Wall clock time and date at job start Tue Mar 31 2020 12:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47026 * 2 1 4 4 C 1.52999 * 109.46785 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47091 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47091 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.46785 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.46785 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.46785 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.46938 * 304.99197 * 9 8 7 11 11 O 1.42895 * 109.47484 * 65.00234 * 9 8 7 12 12 C 1.53009 * 109.46971 * 184.99610 * 9 8 7 13 13 N 1.46500 * 109.47103 * 179.97438 * 12 9 8 14 14 C 1.39684 * 119.99819 * 179.97438 * 13 12 9 15 15 C 1.39334 * 119.95268 * 359.73250 * 14 13 12 16 16 C 1.38475 * 120.42232 * 179.72121 * 15 14 13 17 17 C 1.37689 * 120.32702 * 0.54721 * 16 15 14 18 18 C 1.40742 * 119.88803 * 359.73359 * 17 16 15 19 19 C 1.41420 * 120.20508 * 180.02562 * 18 17 16 20 20 H 1.07997 * 119.99477 * 24.41152 * 19 18 17 21 21 C 1.39928 * 120.00003 * 204.40810 * 19 18 17 22 22 N 1.30833 * 120.00136 * 17.87954 * 21 19 18 23 23 Si 1.86793 * 120.00104 * 197.87431 * 21 19 18 24 24 H 1.48504 * 109.47060 * 90.00171 * 23 21 19 25 25 H 1.48502 * 109.47526 * 210.00225 * 23 21 19 26 26 H 1.48503 * 109.47184 * 330.00335 * 23 21 19 27 27 C 1.38276 * 119.95055 * 180.02562 * 14 13 12 28 28 H 1.08997 * 109.47162 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47229 * 300.00514 * 1 2 3 30 30 H 1.09007 * 109.46680 * 60.00193 * 1 2 3 31 31 H 1.08994 * 109.47229 * 239.99486 * 2 1 3 32 32 H 1.08998 * 109.46474 * 119.99672 * 2 1 3 33 33 H 1.08995 * 109.47037 * 59.99516 * 3 2 1 34 34 H 1.08995 * 109.46802 * 299.99507 * 3 2 1 35 35 H 1.08994 * 109.47270 * 59.99609 * 4 3 2 36 36 H 1.09007 * 109.46880 * 299.99782 * 4 3 2 37 37 H 1.08995 * 109.47044 * 59.99423 * 5 4 3 38 38 H 1.09004 * 109.46498 * 299.99858 * 5 4 3 39 39 H 1.08995 * 109.47648 * 59.99793 * 6 5 4 40 40 H 1.08995 * 109.47128 * 299.99210 * 6 5 4 41 41 H 1.08994 * 109.47536 * 59.99772 * 7 6 5 42 42 H 1.09007 * 109.47233 * 299.99566 * 7 6 5 43 43 H 1.08995 * 109.47648 * 59.99987 * 8 7 6 44 44 H 1.09004 * 109.47334 * 299.99541 * 8 7 6 45 45 H 0.96693 * 114.00562 * 59.99290 * 11 9 8 46 46 H 1.08994 * 109.47148 * 300.00065 * 12 9 8 47 47 H 1.09001 * 109.46734 * 59.99794 * 12 9 8 48 48 H 0.96995 * 119.99603 * 0.02562 * 13 12 9 49 49 H 1.08003 * 119.78866 * 359.97438 * 15 14 13 50 50 H 1.08000 * 119.83715 * 180.27727 * 16 15 14 51 51 H 1.07998 * 120.05505 * 179.74744 * 17 16 15 52 52 H 0.96997 * 120.00181 * 179.97438 * 22 21 19 53 53 H 1.08000 * 120.15897 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0801 2.8850 0.0013 6 6 5.6101 2.8849 0.0026 7 6 6.1201 4.3274 0.0026 8 6 7.6500 4.3274 0.0032 9 6 8.1600 5.7699 0.0039 10 1 7.7259 6.3091 -0.8380 11 8 7.7816 6.4085 1.2249 12 6 9.6850 5.7718 -0.1211 13 7 10.1733 7.1530 -0.1211 14 6 11.5424 7.4097 -0.2254 15 6 12.4432 6.3513 -0.3237 16 6 13.8019 6.5948 -0.4333 17 6 14.2789 7.8864 -0.4350 18 6 13.3814 8.9655 -0.3305 19 6 13.8639 10.2949 -0.3321 20 1 14.8141 10.5238 -0.7915 21 6 13.1102 11.3135 0.2615 22 7 12.1582 11.0145 1.1077 23 14 13.4633 13.1000 -0.1540 24 1 12.6391 13.5094 -1.3195 25 1 13.1294 13.9552 1.0133 26 1 14.9023 13.2559 -0.4862 27 6 12.0022 8.7138 -0.2248 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6768 1.9563 -0.8900 35 1 3.9337 0.9285 -0.8890 36 1 3.9329 0.9288 0.8909 37 1 3.7163 3.3985 0.8912 38 1 3.7171 3.3990 -0.8888 39 1 5.9742 2.3712 -0.8871 40 1 5.9726 2.3711 0.8928 41 1 5.7560 4.8416 0.8920 42 1 5.7575 4.8410 -0.8879 43 1 8.0138 3.8134 -0.8865 44 1 8.0130 3.8137 0.8935 45 1 8.1333 5.9811 2.0178 46 1 10.1192 5.2325 0.7207 47 1 9.9738 5.2846 -1.0525 48 1 9.5459 7.8891 -0.0480 49 1 12.0790 5.3345 -0.3186 50 1 14.4913 5.7673 -0.5135 51 1 15.3398 8.0711 -0.5166 52 1 11.6360 11.7206 1.5195 53 1 11.3053 9.5348 -0.1442 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252131417.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:30 Heat of formation + Delta-G solvation = -101.896790 kcal Electronic energy + Delta-G solvation = -25264.149046 eV Core-core repulsion = 21711.332365 eV Total energy + Delta-G solvation = -3552.816680 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.91354 -38.96641 -37.63542 -36.19632 -35.53244 -34.92642 -33.04182 -31.34264 -31.14718 -29.41105 -27.36662 -27.12048 -25.09319 -23.35358 -22.60775 -22.20399 -21.78607 -21.66082 -21.42213 -19.06066 -17.87113 -17.32875 -17.15436 -16.77981 -16.49103 -16.41716 -15.85870 -15.68689 -15.16529 -14.79650 -14.68520 -14.60452 -14.40134 -14.18045 -14.10280 -13.92925 -13.59053 -13.35962 -13.21128 -12.87552 -12.84805 -12.73570 -12.55799 -12.45244 -12.28753 -12.11591 -12.05763 -11.77483 -11.68845 -11.65049 -11.55979 -11.40066 -11.34684 -11.30143 -11.28698 -11.07878 -10.69513 -10.49608 -9.25341 -8.61681 -7.89784 -6.32103 1.08594 1.33597 1.38193 1.51390 1.58617 2.23006 2.74287 2.83037 3.53376 3.62689 3.86131 3.89433 3.97742 4.04558 4.08439 4.18525 4.22347 4.34589 4.40723 4.45472 4.52017 4.62643 4.68508 4.70750 4.78321 4.80375 4.84829 4.86079 4.95539 4.98423 5.00137 5.06699 5.09874 5.16646 5.18961 5.20184 5.23896 5.27277 5.30880 5.38029 5.41056 5.45295 5.49207 5.54740 5.57574 5.60266 5.96349 6.10945 6.21887 6.26729 6.58436 6.79256 6.94574 7.06149 7.07775 7.25032 8.38609 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.026014 B = 0.001581 C = 0.001507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.105803 B =17706.456346 C =18570.511263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.118 4.118 5 C -0.119 4.119 6 C -0.115 4.115 7 C -0.111 4.111 8 C -0.139 4.139 9 C 0.106 3.894 10 H 0.094 0.906 11 O -0.572 6.572 12 C 0.104 3.896 13 N -0.751 5.751 14 C 0.218 3.782 15 C -0.302 4.302 16 C -0.062 4.062 17 C -0.286 4.286 18 C 0.108 3.892 19 C -0.505 4.505 20 H 0.072 0.928 21 C 0.037 3.963 22 N -0.822 5.822 23 Si 0.980 3.020 24 H -0.264 1.264 25 H -0.268 1.268 26 H -0.258 1.258 27 C -0.260 4.260 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.385 0.615 46 H 0.054 0.946 47 H 0.061 0.939 48 H 0.392 0.608 49 H 0.114 0.886 50 H 0.119 0.881 51 H 0.090 0.910 52 H 0.285 0.715 53 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.976 -18.193 -0.988 27.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.155 4.155 5 C -0.157 4.157 6 C -0.153 4.153 7 C -0.149 4.149 8 C -0.177 4.177 9 C 0.047 3.953 10 H 0.112 0.888 11 O -0.379 6.379 12 C -0.021 4.021 13 N -0.383 5.383 14 C 0.116 3.884 15 C -0.325 4.325 16 C -0.081 4.081 17 C -0.306 4.306 18 C 0.105 3.895 19 C -0.534 4.534 20 H 0.090 0.910 21 C -0.178 4.178 22 N -0.448 5.448 23 Si 0.801 3.199 24 H -0.188 1.188 25 H -0.192 1.192 26 H -0.182 1.182 27 C -0.285 4.285 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.234 0.766 46 H 0.073 0.927 47 H 0.079 0.921 48 H 0.225 0.775 49 H 0.132 0.868 50 H 0.137 0.863 51 H 0.108 0.892 52 H 0.095 0.905 53 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -20.475 -17.928 -1.233 27.243 hybrid contribution 0.442 0.882 0.352 1.047 sum -20.034 -17.046 -0.881 26.319 Atomic orbital electron populations 1.21792 0.95710 1.01858 1.01806 1.21546 0.96069 0.96729 1.02002 1.21624 0.95413 0.96913 1.01845 1.21589 0.95353 0.96533 1.02041 1.21586 0.95350 0.96942 1.01779 1.21568 0.95373 0.96112 1.02215 1.21468 0.94232 0.97147 1.02005 1.22154 0.96710 0.94898 1.03906 1.22101 0.91056 0.94535 0.87608 0.88844 1.86553 1.76722 1.58294 1.16333 1.21989 0.95200 0.83689 1.01212 1.44437 1.03227 1.07020 1.83633 1.17810 0.84153 0.93320 0.93088 1.20218 0.92951 0.96408 1.22955 1.20658 0.94976 0.95641 0.96817 1.21023 0.97556 0.93255 1.18798 1.17725 0.91681 0.93296 0.86822 1.19816 1.05895 0.93088 1.34642 0.91002 1.26722 0.93383 1.05709 0.91985 1.69930 1.18062 1.36824 1.20011 0.85251 0.79892 0.75951 0.78853 1.18841 1.19220 1.18212 1.20647 0.95741 0.93679 1.18399 0.92392 0.92793 0.92786 0.92039 0.92062 0.92295 0.92257 0.91985 0.92034 0.92417 0.92338 0.91774 0.91834 0.92209 0.92515 0.89985 0.90487 0.76631 0.92744 0.92055 0.77471 0.86808 0.86259 0.89184 0.90496 0.88526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 71.98 0.71 -0.72 16 2 C -0.13 -1.27 5.93 30.60 0.18 -1.08 16 3 C -0.12 -1.32 5.21 30.59 0.16 -1.16 16 4 C -0.12 -1.34 5.21 30.59 0.16 -1.18 16 5 C -0.12 -1.51 5.21 30.59 0.16 -1.35 16 6 C -0.12 -1.50 5.21 30.59 0.16 -1.35 16 7 C -0.11 -1.73 5.11 30.59 0.16 -1.58 16 8 C -0.14 -2.23 4.89 30.59 0.15 -2.08 16 9 C 0.11 2.36 3.05 30.60 0.09 2.45 16 10 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 11 O -0.57 -14.10 12.62 -148.98 -1.88 -15.98 16 12 C 0.10 2.90 4.57 86.38 0.39 3.29 16 13 N -0.75 -28.70 5.62 -339.57 -1.91 -30.61 16 14 C 0.22 10.33 6.64 38.16 0.25 10.58 16 15 C -0.30 -13.46 9.32 22.59 0.21 -13.25 16 16 C -0.06 -2.85 10.01 22.20 0.22 -2.63 16 17 C -0.29 -14.92 9.79 22.75 0.22 -14.70 16 18 C 0.11 6.17 5.57 -21.31 -0.12 6.05 16 19 C -0.50 -28.76 9.05 23.46 0.21 -28.55 16 20 H 0.07 3.97 7.91 -2.91 -0.02 3.95 16 21 C 0.04 1.94 5.14 85.25 0.44 2.38 16 22 N -0.82 -44.99 10.95 21.82 0.24 -44.75 16 23 Si 0.98 39.99 29.59 68.60 2.03 42.02 16 24 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 25 H -0.27 -10.32 7.11 99.48 0.71 -9.62 16 26 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 27 C -0.26 -14.34 8.53 22.85 0.20 -14.15 16 28 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.05 0.49 8.14 -2.38 -0.02 0.48 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 37 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 40 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.06 1.05 7.82 -2.39 -0.02 1.03 16 42 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 43 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 45 H 0.38 7.42 9.04 -74.06 -0.67 6.75 16 46 H 0.05 1.50 7.93 -2.39 -0.02 1.48 16 47 H 0.06 1.67 7.95 -2.39 -0.02 1.65 16 48 H 0.39 15.23 8.35 -92.71 -0.77 14.46 16 49 H 0.11 4.32 6.70 -2.91 -0.02 4.30 16 50 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 51 H 0.09 4.49 8.06 -2.91 -0.02 4.47 16 52 H 0.28 14.11 8.30 -92.71 -0.77 13.34 16 53 H 0.10 5.61 6.16 -2.91 -0.02 5.59 16 Total: -1.00 -63.85 423.20 1.86 -61.99 By element: Atomic # 1 Polarization: 46.93 SS G_CDS: -0.59 Total: 46.35 kcal Atomic # 6 Polarization: -62.97 SS G_CDS: 3.96 Total: -59.01 kcal Atomic # 7 Polarization: -73.69 SS G_CDS: -1.67 Total: -75.36 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -1.88 Total: -15.98 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Total: -63.85 1.86 -61.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252131417.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.906 kcal (2) G-P(sol) polarization free energy of solvation -63.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds