.4300 0.6696 48 1 4.0195 -5.7484 0.7692 49 1 4.7567 -7.2298 1.4252 50 1 3.5781 -6.8919 3.3235 51 1 2.0942 -7.2089 2.3933 52 1 3.4178 -4.5374 2.9819 53 1 1.7568 -5.0548 3.3584 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235542029.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:10 Heat of formation + Delta-G solvation = 48.803010 kcal Electronic energy + Delta-G solvation = -30001.481402 eV Core-core repulsion = 26487.492306 eV Total energy + Delta-G solvation = -3513.989096 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.232 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.80224 -40.80070 -37.48107 -35.04039 -34.51111 -33.68537 -33.18780 -31.54196 -29.67387 -28.77357 -27.21765 -26.73564 -26.11393 -25.29437 -23.70608 -22.16548 -21.60406 -21.27451 -20.22973 -19.56952 -18.53899 -17.44321 -17.06154 -16.61008 -16.25990 -16.08029 -15.78213 -15.15877 -15.02761 -14.97757 -14.89498 -14.53438 -14.19962 -14.08270 -13.91341 -13.81364 -13.51672 -13.28589 -13.11987 -13.07919 -12.99615 -12.87291 -12.72516 -12.53492 -12.39719 -12.35221 -12.07323 -11.96659 -11.80497 -11.67615 -11.57447 -11.29728 -11.06622 -10.67473 -10.60208 -10.49896 -10.44337 -10.07055 -8.90270 -8.74277 -8.07001 -6.05497 1.31652 1.36465 1.38345 1.48501 2.25622 2.42609 2.46946 3.28399 3.41870 3.76155 3.92513 3.98600 4.06733 4.10635 4.17729 4.27465 4.29406 4.35188 4.38131 4.40501 4.45389 4.52104 4.56176 4.59956 4.63938 4.71179 4.83542 4.87081 4.92691 4.94520 5.03796 5.09404 5.12455 5.16353 5.23832 5.27638 5.30226 5.34188 5.37548 5.39537 5.43315 5.45094 5.53737 5.57748 5.68864 5.70924 5.74212 5.84941 6.13497 6.25340 6.45774 6.65870 6.79185 7.05744 7.44944 7.59236 9.02626 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.013204 B = 0.005322 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.078152 B = 5260.370061 C = 6175.587515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.004 4.004 3 N -0.540 5.540 4 C 0.162 3.838 5 N -0.449 5.449 6 C 0.074 3.926 7 C 0.017 3.983 8 C 0.146 3.854 9 N -0.531 5.531 10 C 0.221 3.779 11 C -0.462 4.462 12 H 0.050 0.950 13 C 0.021 3.979 14 N -0.933 5.933 15 Si 0.920 3.080 16 H -0.277 1.277 17 H -0.290 1.290 18 H -0.280 1.280 19 C 0.075 3.925 20 C -0.142 4.142 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.113 4.113 24 C -0.124 4.124 25 C -0.118 4.118 26 C -0.101 4.101 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.231 0.769 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.037 0.963 35 H 0.088 0.912 36 H -0.031 1.031 37 H 0.001 0.999 38 H 0.255 0.745 39 H 0.117 0.883 40 H 0.032 0.968 41 H 0.045 0.955 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.066 0.934 48 H 0.068 0.932 49 H 0.069 0.931 50 H 0.061 0.939 51 H 0.072 0.928 52 H 0.053 0.947 53 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.534 -12.655 -10.952 20.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.132 4.132 3 N -0.260 5.260 4 C -0.120 4.120 5 N -0.132 5.132 6 C -0.067 4.067 7 C -0.099 4.099 8 C 0.017 3.983 9 N -0.254 5.254 10 C 0.095 3.905 11 C -0.502 4.502 12 H 0.068 0.932 13 C -0.176 4.176 14 N -0.576 5.576 15 Si 0.748 3.252 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.206 1.206 19 C -0.032 4.032 20 C -0.182 4.182 21 C -0.155 4.155 22 C -0.161 4.161 23 C -0.151 4.151 24 C -0.161 4.161 25 C -0.156 4.156 26 C -0.140 4.140 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.247 0.753 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.104 0.896 34 H 0.055 0.945 35 H 0.107 0.893 36 H -0.013 1.013 37 H 0.019 0.981 38 H 0.064 0.936 39 H 0.134 0.866 40 H 0.051 0.949 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.093 0.907 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.085 0.915 48 H 0.086 0.914 49 H 0.088 0.912 50 H 0.080 0.920 51 H 0.090 0.910 52 H 0.072 0.928 53 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 11.721 -11.736 -10.669 19.721 hybrid contribution -1.103 0.576 0.868 1.517 sum 10.618 -11.160 -9.801 18.258 Atomic orbital electron populations 1.19887 0.89476 1.00719 1.01269 1.20211 0.95865 0.88789 1.08384 1.69981 1.02184 1.31949 1.21906 1.25218 0.96993 0.82783 1.06958 1.45177 1.06784 1.07364 1.53884 1.22187 0.84187 0.96082 1.04235 1.20629 0.83794 0.96333 1.09140 1.20209 0.98381 0.88288 0.91454 1.62312 1.49351 1.06809 1.06884 1.19283 0.87205 0.94029 0.89936 1.21192 1.03006 0.99099 1.26857 0.93180 1.25278 0.95299 0.99652 0.97327 1.70020 1.10654 1.38330 1.38600 0.86179 0.77164 0.83677 0.78161 1.20226 1.21549 1.20625 1.22403 0.95831 0.86064 0.98901 1.22203 0.98476 0.97814 0.99680 1.21779 0.98947 0.94990 0.99771 1.21790 0.95681 1.00536 0.98085 1.21685 0.97201 0.97795 0.98380 1.21787 0.98504 1.00687 0.95089 1.21806 1.00308 0.94900 0.98551 1.21525 0.99750 0.96598 0.96079 0.93313 0.92712 0.91677 0.75309 0.88730 0.88542 0.89605 0.94466 0.89340 1.01305 0.98098 0.93562 0.86569 0.94886 0.93652 0.92451 0.90689 0.91672 0.91334 0.90886 0.91516 0.91393 0.91206 0.91986 0.90975 0.92847 0.95094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.47 9.94 71.24 0.71 -1.76 16 2 C 0.00 -0.17 5.65 41.39 0.23 0.06 16 3 N -0.54 -23.65 11.25 -188.31 -2.12 -25.76 16 4 C 0.16 5.60 12.56 180.26 2.26 7.87 16 5 N -0.45 -14.57 3.15 -537.89 -1.70 -16.27 16 6 C 0.07 1.59 11.05 127.77 1.41 3.00 16 7 C 0.02 0.65 4.38 40.95 0.18 0.83 16 8 C 0.15 5.12 4.27 85.56 0.37 5.49 16 9 N -0.53 -20.12 4.36 -880.01 -3.84 -23.96 16 10 C 0.22 10.99 3.46 85.56 0.30 11.28 16 11 C -0.46 -25.46 6.26 25.60 0.16 -25.30 16 12 H 0.05 2.85 6.40 -2.91 -0.02 2.83 16 13 C 0.02 1.23 4.69 84.66 0.40 1.63 16 14 N -0.93 -56.68 13.29 21.45 0.28 -56.39 16 15 Si 0.92 48.19 29.54 68.60 2.03 50.22 16 16 H -0.28 -15.00 7.11 99.48 0.71 -14.29 16 17 H -0.29 -14.92 7.11 99.48 0.71 -14.21 16 18 H -0.28 -14.39 7.11 99.48 0.71 -13.69 16 19 C 0.08 2.27 1.57 44.92 0.07 2.34 16 20 C -0.14 -4.38 4.10 30.60 0.13 -4.25 16 21 C -0.12 -2.64 5.48 30.58 0.17 -2.48 16 22 C -0.12 -2.21 5.47 30.59 0.17 -2.05 16 23 C -0.11 -1.72 5.59 30.60 0.17 -1.54 16 24 C -0.12 -2.16 5.47 30.59 0.17 -1.99 16 25 C -0.12 -2.60 5.48 30.59 0.17 -2.44 16 26 C -0.10 -3.11 4.60 30.59 0.14 -2.96 16 27 H 0.05 2.54 6.64 -2.39 -0.02 2.52 16 28 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.06 2.59 7.16 -2.39 -0.02 2.57 16 30 H 0.23 5.66 8.06 -2.91 -0.02 5.63 16 31 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.09 1.98 7.77 -2.39 -0.02 1.96 16 34 H 0.04 1.43 5.60 -2.38 -0.01 1.42 16 35 H 0.09 2.49 7.72 -2.38 -0.02 2.47 16 36 H -0.03 -1.71 7.38 -2.38 -0.02 -1.73 16 37 H 0.00 0.06 6.12 -2.39 -0.01 0.04 16 38 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 39 H 0.12 2.90 2.50 -2.38 -0.01 2.89 16 40 H 0.03 1.22 7.31 -2.39 -0.02 1.20 16 41 H 0.04 1.48 6.67 -2.39 -0.02 1.47 16 42 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.07 1.64 4.69 -2.39 -0.01 1.63 16 44 H 0.06 1.25 5.47 -2.39 -0.01 1.24 16 45 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.07 0.97 7.47 -2.39 -0.02 0.96 16 48 H 0.07 1.29 5.47 -2.38 -0.01 1.28 16 49 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 51 H 0.07 1.56 4.69 -2.39 -0.01 1.55 16 52 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 53 H 0.03 1.13 6.64 -2.38 -0.02 1.11 16 Total: -1.00 -71.49 378.27 2.75 -68.74 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.90 Total: 15.70 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 7.19 Total: -12.27 kcal Atomic # 7 Polarization: -115.02 SS G_CDS: -7.37 Total: -122.39 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 2.03 Total: 50.22 kcal Total: -71.49 2.75 -68.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235542029.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.544 kcal (2) G-P(sol) polarization free energy of solvation -71.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds