Wall clock time and date at job start Tue Mar 31 2020 12:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47215 * 2 1 4 4 C 1.52994 * 109.47314 * 180.02562 * 3 2 1 5 5 N 1.46907 * 109.47367 * 181.79399 * 4 3 2 6 6 C 1.46904 * 110.99986 * 75.91742 * 5 4 3 7 7 C 1.50693 * 109.46893 * 195.86497 * 6 5 4 8 8 H 1.08004 * 120.00442 * 355.41490 * 7 6 5 9 9 C 1.37879 * 119.99911 * 175.42108 * 7 6 5 10 10 N 1.31518 * 119.99887 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00126 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47047 * 90.00152 * 11 9 7 13 13 H 1.48502 * 109.47138 * 209.99672 * 11 9 7 14 14 H 1.48499 * 109.47214 * 330.00013 * 11 9 7 15 15 C 1.46897 * 111.00051 * 199.87678 * 5 4 3 16 16 C 1.50700 * 109.47124 * 66.04170 * 15 5 4 17 17 C 1.38166 * 120.03113 * 259.72355 * 16 15 5 18 18 C 1.38241 * 120.05615 * 179.75048 * 17 16 15 19 19 C 1.38289 * 120.11023 * 0.54836 * 18 17 16 20 20 C 1.50697 * 119.97120 * 179.72278 * 19 18 17 21 21 C 1.53005 * 109.47552 * 239.97911 * 20 19 18 22 22 C 1.52997 * 109.47318 * 359.97438 * 20 19 18 23 23 C 1.53005 * 109.47198 * 119.98082 * 20 19 18 24 24 C 1.38123 * 120.05566 * 359.70597 * 19 18 17 25 25 C 1.38711 * 120.02458 * 80.00014 * 16 15 5 26 26 O 1.35901 * 120.05963 * 359.96004 * 25 16 15 27 27 H 1.08998 * 109.47203 * 59.99741 * 1 2 3 28 28 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46867 * 299.99967 * 1 2 3 30 30 H 1.08992 * 109.47066 * 240.00203 * 2 1 3 31 31 H 1.08996 * 109.47394 * 119.99766 * 2 1 3 32 32 H 1.09005 * 109.47176 * 60.00222 * 3 2 1 33 33 H 1.08998 * 109.47247 * 300.00232 * 3 2 1 34 34 H 1.08998 * 109.47348 * 61.79020 * 4 3 2 35 35 H 1.09005 * 109.47094 * 301.79223 * 4 3 2 36 36 H 1.08999 * 109.46896 * 315.86819 * 6 5 4 37 37 H 1.09005 * 109.46529 * 75.86885 * 6 5 4 38 38 H 0.96999 * 119.99881 * 179.97438 * 10 9 7 39 39 H 1.09003 * 109.47206 * 186.04447 * 15 5 4 40 40 H 1.09002 * 109.46956 * 306.04232 * 15 5 4 41 41 H 1.08005 * 119.96793 * 0.02562 * 17 16 15 42 42 H 1.07996 * 119.94349 * 180.25112 * 18 17 16 43 43 H 1.09006 * 109.46626 * 60.00088 * 21 20 19 44 44 H 1.08999 * 109.47384 * 180.02562 * 21 20 19 45 45 H 1.08996 * 109.46871 * 300.00714 * 21 20 19 46 46 H 1.08999 * 109.47671 * 59.99516 * 22 20 19 47 47 H 1.08999 * 109.47287 * 179.97438 * 22 20 19 48 48 H 1.09005 * 109.47127 * 299.99463 * 22 20 19 49 49 H 1.08996 * 109.46766 * 59.99567 * 23 20 19 50 50 H 1.08999 * 109.47398 * 180.02562 * 23 20 19 51 51 H 1.09002 * 109.46971 * 300.00634 * 23 20 19 52 52 H 1.07997 * 120.02568 * 180.02562 * 24 19 18 53 53 H 0.96696 * 114.00463 * 89.98908 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8269 0.0427 6 6 3.9212 3.3923 1.3915 7 6 4.0561 4.8917 1.3238 8 1 4.3010 5.3702 0.3870 9 6 3.8670 5.6527 2.4579 10 7 3.5693 5.0701 3.5987 11 14 4.0349 7.5112 2.3742 12 1 2.7164 8.1134 2.0512 13 1 4.5058 8.0253 3.6854 14 1 5.0158 7.8727 1.3195 15 6 5.4510 2.9079 -0.4218 16 6 5.5137 2.5510 -1.8846 17 6 5.9141 1.2864 -2.2712 18 6 5.9669 0.9568 -3.6127 19 6 5.6303 1.8949 -4.5714 20 6 5.6949 1.5341 -6.0331 21 6 6.6841 2.4602 -6.7438 22 6 6.1586 0.0835 -6.1804 23 6 4.3080 1.6925 -6.6594 24 6 5.2344 3.1621 -4.1902 25 6 5.1751 3.4936 -2.8442 26 8 4.7856 4.7397 -2.4667 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6768 1.9564 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 3.9330 0.9569 -0.9064 35 1 3.9337 0.9010 0.8726 36 1 2.9424 3.1334 1.7952 37 1 4.6998 2.9862 2.0373 38 1 3.4366 5.6054 4.3966 39 1 5.8232 3.9224 -0.2790 40 1 6.0657 2.2117 0.1488 41 1 6.1818 0.5534 -1.5245 42 1 6.2762 -0.0335 -3.9127 43 1 7.6722 2.3473 -6.2976 44 1 6.7305 2.1995 -7.8011 45 1 6.3540 3.4936 -6.6388 46 1 5.4540 -0.5764 -5.6741 47 1 6.2049 -0.1775 -7.2377 48 1 7.1468 -0.0292 -5.7344 49 1 3.9778 2.7259 -6.5544 50 1 4.3546 1.4311 -7.7166 51 1 3.6032 1.0328 -6.1531 52 1 4.9712 3.8942 -4.9393 53 1 5.5129 5.3719 -2.3870 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235685197.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:37 Heat of formation + Delta-G solvation = -63.235612 kcal Electronic energy + Delta-G solvation = -27993.395077 eV Core-core repulsion = 24442.254871 eV Total energy + Delta-G solvation = -3551.140206 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.21934 -39.04020 -38.27646 -36.39309 -35.61899 -34.50170 -31.86531 -31.02180 -30.21359 -28.41238 -28.05979 -27.97923 -26.24069 -24.57768 -23.26551 -23.15803 -21.98580 -21.30662 -20.40802 -18.56998 -18.33645 -17.22207 -16.96567 -16.76220 -16.29777 -16.03051 -15.84748 -15.41334 -15.14029 -15.06121 -14.82823 -14.55670 -14.36370 -14.13833 -13.85518 -13.75840 -13.41974 -13.30700 -13.17474 -12.98878 -12.82162 -12.75438 -12.59920 -12.52848 -12.47125 -12.30039 -12.18235 -12.06759 -11.98167 -11.76091 -11.71133 -11.67360 -11.44851 -11.32358 -11.20724 -11.00775 -10.57016 -9.62614 -9.30560 -8.91872 -8.16421 -6.24854 0.39885 0.45207 1.40278 1.42777 1.53132 2.42179 2.70805 3.15172 3.38257 3.45685 3.72084 3.87226 3.97424 4.04018 4.09041 4.17141 4.22061 4.32091 4.32169 4.42773 4.44372 4.55879 4.60999 4.69468 4.74665 4.82544 4.83011 4.84341 4.93977 4.95273 4.97451 5.03272 5.06018 5.08363 5.10729 5.12528 5.16866 5.21822 5.26603 5.28972 5.29882 5.39723 5.41411 5.48276 5.49071 5.56913 5.72241 5.73136 5.74242 6.02329 6.12819 6.42912 6.69643 6.91570 7.00899 7.43835 8.94640 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.010981 B = 0.003934 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.197111 B = 7115.274647 C = 8794.067742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.105 4.105 4 C 0.056 3.944 5 N -0.529 5.529 6 C 0.211 3.789 7 C -0.511 4.511 8 H 0.065 0.935 9 C -0.001 4.001 10 N -0.938 5.938 11 Si 0.967 3.033 12 H -0.278 1.278 13 H -0.283 1.283 14 H -0.261 1.261 15 C 0.113 3.887 16 C -0.116 4.116 17 C -0.104 4.104 18 C -0.130 4.130 19 C -0.056 4.056 20 C -0.027 4.027 21 C -0.137 4.137 22 C -0.143 4.143 23 C -0.139 4.139 24 C -0.149 4.149 25 C 0.117 3.883 26 O -0.503 6.503 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.034 0.966 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.013 0.987 36 H 0.007 0.993 37 H -0.045 1.045 38 H 0.262 0.738 39 H 0.066 0.934 40 H 0.022 0.978 41 H 0.128 0.872 42 H 0.150 0.850 43 H 0.054 0.946 44 H 0.073 0.927 45 H 0.051 0.949 46 H 0.059 0.941 47 H 0.071 0.929 48 H 0.062 0.938 49 H 0.049 0.951 50 H 0.074 0.926 51 H 0.049 0.951 52 H 0.131 0.869 53 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.064 -11.040 -21.044 24.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C -0.143 4.143 4 C -0.072 4.072 5 N -0.252 5.252 6 C 0.085 3.915 7 C -0.550 4.550 8 H 0.083 0.917 9 C -0.198 4.198 10 N -0.579 5.579 11 Si 0.792 3.208 12 H -0.204 1.204 13 H -0.209 1.209 14 H -0.185 1.185 15 C -0.014 4.014 16 C -0.117 4.117 17 C -0.122 4.122 18 C -0.148 4.148 19 C -0.057 4.057 20 C -0.027 4.027 21 C -0.194 4.194 22 C -0.200 4.200 23 C -0.196 4.196 24 C -0.167 4.167 25 C 0.072 3.928 26 O -0.314 6.314 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.032 0.968 36 H 0.025 0.975 37 H -0.027 1.027 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.040 0.960 41 H 0.146 0.854 42 H 0.168 0.832 43 H 0.073 0.927 44 H 0.092 0.908 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.090 0.910 48 H 0.081 0.919 49 H 0.068 0.932 50 H 0.093 0.907 51 H 0.068 0.932 52 H 0.149 0.851 53 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 4.187 -10.955 -21.168 24.200 hybrid contribution 0.789 1.060 1.596 2.073 sum 4.977 -9.894 -19.572 22.488 Atomic orbital electron populations 1.21738 0.94985 1.02262 1.01512 1.21444 0.96635 0.94973 1.02159 1.21478 0.94675 0.97423 1.00711 1.22145 0.96031 0.89376 0.99639 1.62033 1.19241 1.17866 1.26095 1.19386 0.93700 0.94552 0.83893 1.21487 1.46165 0.92190 0.95127 0.91666 1.25893 0.95149 1.03816 0.94912 1.70099 1.49955 1.37377 1.00494 0.85415 0.78584 0.79321 0.77471 1.20351 1.20913 1.18504 1.20644 0.89404 1.00385 0.90993 1.20226 1.01366 0.95480 0.94678 1.21100 0.99294 0.94716 0.97114 1.21334 1.01412 1.00577 0.91454 1.19909 0.97218 0.92442 0.96117 1.19546 0.96653 0.97102 0.89424 1.21883 0.98261 0.98683 1.00568 1.21959 1.01422 0.93841 1.02734 1.21896 0.94989 1.01634 1.01054 1.21289 1.02909 0.98282 0.94260 1.18480 0.96800 0.86037 0.91446 1.84902 1.37016 1.18978 1.90523 0.92699 0.90907 0.93787 0.90835 0.92287 0.94760 0.92816 0.90135 0.96836 0.97534 1.02709 0.92911 0.91573 0.95950 0.85363 0.83232 0.92678 0.90823 0.92940 0.92216 0.91030 0.91878 0.93158 0.90684 0.93173 0.85113 0.74702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.91 71.98 0.71 -2.96 16 2 C -0.11 -3.21 5.93 30.60 0.18 -3.03 16 3 C -0.10 -3.91 5.35 30.59 0.16 -3.74 16 4 C 0.06 2.19 4.84 86.30 0.42 2.61 16 5 N -0.53 -24.34 4.37 -905.35 -3.96 -28.29 16 6 C 0.21 11.77 4.55 85.55 0.39 12.16 16 7 C -0.51 -29.96 8.53 25.60 0.22 -29.74 16 8 H 0.07 3.77 7.42 -2.91 -0.02 3.75 16 9 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 10 N -0.94 -58.12 13.29 21.45 0.28 -57.84 16 11 Si 0.97 45.65 29.54 68.60 2.03 47.68 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 14 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 15 C 0.11 4.62 4.60 85.56 0.39 5.02 16 16 C -0.12 -3.90 4.67 -19.77 -0.09 -3.99 16 17 C -0.10 -2.82 8.25 22.25 0.18 -2.64 16 18 C -0.13 -2.90 8.97 22.28 0.20 -2.70 16 19 C -0.06 -1.25 4.76 -19.88 -0.09 -1.34 16 20 C -0.03 -0.44 0.85 -52.93 -0.05 -0.48 16 21 C -0.14 -1.95 8.29 71.98 0.60 -1.35 16 22 C -0.14 -1.80 7.13 71.98 0.51 -1.28 16 23 C -0.14 -2.19 8.29 71.98 0.60 -1.60 16 24 C -0.15 -3.93 8.65 22.37 0.19 -3.74 16 25 C 0.12 3.82 6.68 22.51 0.15 3.97 16 26 O -0.50 -17.78 12.74 -92.43 -1.18 -18.96 16 27 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.03 1.48 6.72 -2.38 -0.02 1.46 16 33 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.08 2.80 5.76 -2.39 -0.01 2.78 16 35 H 0.01 0.54 8.00 -2.38 -0.02 0.52 16 36 H 0.01 0.40 6.52 -2.39 -0.02 0.39 16 37 H -0.04 -2.69 8.05 -2.38 -0.02 -2.71 16 38 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 39 H 0.07 2.95 6.73 -2.39 -0.02 2.93 16 40 H 0.02 0.89 7.98 -2.39 -0.02 0.88 16 41 H 0.13 3.17 8.03 -2.91 -0.02 3.15 16 42 H 0.15 2.50 5.89 -2.91 -0.02 2.48 16 43 H 0.05 0.80 8.14 -2.38 -0.02 0.79 16 44 H 0.07 0.80 8.14 -2.39 -0.02 0.79 16 45 H 0.05 0.80 7.39 -2.39 -0.02 0.78 16 46 H 0.06 0.76 7.51 -2.39 -0.02 0.75 16 47 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.06 0.76 7.51 -2.38 -0.02 0.74 16 49 H 0.05 0.87 7.39 -2.39 -0.02 0.85 16 50 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 51 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 52 H 0.13 3.13 7.10 -2.91 -0.02 3.11 16 53 H 0.40 10.68 9.06 -74.06 -0.67 10.01 16 Total: -1.00 -70.03 411.90 2.51 -67.52 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.19 Total: 24.30 kcal Atomic # 6 Polarization: -39.55 SS G_CDS: 5.14 Total: -34.41 kcal Atomic # 7 Polarization: -82.46 SS G_CDS: -3.67 Total: -86.13 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -1.18 Total: -18.96 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -70.03 2.51 -67.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235685197.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.284 kcal (2) G-P(sol) polarization free energy of solvation -70.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds