Wall clock time and date at job start Tue Mar 31 2020 12:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46835 * 2 1 4 4 C 1.52997 * 109.46835 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47188 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47188 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.46835 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47111 * 180.02562 * 7 6 5 9 9 C 1.52994 * 109.47292 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.47587 * 54.99431 * 9 8 7 11 11 O 1.42901 * 109.47165 * 294.99907 * 9 8 7 12 12 C 1.53004 * 109.47331 * 175.00004 * 9 8 7 13 13 N 1.46499 * 109.47001 * 184.99686 * 12 9 8 14 14 C 1.38731 * 119.99566 * 179.97438 * 13 12 9 15 15 C 1.38750 * 120.29797 * 0.02562 * 14 13 12 16 16 C 1.38155 * 120.02627 * 180.24917 * 15 14 13 17 17 C 1.38904 * 120.62634 * 359.44306 * 16 15 14 18 18 C 1.36439 * 120.59885 * 0.55762 * 17 16 15 19 19 C 1.40732 * 119.94969 * 359.72359 * 18 17 16 20 20 C 1.41040 * 120.30869 * 180.02562 * 19 18 17 21 21 H 1.08004 * 120.00567 * 153.66015 * 20 19 18 22 22 C 1.39931 * 120.00108 * 333.66061 * 20 19 18 23 23 N 1.30879 * 119.99847 * 343.99294 * 22 20 19 24 24 Si 1.86797 * 120.00477 * 163.99472 * 22 20 19 25 25 H 1.48499 * 109.47211 * 89.99468 * 24 22 20 26 26 H 1.48493 * 109.47616 * 210.00237 * 24 22 20 27 27 H 1.48508 * 109.46970 * 330.00115 * 24 22 20 28 28 H 1.09001 * 109.47521 * 299.99337 * 1 2 3 29 29 H 1.09002 * 109.47827 * 59.99790 * 1 2 3 30 30 H 1.09007 * 109.47475 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46786 * 240.00542 * 2 1 3 32 32 H 1.08994 * 109.47498 * 120.00077 * 2 1 3 33 33 H 1.09001 * 109.46991 * 60.00667 * 3 2 1 34 34 H 1.08994 * 109.47141 * 300.00296 * 3 2 1 35 35 H 1.09001 * 109.46786 * 60.00542 * 4 3 2 36 36 H 1.09002 * 109.47827 * 300.00209 * 4 3 2 37 37 H 1.09004 * 109.46951 * 59.99958 * 5 4 3 38 38 H 1.09004 * 109.47312 * 300.00638 * 5 4 3 39 39 H 1.08999 * 109.47098 * 60.00844 * 6 5 4 40 40 H 1.08994 * 109.47498 * 299.99955 * 6 5 4 41 41 H 1.09001 * 109.46991 * 60.00667 * 7 6 5 42 42 H 1.08997 * 109.47644 * 300.00223 * 7 6 5 43 43 H 1.08992 * 109.46979 * 60.00073 * 8 7 6 44 44 H 1.09003 * 109.46474 * 300.00064 * 8 7 6 45 45 H 0.96708 * 113.99682 * 300.00381 * 11 9 8 46 46 H 1.08992 * 109.46912 * 64.99893 * 12 9 8 47 47 H 1.08996 * 109.46630 * 304.99655 * 12 9 8 48 48 H 0.97000 * 120.00274 * 0.02562 * 13 12 9 49 49 H 1.07999 * 119.98607 * 359.97020 * 15 14 13 50 50 H 1.08009 * 119.68622 * 179.72006 * 16 15 14 51 51 H 1.08003 * 119.69997 * 180.28200 * 17 16 15 52 52 H 1.07997 * 120.02691 * 179.74494 * 18 17 16 53 53 H 0.97000 * 120.00208 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8851 0.0013 6 6 5.6099 2.8851 0.0013 7 6 6.1198 4.3277 0.0013 8 6 7.6499 4.3277 0.0006 9 6 8.1598 5.7702 0.0013 10 1 7.7255 6.3088 0.8435 11 8 7.7813 6.4098 -1.2192 12 6 9.6847 5.7720 0.1264 13 7 10.1631 7.1514 0.2470 14 6 11.5209 7.4060 0.3738 15 6 12.4312 6.3590 0.3866 16 6 13.7818 6.6186 0.5184 17 6 14.2440 7.9239 0.6275 18 6 13.3715 8.9728 0.6178 19 6 11.9900 8.7364 0.4906 20 6 11.0814 9.8150 0.4792 21 1 10.1299 9.7144 -0.0218 22 6 11.4126 11.0156 1.1171 23 7 12.3986 11.0494 1.9771 24 14 10.4476 12.5702 0.7412 25 1 9.2993 12.6784 1.6766 26 1 11.3311 13.7527 0.9030 27 1 9.9449 12.5154 -0.6552 28 1 -0.3634 0.5137 0.8900 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 1.6766 1.9563 0.8901 34 1 1.6765 1.9564 -0.8899 35 1 3.9335 0.9287 -0.8892 36 1 3.9330 0.9289 0.8908 37 1 3.7162 3.3987 0.8913 38 1 3.7169 3.3993 -0.8887 39 1 5.9732 2.3718 -0.8890 40 1 5.9732 2.3709 0.8910 41 1 5.7565 4.8414 0.8914 42 1 5.7565 4.8415 -0.8886 43 1 8.0128 3.8141 -0.8895 44 1 8.0135 3.8137 0.8905 45 1 8.1331 5.9830 -2.0125 46 1 10.1224 5.3118 -0.7594 47 1 9.9772 5.2073 1.0115 48 1 9.5304 7.8867 0.2389 49 1 12.0835 5.3403 0.2981 50 1 14.4852 5.7991 0.5323 51 1 15.3034 8.1100 0.7253 52 1 13.7407 9.9838 0.7074 53 1 12.6284 11.8817 2.4190 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252130943.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:24 Heat of formation + Delta-G solvation = -84.043661 kcal Electronic energy + Delta-G solvation = -25595.169656 eV Core-core repulsion = 22043.127146 eV Total energy + Delta-G solvation = -3552.042511 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -38.56496 -37.58666 -36.95589 -34.93450 -34.03213 -33.41365 -32.29442 -30.08266 -29.36269 -28.16680 -26.46281 -25.00264 -24.18122 -22.30198 -21.57560 -21.18293 -20.98563 -20.46815 -19.72729 -17.16395 -16.57667 -16.40393 -15.99422 -15.90329 -15.13610 -14.87685 -14.63721 -14.34923 -14.03722 -13.95173 -13.85574 -13.56176 -13.00929 -12.95603 -12.60064 -12.46081 -12.36699 -12.34046 -12.08961 -11.85759 -11.68689 -11.51757 -11.47534 -11.19169 -11.15033 -11.10298 -10.96575 -10.83745 -10.81971 -10.70230 -10.67512 -10.61839 -10.36168 -9.77658 -9.45428 -9.37278 -9.05696 -8.81320 -7.28182 -6.64002 -6.19551 -4.06402 2.89221 3.14477 3.19174 3.26696 3.31856 4.04710 4.14018 4.37874 4.51272 4.61688 4.66688 4.73732 4.77968 4.83522 4.89945 4.94881 5.08328 5.13581 5.18128 5.34639 5.37855 5.39530 5.41214 5.54758 5.56203 5.62969 5.65794 5.73849 5.76827 5.79512 5.84038 5.84286 5.91991 5.95931 6.01103 6.05760 6.13565 6.25141 6.30768 6.33233 6.51634 6.66774 7.10482 7.26408 7.38507 7.55274 7.74246 7.80521 7.91079 8.26337 8.30253 8.52486 8.81424 8.94753 9.08179 9.21733 10.37656 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.017310 B = 0.001843 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.157743 B =15188.938623 C =16500.437983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.122 4.122 4 C -0.121 4.121 5 C -0.121 4.121 6 C -0.120 4.120 7 C -0.115 4.115 8 C -0.147 4.147 9 C 0.096 3.904 10 H 0.101 0.899 11 O -0.556 6.556 12 C 0.107 3.893 13 N -0.744 5.744 14 C 0.114 3.886 15 C -0.179 4.179 16 C -0.198 4.198 17 C -0.146 4.146 18 C -0.139 4.139 19 C 0.067 3.933 20 C -0.465 4.465 21 H 0.071 0.929 22 C 0.076 3.924 23 N -0.804 5.804 24 Si 0.902 3.098 25 H -0.273 1.273 26 H -0.278 1.278 27 H -0.263 1.263 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.372 0.628 46 H 0.045 0.955 47 H 0.051 0.949 48 H 0.399 0.601 49 H 0.085 0.915 50 H 0.083 0.917 51 H 0.082 0.918 52 H 0.116 0.884 53 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.187 -16.700 -3.538 24.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.159 4.159 4 C -0.158 4.158 5 C -0.158 4.158 6 C -0.157 4.157 7 C -0.153 4.153 8 C -0.186 4.186 9 C 0.037 3.963 10 H 0.119 0.881 11 O -0.361 6.361 12 C -0.019 4.019 13 N -0.379 5.379 14 C 0.014 3.986 15 C -0.202 4.202 16 C -0.218 4.218 17 C -0.166 4.166 18 C -0.160 4.160 19 C 0.062 3.938 20 C -0.496 4.496 21 H 0.089 0.911 22 C -0.140 4.140 23 N -0.431 5.431 24 Si 0.727 3.273 25 H -0.198 1.198 26 H -0.203 1.203 27 H -0.187 1.187 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.219 0.781 46 H 0.063 0.937 47 H 0.069 0.931 48 H 0.234 0.766 49 H 0.103 0.897 50 H 0.101 0.899 51 H 0.101 0.899 52 H 0.134 0.866 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.388 -16.320 -2.969 24.031 hybrid contribution -0.205 0.513 -0.308 0.632 sum -17.593 -15.807 -3.277 23.877 Atomic orbital electron populations 1.21785 0.95994 1.01514 1.01810 1.21547 0.95788 0.97096 1.01927 1.21640 0.95613 0.96598 1.02053 1.21622 0.95183 0.97071 1.01944 1.21612 0.95599 0.96505 1.02093 1.21615 0.95181 0.97074 1.01854 1.21525 0.94729 0.96362 1.02661 1.22232 0.96450 0.97037 1.02861 1.22178 0.93423 0.92684 0.88013 0.88124 1.86596 1.76558 1.57433 1.15481 1.21697 0.93206 0.86785 1.00223 1.43826 1.04850 1.04783 1.84436 1.17944 0.82819 0.93468 1.04326 1.20008 0.93233 0.95462 1.11527 1.20124 0.94150 0.95401 1.12130 1.20273 0.97404 0.93317 1.05612 1.20791 0.92322 0.97979 1.04890 1.17234 0.92791 0.89464 0.94269 1.19137 1.02901 0.96436 1.31089 0.91076 1.25749 0.94976 1.00165 0.93082 1.69843 1.25922 1.27976 1.19389 0.86420 0.79919 0.80995 0.79946 1.19816 1.20336 1.18719 0.92774 0.92785 0.92879 0.92133 0.92123 0.92070 0.92068 0.92132 0.92119 0.92064 0.92049 0.92193 0.92172 0.92056 0.91334 0.91579 0.90953 0.78130 0.93691 0.93118 0.76553 0.89653 0.89860 0.89936 0.86575 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.46 16 2 C -0.13 -0.74 5.93 -26.73 -0.16 -0.89 16 3 C -0.12 -0.77 5.21 -26.73 -0.14 -0.91 16 4 C -0.12 -0.81 5.21 -26.73 -0.14 -0.95 16 5 C -0.12 -0.90 5.21 -26.73 -0.14 -1.04 16 6 C -0.12 -0.95 5.21 -26.73 -0.14 -1.09 16 7 C -0.12 -1.07 5.11 -26.73 -0.14 -1.21 16 8 C -0.15 -1.46 4.89 -26.73 -0.13 -1.59 16 9 C 0.10 1.24 3.00 -26.73 -0.08 1.16 16 10 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 11 O -0.56 -7.54 12.82 -35.23 -0.45 -7.99 16 12 C 0.11 1.69 4.54 -4.04 -0.02 1.67 16 13 N -0.74 -15.33 5.58 -58.20 -0.32 -15.66 16 14 C 0.11 2.77 6.68 -83.29 -0.56 2.22 16 15 C -0.18 -4.13 9.30 -39.42 -0.37 -4.50 16 16 C -0.20 -4.61 10.03 -39.37 -0.40 -5.00 16 17 C -0.15 -3.59 9.96 -39.98 -0.40 -3.99 16 18 C -0.14 -3.73 8.62 -39.29 -0.34 -4.07 16 19 C 0.07 1.80 5.57 -106.63 -0.59 1.21 16 20 C -0.46 -12.40 8.49 -37.89 -0.32 -12.72 16 21 H 0.07 1.83 6.72 -52.48 -0.35 1.48 16 22 C 0.08 1.95 5.16 -17.32 -0.09 1.86 16 23 N -0.80 -21.45 10.97 55.55 0.61 -20.84 16 24 Si 0.90 19.33 29.59 -169.99 -5.03 14.30 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 26 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 27 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.69 7.82 -51.93 -0.41 0.28 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.37 3.92 9.05 45.56 0.41 4.33 16 46 H 0.05 0.69 7.94 -51.93 -0.41 0.28 16 47 H 0.05 0.81 7.94 -51.93 -0.41 0.39 16 48 H 0.40 8.47 6.72 -40.82 -0.27 8.20 16 49 H 0.09 1.75 6.73 -52.49 -0.35 1.40 16 50 H 0.08 1.72 8.06 -52.48 -0.42 1.29 16 51 H 0.08 1.83 8.06 -52.48 -0.42 1.41 16 52 H 0.12 3.22 6.22 -52.49 -0.33 2.90 16 53 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 LS Contribution 420.32 15.07 6.33 6.33 Total: -1.00 -28.78 420.32 -11.93 -40.71 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -9.29 Total: 13.44 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: -3.77 Total: -30.30 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.28 Total: -36.50 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -0.45 Total: -7.99 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -28.78 -11.93 -40.71 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252130943.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.333 kcal (2) G-P(sol) polarization free energy of solvation -28.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds