Wall clock time and date at job start Tue Mar 31 2020 12:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47215 * 2 1 4 4 C 1.52994 * 109.47314 * 180.02562 * 3 2 1 5 5 N 1.46907 * 109.47367 * 181.79399 * 4 3 2 6 6 C 1.46904 * 110.99986 * 75.91742 * 5 4 3 7 7 C 1.50693 * 109.46893 * 195.86497 * 6 5 4 8 8 H 1.08004 * 120.00442 * 355.41490 * 7 6 5 9 9 C 1.37879 * 119.99911 * 175.42108 * 7 6 5 10 10 N 1.31518 * 119.99887 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00126 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47047 * 90.00152 * 11 9 7 13 13 H 1.48502 * 109.47138 * 209.99672 * 11 9 7 14 14 H 1.48499 * 109.47214 * 330.00013 * 11 9 7 15 15 C 1.46897 * 111.00051 * 199.87678 * 5 4 3 16 16 C 1.50700 * 109.47124 * 66.04170 * 15 5 4 17 17 C 1.38166 * 120.03113 * 259.72355 * 16 15 5 18 18 C 1.38241 * 120.05615 * 179.75048 * 17 16 15 19 19 C 1.38289 * 120.11023 * 0.54836 * 18 17 16 20 20 C 1.50697 * 119.97120 * 179.72278 * 19 18 17 21 21 C 1.53005 * 109.47552 * 239.97911 * 20 19 18 22 22 C 1.52997 * 109.47318 * 359.97438 * 20 19 18 23 23 C 1.53005 * 109.47198 * 119.98082 * 20 19 18 24 24 C 1.38123 * 120.05566 * 359.70597 * 19 18 17 25 25 C 1.38711 * 120.02458 * 80.00014 * 16 15 5 26 26 O 1.35901 * 120.05963 * 359.96004 * 25 16 15 27 27 H 1.08998 * 109.47203 * 59.99741 * 1 2 3 28 28 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46867 * 299.99967 * 1 2 3 30 30 H 1.08992 * 109.47066 * 240.00203 * 2 1 3 31 31 H 1.08996 * 109.47394 * 119.99766 * 2 1 3 32 32 H 1.09005 * 109.47176 * 60.00222 * 3 2 1 33 33 H 1.08998 * 109.47247 * 300.00232 * 3 2 1 34 34 H 1.08998 * 109.47348 * 61.79020 * 4 3 2 35 35 H 1.09005 * 109.47094 * 301.79223 * 4 3 2 36 36 H 1.08999 * 109.46896 * 315.86819 * 6 5 4 37 37 H 1.09005 * 109.46529 * 75.86885 * 6 5 4 38 38 H 0.96999 * 119.99881 * 179.97438 * 10 9 7 39 39 H 1.09003 * 109.47206 * 186.04447 * 15 5 4 40 40 H 1.09002 * 109.46956 * 306.04232 * 15 5 4 41 41 H 1.08005 * 119.96793 * 0.02562 * 17 16 15 42 42 H 1.07996 * 119.94349 * 180.25112 * 18 17 16 43 43 H 1.09006 * 109.46626 * 60.00088 * 21 20 19 44 44 H 1.08999 * 109.47384 * 180.02562 * 21 20 19 45 45 H 1.08996 * 109.46871 * 300.00714 * 21 20 19 46 46 H 1.08999 * 109.47671 * 59.99516 * 22 20 19 47 47 H 1.08999 * 109.47287 * 179.97438 * 22 20 19 48 48 H 1.09005 * 109.47127 * 299.99463 * 22 20 19 49 49 H 1.08996 * 109.46766 * 59.99567 * 23 20 19 50 50 H 1.08999 * 109.47398 * 180.02562 * 23 20 19 51 51 H 1.09002 * 109.46971 * 300.00634 * 23 20 19 52 52 H 1.07997 * 120.02568 * 180.02562 * 24 19 18 53 53 H 0.96696 * 114.00463 * 89.98908 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8269 0.0427 6 6 3.9212 3.3923 1.3915 7 6 4.0561 4.8917 1.3238 8 1 4.3010 5.3702 0.3870 9 6 3.8670 5.6527 2.4579 10 7 3.5693 5.0701 3.5987 11 14 4.0349 7.5112 2.3742 12 1 2.7164 8.1134 2.0512 13 1 4.5058 8.0253 3.6854 14 1 5.0158 7.8727 1.3195 15 6 5.4510 2.9079 -0.4218 16 6 5.5137 2.5510 -1.8846 17 6 5.9141 1.2864 -2.2712 18 6 5.9669 0.9568 -3.6127 19 6 5.6303 1.8949 -4.5714 20 6 5.6949 1.5341 -6.0331 21 6 6.6841 2.4602 -6.7438 22 6 6.1586 0.0835 -6.1804 23 6 4.3080 1.6925 -6.6594 24 6 5.2344 3.1621 -4.1902 25 6 5.1751 3.4936 -2.8442 26 8 4.7856 4.7397 -2.4667 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6768 1.9564 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 3.9330 0.9569 -0.9064 35 1 3.9337 0.9010 0.8726 36 1 2.9424 3.1334 1.7952 37 1 4.6998 2.9862 2.0373 38 1 3.4366 5.6054 4.3966 39 1 5.8232 3.9224 -0.2790 40 1 6.0657 2.2117 0.1488 41 1 6.1818 0.5534 -1.5245 42 1 6.2762 -0.0335 -3.9127 43 1 7.6722 2.3473 -6.2976 44 1 6.7305 2.1995 -7.8011 45 1 6.3540 3.4936 -6.6388 46 1 5.4540 -0.5764 -5.6741 47 1 6.2049 -0.1775 -7.2377 48 1 7.1468 -0.0292 -5.7344 49 1 3.9778 2.7259 -6.5544 50 1 4.3546 1.4311 -7.7166 51 1 3.6032 1.0328 -6.1531 52 1 4.9712 3.8942 -4.9393 53 1 5.5129 5.3719 -2.3870 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235685197.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:38 Heat of formation + Delta-G solvation = -45.212808 kcal Electronic energy + Delta-G solvation = -27992.613549 eV Core-core repulsion = 24442.254871 eV Total energy + Delta-G solvation = -3550.358679 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.10507 -37.81375 -36.84498 -35.28498 -34.15852 -32.46173 -30.62673 -29.90682 -28.60234 -27.38209 -27.31469 -26.60808 -24.76661 -22.80831 -22.15016 -21.85200 -20.69004 -19.64191 -19.41385 -17.24853 -16.40929 -16.14613 -15.64937 -15.17595 -14.88149 -14.54824 -14.50695 -14.28798 -13.91441 -13.84586 -13.60408 -13.44330 -13.28480 -12.64880 -12.62418 -12.38276 -12.17280 -12.06268 -11.95359 -11.84703 -11.76682 -11.64748 -11.27429 -11.15842 -11.05003 -10.97583 -10.85096 -10.70990 -10.65292 -10.59659 -10.47845 -10.24671 -10.03233 -9.94185 -9.52772 -9.13772 -8.51183 -8.35808 -8.12843 -7.10687 -5.95063 -3.94730 1.53495 1.55831 3.36394 3.42287 3.45027 3.83146 4.42422 4.49067 4.60860 4.77172 4.86357 4.97933 5.16922 5.19962 5.24907 5.33616 5.39477 5.40308 5.42339 5.46857 5.50978 5.55546 5.60837 5.68769 5.72556 5.73350 5.82503 5.89198 5.91769 5.98650 6.06451 6.09907 6.12825 6.16201 6.17331 6.23021 6.25655 6.30257 6.37658 6.48623 6.55020 6.61836 6.74365 6.80851 6.89029 6.97091 7.09915 7.35615 7.40564 7.92588 8.14112 8.20778 8.31720 8.65375 9.14388 9.68623 11.15926 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.010981 B = 0.003934 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.197111 B = 7115.274647 C = 8794.067742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.111 4.111 4 C 0.054 3.946 5 N -0.521 5.521 6 C 0.193 3.807 7 C -0.498 4.498 8 H 0.067 0.933 9 C 0.053 3.947 10 N -0.902 5.902 11 Si 0.897 3.103 12 H -0.281 1.281 13 H -0.290 1.290 14 H -0.274 1.274 15 C 0.107 3.893 16 C -0.094 4.094 17 C -0.103 4.103 18 C -0.136 4.136 19 C -0.066 4.066 20 C -0.027 4.027 21 C -0.138 4.138 22 C -0.142 4.142 23 C -0.138 4.138 24 C -0.148 4.148 25 C 0.135 3.865 26 O -0.478 6.478 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.019 0.981 36 H 0.036 0.964 37 H -0.015 1.015 38 H 0.259 0.741 39 H 0.089 0.911 40 H 0.023 0.977 41 H 0.118 0.882 42 H 0.122 0.878 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.057 0.943 46 H 0.059 0.941 47 H 0.055 0.945 48 H 0.058 0.942 49 H 0.057 0.943 50 H 0.055 0.945 51 H 0.057 0.943 52 H 0.121 0.879 53 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.546 -9.926 -18.121 21.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.149 4.149 4 C -0.075 4.075 5 N -0.245 5.245 6 C 0.068 3.932 7 C -0.537 4.537 8 H 0.085 0.915 9 C -0.148 4.148 10 N -0.542 5.542 11 Si 0.725 3.275 12 H -0.208 1.208 13 H -0.216 1.216 14 H -0.199 1.199 15 C -0.021 4.021 16 C -0.095 4.095 17 C -0.122 4.122 18 C -0.154 4.154 19 C -0.066 4.066 20 C -0.027 4.027 21 C -0.195 4.195 22 C -0.200 4.200 23 C -0.196 4.196 24 C -0.166 4.166 25 C 0.090 3.910 26 O -0.287 6.287 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.037 0.963 36 H 0.054 0.946 37 H 0.003 0.997 38 H 0.069 0.931 39 H 0.108 0.892 40 H 0.042 0.958 41 H 0.136 0.864 42 H 0.140 0.860 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.074 0.926 48 H 0.077 0.923 49 H 0.076 0.924 50 H 0.074 0.926 51 H 0.076 0.924 52 H 0.139 0.861 53 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 3.655 -9.832 -18.223 21.026 hybrid contribution 0.922 0.768 0.769 1.425 sum 4.577 -9.065 -17.454 20.193 Atomic orbital electron populations 1.21749 0.96265 1.00750 1.01914 1.21492 0.95530 0.97793 1.01141 1.21532 0.95367 0.95058 1.02906 1.22080 0.95436 0.90967 0.99018 1.62092 1.17250 1.15983 1.29149 1.19776 0.96464 0.94911 0.82041 1.21224 1.46204 0.91176 0.95063 0.91474 1.24987 0.95736 0.98607 0.95439 1.69965 1.49138 1.35387 0.99745 0.86526 0.78310 0.85689 0.76984 1.20765 1.21571 1.19942 1.20783 0.91086 1.01668 0.88570 1.20461 0.98355 0.93877 0.96795 1.20964 0.99817 0.95623 0.95772 1.21029 1.02553 0.99347 0.92451 1.19511 0.99438 0.93383 0.94309 1.19457 0.96056 0.95763 0.91449 1.21886 0.98792 0.99208 0.99600 1.21950 1.01326 0.95204 1.01484 1.21891 0.95501 1.02265 0.99916 1.21179 1.02972 0.97197 0.95260 1.18257 0.95888 0.86479 0.90422 1.84961 1.35523 1.18022 1.90213 0.92913 0.93424 0.92682 0.92729 0.92551 0.91453 0.91852 0.92274 0.96262 0.94625 0.99745 0.93114 0.89244 0.95843 0.86363 0.86048 0.92533 0.92586 0.92423 0.92236 0.92623 0.92292 0.92351 0.92612 0.92427 0.86121 0.76160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 37.16 0.37 -1.58 16 2 C -0.12 -1.77 5.93 -26.73 -0.16 -1.92 16 3 C -0.11 -2.00 5.35 -26.73 -0.14 -2.15 16 4 C 0.05 1.02 4.84 -3.82 -0.02 1.00 16 5 N -0.52 -11.44 4.37 -237.51 -1.04 -12.47 16 6 C 0.19 5.07 4.55 -4.98 -0.02 5.04 16 7 C -0.50 -14.00 8.53 -34.44 -0.29 -14.29 16 8 H 0.07 1.87 7.42 -52.48 -0.39 1.48 16 9 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 10 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 11 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 15 C 0.11 2.09 4.60 -4.98 -0.02 2.06 16 16 C -0.09 -1.56 4.67 -104.47 -0.49 -2.05 16 17 C -0.10 -1.47 8.25 -39.61 -0.33 -1.80 16 18 C -0.14 -1.69 8.97 -39.56 -0.36 -2.05 16 19 C -0.07 -0.81 4.76 -104.65 -0.50 -1.31 16 20 C -0.03 -0.26 0.85 -155.66 -0.13 -0.39 16 21 C -0.14 -1.19 8.29 37.16 0.31 -0.88 16 22 C -0.14 -1.18 7.13 37.16 0.26 -0.91 16 23 C -0.14 -1.29 8.29 37.16 0.31 -0.98 16 24 C -0.15 -2.03 8.65 -39.43 -0.34 -2.37 16 25 C 0.13 2.19 6.68 -39.22 -0.26 1.93 16 26 O -0.48 -8.21 12.74 -19.43 -0.25 -8.46 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.37 6.72 -51.93 -0.35 1.02 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.06 1.04 5.76 -51.93 -0.30 0.74 16 35 H 0.02 0.37 8.00 -51.93 -0.42 -0.04 16 36 H 0.04 1.01 6.52 -51.93 -0.34 0.67 16 37 H -0.02 -0.43 8.05 -51.93 -0.42 -0.84 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.09 1.88 6.73 -51.93 -0.35 1.53 16 40 H 0.02 0.45 7.98 -51.93 -0.41 0.03 16 41 H 0.12 1.56 8.03 -52.48 -0.42 1.14 16 42 H 0.12 1.25 5.89 -52.49 -0.31 0.94 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.51 7.39 -51.93 -0.38 0.12 16 46 H 0.06 0.50 7.51 -51.93 -0.39 0.11 16 47 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.06 0.47 7.51 -51.93 -0.39 0.08 16 49 H 0.06 0.57 7.39 -51.93 -0.38 0.18 16 50 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 52 H 0.12 1.51 7.10 -52.49 -0.37 1.14 16 53 H 0.38 4.93 9.06 45.56 0.41 5.34 16 LS Contribution 411.90 15.07 6.21 6.21 Total: -1.00 -31.30 411.90 -10.27 -41.57 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -9.00 Total: 3.87 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: -1.91 Total: -21.25 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: -0.30 Total: -38.77 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -0.25 Total: -8.46 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -31.30 -10.27 -41.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235685197.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.648 kcal (2) G-P(sol) polarization free energy of solvation -31.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds