Wall clock time and date at job start Tue Mar 31 2020 12:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46835 * 2 1 4 4 C 1.52997 * 109.46835 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47188 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47188 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.46835 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47111 * 180.02562 * 7 6 5 9 9 C 1.52994 * 109.47292 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.47587 * 54.99431 * 9 8 7 11 11 O 1.42901 * 109.47165 * 294.99907 * 9 8 7 12 12 C 1.53004 * 109.47331 * 175.00004 * 9 8 7 13 13 N 1.46499 * 109.47001 * 184.99686 * 12 9 8 14 14 C 1.38731 * 119.99566 * 179.97438 * 13 12 9 15 15 C 1.38750 * 120.29797 * 0.02562 * 14 13 12 16 16 C 1.38155 * 120.02627 * 180.24917 * 15 14 13 17 17 C 1.38904 * 120.62634 * 359.44306 * 16 15 14 18 18 C 1.36439 * 120.59885 * 0.55762 * 17 16 15 19 19 C 1.40732 * 119.94969 * 359.72359 * 18 17 16 20 20 C 1.41040 * 120.30869 * 180.02562 * 19 18 17 21 21 H 1.08004 * 120.00567 * 153.66015 * 20 19 18 22 22 C 1.39931 * 120.00108 * 333.66061 * 20 19 18 23 23 N 1.30879 * 119.99847 * 343.99294 * 22 20 19 24 24 Si 1.86797 * 120.00477 * 163.99472 * 22 20 19 25 25 H 1.48499 * 109.47211 * 89.99468 * 24 22 20 26 26 H 1.48493 * 109.47616 * 210.00237 * 24 22 20 27 27 H 1.48508 * 109.46970 * 330.00115 * 24 22 20 28 28 H 1.09001 * 109.47521 * 299.99337 * 1 2 3 29 29 H 1.09002 * 109.47827 * 59.99790 * 1 2 3 30 30 H 1.09007 * 109.47475 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46786 * 240.00542 * 2 1 3 32 32 H 1.08994 * 109.47498 * 120.00077 * 2 1 3 33 33 H 1.09001 * 109.46991 * 60.00667 * 3 2 1 34 34 H 1.08994 * 109.47141 * 300.00296 * 3 2 1 35 35 H 1.09001 * 109.46786 * 60.00542 * 4 3 2 36 36 H 1.09002 * 109.47827 * 300.00209 * 4 3 2 37 37 H 1.09004 * 109.46951 * 59.99958 * 5 4 3 38 38 H 1.09004 * 109.47312 * 300.00638 * 5 4 3 39 39 H 1.08999 * 109.47098 * 60.00844 * 6 5 4 40 40 H 1.08994 * 109.47498 * 299.99955 * 6 5 4 41 41 H 1.09001 * 109.46991 * 60.00667 * 7 6 5 42 42 H 1.08997 * 109.47644 * 300.00223 * 7 6 5 43 43 H 1.08992 * 109.46979 * 60.00073 * 8 7 6 44 44 H 1.09003 * 109.46474 * 300.00064 * 8 7 6 45 45 H 0.96708 * 113.99682 * 300.00381 * 11 9 8 46 46 H 1.08992 * 109.46912 * 64.99893 * 12 9 8 47 47 H 1.08996 * 109.46630 * 304.99655 * 12 9 8 48 48 H 0.97000 * 120.00274 * 0.02562 * 13 12 9 49 49 H 1.07999 * 119.98607 * 359.97020 * 15 14 13 50 50 H 1.08009 * 119.68622 * 179.72006 * 16 15 14 51 51 H 1.08003 * 119.69997 * 180.28200 * 17 16 15 52 52 H 1.07997 * 120.02691 * 179.74494 * 18 17 16 53 53 H 0.97000 * 120.00208 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8851 0.0013 6 6 5.6099 2.8851 0.0013 7 6 6.1198 4.3277 0.0013 8 6 7.6499 4.3277 0.0006 9 6 8.1598 5.7702 0.0013 10 1 7.7255 6.3088 0.8435 11 8 7.7813 6.4098 -1.2192 12 6 9.6847 5.7720 0.1264 13 7 10.1631 7.1514 0.2470 14 6 11.5209 7.4060 0.3738 15 6 12.4312 6.3590 0.3866 16 6 13.7818 6.6186 0.5184 17 6 14.2440 7.9239 0.6275 18 6 13.3715 8.9728 0.6178 19 6 11.9900 8.7364 0.4906 20 6 11.0814 9.8150 0.4792 21 1 10.1299 9.7144 -0.0218 22 6 11.4126 11.0156 1.1171 23 7 12.3986 11.0494 1.9771 24 14 10.4476 12.5702 0.7412 25 1 9.2993 12.6784 1.6766 26 1 11.3311 13.7527 0.9030 27 1 9.9449 12.5154 -0.6552 28 1 -0.3634 0.5137 0.8900 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 1.6766 1.9563 0.8901 34 1 1.6765 1.9564 -0.8899 35 1 3.9335 0.9287 -0.8892 36 1 3.9330 0.9289 0.8908 37 1 3.7162 3.3987 0.8913 38 1 3.7169 3.3993 -0.8887 39 1 5.9732 2.3718 -0.8890 40 1 5.9732 2.3709 0.8910 41 1 5.7565 4.8414 0.8914 42 1 5.7565 4.8415 -0.8886 43 1 8.0128 3.8141 -0.8895 44 1 8.0135 3.8137 0.8905 45 1 8.1331 5.9830 -2.0125 46 1 10.1224 5.3118 -0.7594 47 1 9.9772 5.2073 1.0115 48 1 9.5304 7.8867 0.2389 49 1 12.0835 5.3403 0.2981 50 1 14.4852 5.7991 0.5323 51 1 15.3034 8.1100 0.7253 52 1 13.7407 9.9838 0.7074 53 1 12.6284 11.8817 2.4190 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252130943.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:23 Heat of formation + Delta-G solvation = -98.098934 kcal Electronic energy + Delta-G solvation = -25595.779139 eV Core-core repulsion = 22043.127146 eV Total energy + Delta-G solvation = -3552.651993 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.98383 -38.97716 -37.61912 -35.79417 -35.48038 -35.25768 -33.03054 -31.61667 -30.83241 -29.43157 -27.68759 -26.74700 -25.17011 -23.38918 -22.45564 -22.18172 -21.77976 -21.62708 -21.35456 -19.07858 -17.96189 -17.35726 -17.21283 -16.78937 -16.64385 -16.13667 -15.82057 -15.58222 -15.20984 -14.78735 -14.67631 -14.51021 -14.33400 -14.14700 -14.09415 -13.91475 -13.57203 -13.35256 -13.18309 -12.98656 -12.84791 -12.71703 -12.62319 -12.49653 -12.28129 -12.12558 -12.07034 -11.77525 -11.68234 -11.64733 -11.44809 -11.39011 -11.33262 -11.28846 -11.23324 -10.97348 -10.67128 -10.53943 -9.23026 -8.55368 -8.00582 -6.04097 1.06023 1.35243 1.38909 1.49879 1.55121 2.25312 2.84103 2.93776 3.56677 3.64834 3.85817 3.91259 3.98637 4.07113 4.09545 4.19531 4.23667 4.35651 4.41767 4.46426 4.52194 4.63663 4.67356 4.70393 4.74411 4.79923 4.85075 4.86138 4.86914 4.96551 4.99206 5.07678 5.10730 5.17067 5.18730 5.19387 5.24778 5.27859 5.35717 5.38508 5.41728 5.48504 5.49700 5.55280 5.58091 5.67376 5.90454 6.00126 6.31863 6.39983 6.63607 6.84161 6.91952 7.04589 7.26557 7.34407 8.48317 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.017310 B = 0.001843 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.157743 B =15188.938623 C =16500.437983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.117 4.117 5 C -0.119 4.119 6 C -0.114 4.114 7 C -0.111 4.111 8 C -0.137 4.137 9 C 0.106 3.894 10 H 0.088 0.912 11 O -0.571 6.571 12 C 0.105 3.895 13 N -0.744 5.744 14 C 0.112 3.888 15 C -0.187 4.187 16 C -0.190 4.190 17 C -0.163 4.163 18 C -0.163 4.163 19 C 0.028 3.972 20 C -0.492 4.492 21 H 0.070 0.930 22 C 0.032 3.968 23 N -0.839 5.839 24 Si 0.974 3.026 25 H -0.266 1.266 26 H -0.271 1.271 27 H -0.263 1.263 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.385 0.615 46 H 0.056 0.944 47 H 0.055 0.945 48 H 0.392 0.608 49 H 0.116 0.884 50 H 0.116 0.884 51 H 0.100 0.900 52 H 0.095 0.905 53 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.177 -18.452 -4.048 26.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.155 4.155 5 C -0.157 4.157 6 C -0.152 4.152 7 C -0.149 4.149 8 C -0.175 4.175 9 C 0.047 3.953 10 H 0.106 0.894 11 O -0.378 6.378 12 C -0.020 4.020 13 N -0.377 5.377 14 C 0.010 3.990 15 C -0.211 4.211 16 C -0.210 4.210 17 C -0.183 4.183 18 C -0.184 4.184 19 C 0.023 3.977 20 C -0.523 4.523 21 H 0.088 0.912 22 C -0.180 4.180 23 N -0.467 5.467 24 Si 0.796 3.204 25 H -0.191 1.191 26 H -0.196 1.196 27 H -0.187 1.187 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.234 0.766 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.227 0.773 49 H 0.134 0.866 50 H 0.134 0.866 51 H 0.118 0.882 52 H 0.113 0.887 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.396 -18.111 -3.490 26.050 hybrid contribution 0.123 0.928 -0.167 0.951 sum -18.273 -17.183 -3.657 25.348 Atomic orbital electron populations 1.21792 0.95709 1.01867 1.01803 1.21546 0.96072 0.96710 1.02021 1.21627 0.95423 0.96930 1.01836 1.21587 0.95344 0.96491 1.02061 1.21589 0.95363 0.96970 1.01754 1.21564 0.95362 0.96035 1.02238 1.21473 0.94284 0.97188 1.01945 1.22144 0.96682 0.94805 1.03905 1.22065 0.91286 0.94437 0.87530 0.89445 1.86571 1.76714 1.58288 1.16253 1.21962 0.95205 0.84091 1.00763 1.44009 1.03432 1.06758 1.83522 1.18180 0.84749 0.93014 1.03019 1.20347 0.93071 0.96559 1.11082 1.20541 0.95018 0.95650 1.09782 1.20502 0.98115 0.93590 1.06048 1.20774 0.93117 0.97782 1.06731 1.17591 0.93120 0.91055 0.95925 1.19332 1.03177 0.97626 1.32146 0.91202 1.26561 0.95969 1.02975 0.92479 1.69918 1.27522 1.28957 1.20350 0.85332 0.78542 0.76958 0.79580 1.19055 1.19563 1.18662 0.92823 0.92771 0.92367 0.91989 0.92064 0.92343 0.92240 0.91917 0.92043 0.92486 0.92342 0.91645 0.91876 0.92807 0.92084 0.90151 0.90229 0.76607 0.92549 0.92649 0.77290 0.86636 0.86609 0.88203 0.88703 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 71.98 0.71 -0.78 16 2 C -0.13 -1.32 5.93 30.59 0.18 -1.14 16 3 C -0.12 -1.39 5.21 30.59 0.16 -1.23 16 4 C -0.12 -1.40 5.21 30.59 0.16 -1.24 16 5 C -0.12 -1.61 5.21 30.59 0.16 -1.45 16 6 C -0.11 -1.59 5.21 30.59 0.16 -1.43 16 7 C -0.11 -1.88 5.11 30.60 0.16 -1.72 16 8 C -0.14 -2.39 4.89 30.59 0.15 -2.24 16 9 C 0.11 2.57 3.00 30.59 0.09 2.66 16 10 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 11 O -0.57 -14.73 12.82 -148.98 -1.91 -16.64 16 12 C 0.10 3.10 4.54 86.38 0.39 3.49 16 13 N -0.74 -30.31 5.58 -338.06 -1.89 -32.19 16 14 C 0.11 5.41 6.68 38.99 0.26 5.68 16 15 C -0.19 -8.29 9.30 22.37 0.21 -8.08 16 16 C -0.19 -8.49 10.03 22.41 0.22 -8.26 16 17 C -0.16 -7.97 9.96 22.01 0.22 -7.75 16 18 C -0.16 -9.02 8.62 22.46 0.19 -8.82 16 19 C 0.03 1.52 5.57 -21.17 -0.12 1.41 16 20 C -0.49 -27.00 8.49 23.37 0.20 -26.80 16 21 H 0.07 3.70 6.72 -2.91 -0.02 3.68 16 22 C 0.03 1.70 5.16 85.24 0.44 2.14 16 23 N -0.84 -46.19 10.97 21.83 0.24 -45.95 16 24 Si 0.97 40.39 29.59 68.60 2.03 42.42 16 25 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 26 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 27 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 28 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 38 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.06 1.13 7.82 -2.39 -0.02 1.11 16 43 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.38 7.42 9.05 -74.05 -0.67 6.75 16 46 H 0.06 1.57 7.94 -2.39 -0.02 1.56 16 47 H 0.06 1.62 7.94 -2.39 -0.02 1.60 16 48 H 0.39 16.82 6.72 -92.71 -0.62 16.20 16 49 H 0.12 4.34 6.73 -2.91 -0.02 4.32 16 50 H 0.12 4.37 8.06 -2.91 -0.02 4.34 16 51 H 0.10 4.40 8.06 -2.91 -0.02 4.37 16 52 H 0.09 5.53 6.22 -2.91 -0.02 5.51 16 53 H 0.28 14.15 8.30 -92.71 -0.77 13.38 16 Total: -1.00 -62.60 420.32 1.99 -60.61 By element: Atomic # 1 Polarization: 47.75 SS G_CDS: -0.43 Total: 47.32 kcal Atomic # 6 Polarization: -59.52 SS G_CDS: 3.95 Total: -55.57 kcal Atomic # 7 Polarization: -76.50 SS G_CDS: -1.65 Total: -78.14 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -1.91 Total: -16.64 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.42 kcal Total: -62.60 1.99 -60.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252130943.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.490 kcal (2) G-P(sol) polarization free energy of solvation -62.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds