Wall clock time and date at job start Tue Mar 31 2020 12:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47026 * 2 1 4 4 C 1.52999 * 109.46785 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47091 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47091 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.46785 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.46785 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.46785 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.46938 * 304.99197 * 9 8 7 11 11 O 1.42895 * 109.47484 * 65.00234 * 9 8 7 12 12 C 1.53009 * 109.46971 * 184.99610 * 9 8 7 13 13 N 1.46500 * 109.47103 * 179.97438 * 12 9 8 14 14 C 1.39684 * 119.99819 * 179.97438 * 13 12 9 15 15 C 1.39334 * 119.95268 * 359.73250 * 14 13 12 16 16 C 1.38475 * 120.42232 * 179.72121 * 15 14 13 17 17 C 1.37689 * 120.32702 * 0.54721 * 16 15 14 18 18 C 1.40742 * 119.88803 * 359.73359 * 17 16 15 19 19 C 1.41420 * 120.20508 * 180.02562 * 18 17 16 20 20 H 1.07997 * 119.99477 * 24.41152 * 19 18 17 21 21 C 1.39928 * 120.00003 * 204.40810 * 19 18 17 22 22 N 1.30833 * 120.00136 * 17.87954 * 21 19 18 23 23 Si 1.86793 * 120.00104 * 197.87431 * 21 19 18 24 24 H 1.48504 * 109.47060 * 90.00171 * 23 21 19 25 25 H 1.48502 * 109.47526 * 210.00225 * 23 21 19 26 26 H 1.48503 * 109.47184 * 330.00335 * 23 21 19 27 27 C 1.38276 * 119.95055 * 180.02562 * 14 13 12 28 28 H 1.08997 * 109.47162 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47229 * 300.00514 * 1 2 3 30 30 H 1.09007 * 109.46680 * 60.00193 * 1 2 3 31 31 H 1.08994 * 109.47229 * 239.99486 * 2 1 3 32 32 H 1.08998 * 109.46474 * 119.99672 * 2 1 3 33 33 H 1.08995 * 109.47037 * 59.99516 * 3 2 1 34 34 H 1.08995 * 109.46802 * 299.99507 * 3 2 1 35 35 H 1.08994 * 109.47270 * 59.99609 * 4 3 2 36 36 H 1.09007 * 109.46880 * 299.99782 * 4 3 2 37 37 H 1.08995 * 109.47044 * 59.99423 * 5 4 3 38 38 H 1.09004 * 109.46498 * 299.99858 * 5 4 3 39 39 H 1.08995 * 109.47648 * 59.99793 * 6 5 4 40 40 H 1.08995 * 109.47128 * 299.99210 * 6 5 4 41 41 H 1.08994 * 109.47536 * 59.99772 * 7 6 5 42 42 H 1.09007 * 109.47233 * 299.99566 * 7 6 5 43 43 H 1.08995 * 109.47648 * 59.99987 * 8 7 6 44 44 H 1.09004 * 109.47334 * 299.99541 * 8 7 6 45 45 H 0.96693 * 114.00562 * 59.99290 * 11 9 8 46 46 H 1.08994 * 109.47148 * 300.00065 * 12 9 8 47 47 H 1.09001 * 109.46734 * 59.99794 * 12 9 8 48 48 H 0.96995 * 119.99603 * 0.02562 * 13 12 9 49 49 H 1.08003 * 119.78866 * 359.97438 * 15 14 13 50 50 H 1.08000 * 119.83715 * 180.27727 * 16 15 14 51 51 H 1.07998 * 120.05505 * 179.74744 * 17 16 15 52 52 H 0.96997 * 120.00181 * 179.97438 * 22 21 19 53 53 H 1.08000 * 120.15897 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0801 2.8850 0.0013 6 6 5.6101 2.8849 0.0026 7 6 6.1201 4.3274 0.0026 8 6 7.6500 4.3274 0.0032 9 6 8.1600 5.7699 0.0039 10 1 7.7259 6.3091 -0.8380 11 8 7.7816 6.4085 1.2249 12 6 9.6850 5.7718 -0.1211 13 7 10.1733 7.1530 -0.1211 14 6 11.5424 7.4097 -0.2254 15 6 12.4432 6.3513 -0.3237 16 6 13.8019 6.5948 -0.4333 17 6 14.2789 7.8864 -0.4350 18 6 13.3814 8.9655 -0.3305 19 6 13.8639 10.2949 -0.3321 20 1 14.8141 10.5238 -0.7915 21 6 13.1102 11.3135 0.2615 22 7 12.1582 11.0145 1.1077 23 14 13.4633 13.1000 -0.1540 24 1 12.6391 13.5094 -1.3195 25 1 13.1294 13.9552 1.0133 26 1 14.9023 13.2559 -0.4862 27 6 12.0022 8.7138 -0.2248 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6768 1.9563 -0.8900 35 1 3.9337 0.9285 -0.8890 36 1 3.9329 0.9288 0.8909 37 1 3.7163 3.3985 0.8912 38 1 3.7171 3.3990 -0.8888 39 1 5.9742 2.3712 -0.8871 40 1 5.9726 2.3711 0.8928 41 1 5.7560 4.8416 0.8920 42 1 5.7575 4.8410 -0.8879 43 1 8.0138 3.8134 -0.8865 44 1 8.0130 3.8137 0.8935 45 1 8.1333 5.9811 2.0178 46 1 10.1192 5.2325 0.7207 47 1 9.9738 5.2846 -1.0525 48 1 9.5459 7.8891 -0.0480 49 1 12.0790 5.3345 -0.3186 50 1 14.4913 5.7673 -0.5135 51 1 15.3398 8.0711 -0.5166 52 1 11.6360 11.7206 1.5195 53 1 11.3053 9.5348 -0.1442 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252131417.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:31 Heat of formation + Delta-G solvation = -87.344996 kcal Electronic energy + Delta-G solvation = -25263.518033 eV Core-core repulsion = 21711.332365 eV Total energy + Delta-G solvation = -3552.185667 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -38.59543 -37.51248 -36.98111 -35.00178 -34.41251 -33.13062 -32.33308 -30.02398 -29.39052 -28.28190 -26.26795 -25.17254 -24.19316 -22.24001 -21.63147 -21.24910 -21.00677 -20.63341 -19.77935 -17.16186 -16.63052 -16.45587 -16.04374 -15.67881 -15.17222 -14.82540 -14.70457 -14.39782 -14.16571 -14.00635 -13.91411 -13.57327 -13.04246 -13.00984 -12.69233 -12.60266 -12.49532 -12.25295 -12.09212 -11.90218 -11.72480 -11.55052 -11.48004 -11.20640 -11.13803 -11.09338 -10.99467 -10.86505 -10.80950 -10.73651 -10.68068 -10.52338 -10.35763 -9.85218 -9.53603 -9.40702 -9.20496 -8.72417 -7.27340 -6.68396 -6.11461 -4.27139 2.90515 3.12991 3.16543 3.26759 3.37984 4.01206 4.04070 4.31155 4.48712 4.55088 4.63905 4.69625 4.73310 4.77178 4.84550 4.90220 5.03070 5.07092 5.12579 5.30929 5.32280 5.36308 5.36693 5.50439 5.52652 5.58923 5.62526 5.70975 5.73115 5.76117 5.78852 5.85647 5.89116 5.92669 5.94639 6.02364 6.08922 6.20251 6.25519 6.30196 6.60617 6.91684 7.14981 7.18210 7.42478 7.49249 7.67221 7.86279 8.00111 8.14876 8.22007 8.53512 8.78108 8.88670 9.05722 9.16625 10.30229 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.026014 B = 0.001581 C = 0.001507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.105803 B =17706.456346 C =18570.511263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.121 4.121 5 C -0.120 4.120 6 C -0.120 4.120 7 C -0.115 4.115 8 C -0.148 4.148 9 C 0.096 3.904 10 H 0.099 0.901 11 O -0.556 6.556 12 C 0.107 3.893 13 N -0.755 5.755 14 C 0.215 3.785 15 C -0.301 4.301 16 C -0.066 4.066 17 C -0.258 4.258 18 C 0.139 3.861 19 C -0.465 4.465 20 H 0.076 0.924 21 C 0.078 3.922 22 N -0.791 5.791 23 Si 0.904 3.096 24 H -0.269 1.269 25 H -0.279 1.279 26 H -0.263 1.263 27 C -0.230 4.230 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.374 0.626 46 H 0.049 0.951 47 H 0.054 0.946 48 H 0.394 0.606 49 H 0.083 0.917 50 H 0.085 0.915 51 H 0.088 0.912 52 H 0.277 0.723 53 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.177 -16.844 -0.849 25.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.159 4.159 4 C -0.158 4.158 5 C -0.158 4.158 6 C -0.157 4.157 7 C -0.153 4.153 8 C -0.186 4.186 9 C 0.037 3.963 10 H 0.117 0.883 11 O -0.362 6.362 12 C -0.019 4.019 13 N -0.390 5.390 14 C 0.116 3.884 15 C -0.324 4.324 16 C -0.085 4.085 17 C -0.279 4.279 18 C 0.135 3.865 19 C -0.495 4.495 20 H 0.094 0.906 21 C -0.140 4.140 22 N -0.417 5.417 23 Si 0.729 3.271 24 H -0.194 1.194 25 H -0.205 1.205 26 H -0.187 1.187 27 C -0.254 4.254 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.221 0.779 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.228 0.772 49 H 0.101 0.899 50 H 0.103 0.897 51 H 0.106 0.894 52 H 0.088 0.912 53 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -19.649 -16.537 -1.102 25.706 hybrid contribution 0.257 0.595 0.288 0.709 sum -19.392 -15.942 -0.815 25.117 Atomic orbital electron populations 1.21785 0.95986 1.01525 1.01805 1.21547 0.95795 0.97077 1.01934 1.21639 0.95593 0.96618 1.02046 1.21622 0.95202 0.97045 1.01963 1.21609 0.95568 0.96540 1.02081 1.21616 0.95209 0.97028 1.01896 1.21522 0.94677 0.96425 1.02631 1.22234 0.96482 0.96958 1.02953 1.22180 0.93299 0.92822 0.88013 0.88267 1.86571 1.76573 1.57458 1.15553 1.21719 0.93124 0.86351 1.00738 1.44296 1.04853 1.04934 1.84877 1.17668 0.82014 0.94055 0.94639 1.19862 0.93169 0.95267 1.24130 1.20273 0.93988 0.95561 0.98707 1.20854 0.97497 0.92433 1.17066 1.17328 0.90702 0.92355 0.86075 1.19560 1.05132 0.91926 1.32924 0.90594 1.25874 0.93924 1.01361 0.92806 1.69868 1.17259 1.35122 1.19435 0.86386 0.79956 0.81923 0.78832 1.19413 1.20455 1.18697 1.20724 0.96175 0.92784 1.15755 0.92867 0.92774 0.92788 0.92127 0.92124 0.92068 0.92077 0.92114 0.92114 0.92034 0.92085 0.92169 0.92143 0.91311 0.92103 0.90926 0.91494 0.77881 0.93320 0.92775 0.77241 0.89850 0.89714 0.89423 0.91174 0.86530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.43 16 2 C -0.13 -0.71 5.93 -26.73 -0.16 -0.86 16 3 C -0.12 -0.73 5.21 -26.73 -0.14 -0.87 16 4 C -0.12 -0.77 5.21 -26.73 -0.14 -0.91 16 5 C -0.12 -0.85 5.21 -26.73 -0.14 -0.99 16 6 C -0.12 -0.90 5.21 -26.73 -0.14 -1.04 16 7 C -0.11 -1.00 5.11 -26.73 -0.14 -1.14 16 8 C -0.15 -1.38 4.89 -26.73 -0.13 -1.51 16 9 C 0.10 1.15 3.05 -26.72 -0.08 1.07 16 10 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 11 O -0.56 -7.23 12.62 -35.23 -0.44 -7.67 16 12 C 0.11 1.61 4.57 -4.04 -0.02 1.59 16 13 N -0.76 -14.71 5.62 -58.68 -0.33 -15.04 16 14 C 0.22 5.13 6.64 -83.86 -0.56 4.57 16 15 C -0.30 -6.97 9.32 -39.09 -0.36 -7.34 16 16 C -0.07 -1.56 10.01 -39.69 -0.40 -1.96 16 17 C -0.26 -6.64 9.79 -38.84 -0.38 -7.02 16 18 C 0.14 3.84 5.57 -106.85 -0.60 3.24 16 19 C -0.47 -12.79 9.05 -37.74 -0.34 -13.13 16 20 H 0.08 2.01 7.91 -52.49 -0.42 1.60 16 21 C 0.08 2.02 5.14 -17.34 -0.09 1.93 16 22 N -0.79 -21.07 10.95 55.55 0.61 -20.46 16 23 Si 0.90 19.22 29.59 -169.99 -5.03 14.19 16 24 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 25 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 26 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 27 C -0.23 -6.16 8.53 -38.68 -0.33 -6.49 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.66 7.82 -51.93 -0.41 0.25 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.37 3.90 9.04 45.56 0.41 4.31 16 46 H 0.05 0.74 7.93 -51.93 -0.41 0.33 16 47 H 0.05 0.81 7.95 -51.93 -0.41 0.40 16 48 H 0.39 7.64 8.35 -40.82 -0.34 7.30 16 49 H 0.08 1.73 6.70 -52.48 -0.35 1.37 16 50 H 0.08 1.74 8.06 -52.49 -0.42 1.31 16 51 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 52 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 53 H 0.12 3.23 6.16 -52.49 -0.32 2.91 16 LS Contribution 423.20 15.07 6.38 6.38 Total: -1.00 -29.13 423.20 -12.01 -41.13 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: -9.42 Total: 12.76 kcal Atomic # 6 Polarization: -27.53 SS G_CDS: -3.77 Total: -31.30 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.28 Total: -35.49 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.44 Total: -7.67 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -29.13 -12.01 -41.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252131417.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.212 kcal (2) G-P(sol) polarization free energy of solvation -29.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds