Wall clock time and date at job start Tue Mar 31 2020 12:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47061 * 2 1 4 4 H 1.08995 * 109.47182 * 57.17383 * 3 2 1 5 5 C 1.50702 * 109.46955 * 177.16864 * 3 2 1 6 6 H 1.08000 * 120.00150 * 358.25721 * 5 3 2 7 7 C 1.37879 * 120.00251 * 178.25461 * 5 3 2 8 8 N 1.31516 * 119.99594 * 6.92485 * 7 5 3 9 9 Si 1.86799 * 120.00362 * 186.92689 * 7 5 3 10 10 H 1.48494 * 109.46780 * 264.91944 * 9 7 5 11 11 H 1.48502 * 109.47004 * 24.91671 * 9 7 5 12 12 H 1.48494 * 109.47089 * 144.91934 * 9 7 5 13 13 N 1.46905 * 109.47170 * 297.16605 * 3 2 1 14 14 C 1.46899 * 110.99787 * 83.58778 * 13 3 2 15 15 C 1.53005 * 109.47036 * 77.24134 * 14 13 3 16 16 C 1.53001 * 109.46961 * 184.30748 * 15 14 13 17 17 C 1.53002 * 109.47171 * 175.11421 * 16 15 14 18 18 C 1.52994 * 109.47350 * 184.89205 * 17 16 15 19 19 C 1.52992 * 109.47403 * 180.02562 * 18 17 16 20 20 O 1.42905 * 109.47527 * 180.02562 * 19 18 17 21 21 C 1.46892 * 111.00200 * 319.63457 * 13 3 2 22 22 C 1.50701 * 109.47124 * 284.99377 * 21 13 3 23 23 C 1.38237 * 120.00098 * 290.71999 * 22 21 13 24 24 C 1.38227 * 120.00410 * 179.76377 * 23 22 21 25 25 C 1.38243 * 119.99982 * 0.51467 * 24 23 22 26 26 C 1.38242 * 119.99432 * 359.73815 * 25 24 23 27 27 C 1.38233 * 120.00155 * 110.99489 * 22 21 13 28 28 H 1.08993 * 109.47022 * 191.97482 * 1 2 3 29 29 H 1.09000 * 109.46783 * 311.97349 * 1 2 3 30 30 H 1.09005 * 109.46954 * 71.97003 * 1 2 3 31 31 H 1.08999 * 109.47122 * 240.00530 * 2 1 3 32 32 H 1.08997 * 109.47125 * 119.99927 * 2 1 3 33 33 H 0.97002 * 120.00179 * 5.59290 * 8 7 5 34 34 H 1.08998 * 109.47357 * 197.24484 * 14 13 3 35 35 H 1.09003 * 109.47375 * 317.24729 * 14 13 3 36 36 H 1.09004 * 109.47256 * 304.30843 * 15 14 13 37 37 H 1.08996 * 109.46769 * 64.30876 * 15 14 13 38 38 H 1.09008 * 109.47206 * 295.11646 * 16 15 14 39 39 H 1.09002 * 109.47162 * 55.11141 * 16 15 14 40 40 H 1.08999 * 109.46925 * 304.89771 * 17 16 15 41 41 H 1.09001 * 109.46733 * 64.89152 * 17 16 15 42 42 H 1.09004 * 109.47377 * 300.00632 * 18 17 16 43 43 H 1.09005 * 109.47069 * 59.99775 * 18 17 16 44 44 H 1.09004 * 109.47354 * 300.00627 * 19 18 17 45 45 H 1.09000 * 109.47373 * 60.00295 * 19 18 17 46 46 H 0.96700 * 113.99954 * 180.02562 * 20 19 18 47 47 H 1.09003 * 109.47556 * 44.99177 * 21 13 3 48 48 H 1.09000 * 109.47332 * 164.99381 * 21 13 3 49 49 H 1.08001 * 119.99750 * 0.02562 * 23 22 21 50 50 H 1.07993 * 120.00648 * 180.23346 * 24 23 22 51 51 H 1.07991 * 120.00645 * 179.72535 * 25 24 23 52 52 H 1.08002 * 119.99646 * 179.97438 * 26 25 24 53 53 H 1.07999 * 120.00258 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6359 1.9708 0.8635 5 6 3.5454 1.4431 0.0702 6 1 4.0831 0.5090 0.1391 7 6 4.2363 2.6361 0.0463 8 7 3.5822 3.7758 0.0999 9 14 6.1011 2.6335 -0.0621 10 1 6.6763 2.7378 1.3029 11 1 6.5583 1.3712 -0.6968 12 1 6.5510 3.7894 -0.8785 13 7 1.6070 2.1150 -1.2322 14 6 0.2386 2.6317 -1.0970 15 6 0.2584 3.9164 -0.2661 16 6 -1.1759 4.3960 -0.0344 17 6 -1.1636 5.6100 0.8968 18 6 -2.6018 6.0147 1.2261 19 6 -2.5895 7.2290 2.1567 20 8 -3.9329 7.6067 2.4649 21 6 1.7186 1.2168 -2.3892 22 6 3.1675 1.0781 -2.7796 23 6 3.8400 2.1514 -3.3335 24 6 5.1703 2.0257 -3.6870 25 6 5.8255 0.8233 -3.4966 26 6 5.1516 -0.2516 -2.9475 27 6 3.8226 -0.1242 -2.5891 28 1 -0.3633 -1.0052 0.2132 29 1 -0.3633 0.6873 0.7640 30 1 -0.3633 0.3181 -0.9772 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.6220 3.7780 0.2377 34 1 -0.1689 2.8444 -2.0853 35 1 -0.3835 1.8873 -0.6000 36 1 0.7357 3.7208 0.6941 37 1 0.8170 4.6855 -0.7996 38 1 -1.6246 4.6742 -0.9882 39 1 -1.7579 3.5947 0.4209 40 1 -0.6376 5.3565 1.8171 41 1 -0.6561 6.4399 0.4050 42 1 -3.1279 6.2681 0.3057 43 1 -3.1093 5.1848 1.7178 44 1 -2.0634 6.9761 3.0772 45 1 -2.0823 8.0589 1.6646 46 1 -4.0014 8.3721 3.0519 47 1 1.3170 0.2374 -2.1290 48 1 1.1549 1.6301 -3.2257 49 1 3.3270 3.0895 -3.4860 50 1 5.6968 2.8653 -4.1162 51 1 6.8636 0.7237 -3.7769 52 1 5.6633 -1.1910 -2.7991 53 1 3.2960 -0.9642 -2.1608 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255178839.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:46 Heat of formation + Delta-G solvation = -46.685611 kcal Electronic energy + Delta-G solvation = -28517.806301 eV Core-core repulsion = 24967.383757 eV Total energy + Delta-G solvation = -3550.422544 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.64230 -39.00947 -38.22033 -36.41385 -34.34419 -33.43551 -33.14428 -31.52013 -31.13536 -28.93347 -27.90269 -25.76917 -24.95677 -23.41673 -23.09032 -22.49296 -21.95463 -21.55593 -20.56705 -18.66722 -18.21174 -17.44847 -17.09946 -16.96963 -16.27682 -15.93933 -15.77781 -15.61848 -15.20710 -15.10671 -14.99208 -14.48213 -14.19301 -14.00150 -13.95041 -13.59156 -13.46263 -13.31204 -13.12912 -12.90608 -12.82834 -12.57075 -12.44332 -12.33015 -12.05993 -12.01705 -11.95788 -11.86022 -11.72090 -11.66856 -11.52820 -11.42883 -11.27625 -11.05331 -10.89984 -10.40919 -10.17392 -9.47888 -9.20980 -8.53887 -8.06388 -5.84333 0.79663 0.82969 1.53438 1.61320 1.76835 2.73192 3.06645 3.27284 3.50322 3.77837 3.94261 4.07411 4.12689 4.17207 4.22598 4.25402 4.30640 4.36337 4.38405 4.39568 4.46169 4.49362 4.51295 4.58498 4.65036 4.71943 4.75493 4.79559 4.85020 4.89387 4.95880 4.99445 5.03757 5.06231 5.10662 5.11270 5.17182 5.25967 5.32870 5.36677 5.42309 5.45228 5.51128 5.59623 5.60285 5.84692 5.85727 6.08193 6.27458 6.43767 6.50043 6.85542 6.86892 6.96972 7.16237 7.94761 9.30171 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.015613 B = 0.003506 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.996461 B = 7983.301570 C = 8593.731883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.212 3.788 4 H -0.003 1.003 5 C -0.578 4.578 6 H 0.027 0.973 7 C 0.029 3.971 8 N -0.929 5.929 9 Si 1.056 2.944 10 H -0.298 1.298 11 H -0.267 1.267 12 H -0.294 1.294 13 N -0.523 5.523 14 C 0.032 3.968 15 C -0.095 4.095 16 C -0.105 4.105 17 C -0.111 4.111 18 C -0.114 4.114 19 C 0.073 3.927 20 O -0.596 6.596 21 C 0.091 3.909 22 C -0.033 4.033 23 C -0.102 4.102 24 C -0.139 4.139 25 C -0.142 4.142 26 C -0.132 4.132 27 C -0.109 4.109 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.040 0.960 33 H 0.285 0.715 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.033 0.967 37 H 0.041 0.959 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.050 0.950 45 H 0.054 0.946 46 H 0.397 0.603 47 H 0.052 0.948 48 H 0.068 0.932 49 H 0.097 0.903 50 H 0.120 0.880 51 H 0.132 0.868 52 H 0.131 0.869 53 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.640 -0.490 -2.667 9.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.184 4.184 3 C 0.106 3.894 4 H 0.014 0.986 5 C -0.617 4.617 6 H 0.045 0.955 7 C -0.176 4.176 8 N -0.566 5.566 9 Si 0.885 3.115 10 H -0.226 1.226 11 H -0.192 1.192 12 H -0.220 1.220 13 N -0.247 5.247 14 C -0.096 4.096 15 C -0.133 4.133 16 C -0.143 4.143 17 C -0.149 4.149 18 C -0.151 4.151 19 C -0.005 4.005 20 O -0.404 6.404 21 C -0.036 4.036 22 C -0.034 4.034 23 C -0.121 4.121 24 C -0.157 4.157 25 C -0.160 4.160 26 C -0.150 4.150 27 C -0.128 4.128 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.247 0.753 47 H 0.070 0.930 48 H 0.086 0.914 49 H 0.115 0.885 50 H 0.138 0.862 51 H 0.150 0.850 52 H 0.149 0.851 53 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.167 0.388 -3.266 7.885 hybrid contribution -1.139 -0.812 0.996 1.718 sum -8.306 -0.425 -2.269 8.620 Atomic orbital electron populations 1.22015 0.95699 1.01243 1.01301 1.22128 0.95505 0.99935 1.00864 1.19207 0.94540 0.88396 0.87268 0.98566 1.21777 0.91664 0.93319 1.54902 0.95473 1.25673 1.06391 0.92493 0.93090 1.70587 1.12756 1.28161 1.45142 0.83801 0.75385 0.76296 0.75992 1.22578 1.19210 1.22040 1.62537 1.20929 1.37493 1.03743 1.22627 0.90843 0.96602 0.99526 1.21388 0.96144 0.97009 0.98781 1.21465 0.95612 0.97399 0.99784 1.21417 0.95866 0.98099 0.99477 1.21464 0.96673 0.97355 0.99651 1.22232 0.83027 0.96965 0.98235 1.86413 1.27708 1.54250 1.72039 1.21113 0.92724 0.96392 0.93383 1.19596 0.96239 0.93018 0.94536 1.20733 0.94883 0.97313 0.99126 1.21167 0.94850 0.97960 1.01737 1.21166 1.00084 0.93379 1.01351 1.21182 0.94652 0.99325 0.99868 1.20920 0.95147 0.97295 0.99415 0.92102 0.93497 0.92019 0.91537 0.94098 0.90198 0.91921 0.92526 0.94809 0.94057 0.91207 0.91788 0.92807 0.92058 0.91359 0.91776 0.93184 0.92806 0.75335 0.92999 0.91395 0.88526 0.86206 0.85041 0.85147 0.86894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.50 8.00 71.98 0.58 -3.92 16 2 C -0.15 -5.57 4.81 30.60 0.15 -5.42 16 3 C 0.21 9.66 1.29 44.17 0.06 9.72 16 4 H 0.00 -0.18 6.22 -2.39 -0.01 -0.19 16 5 C -0.58 -30.21 6.06 25.60 0.16 -30.06 16 6 H 0.03 1.47 7.58 -2.91 -0.02 1.45 16 7 C 0.03 1.59 5.33 84.65 0.45 2.05 16 8 N -0.93 -53.91 13.40 21.45 0.29 -53.62 16 9 Si 1.06 51.96 29.86 68.60 2.05 54.01 16 10 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 13 N -0.52 -21.73 3.34 -879.92 -2.94 -24.67 16 14 C 0.03 1.11 4.37 86.31 0.38 1.49 16 15 C -0.09 -3.44 4.10 30.60 0.13 -3.32 16 16 C -0.10 -2.87 5.21 30.60 0.16 -2.71 16 17 C -0.11 -2.85 5.21 30.59 0.16 -2.69 16 18 C -0.11 -2.55 5.58 30.59 0.17 -2.38 16 19 C 0.07 1.46 7.05 71.98 0.51 1.97 16 20 O -0.60 -11.89 13.66 -148.98 -2.04 -13.93 16 21 C 0.09 3.41 4.45 85.56 0.38 3.79 16 22 C -0.03 -1.33 3.72 -19.87 -0.07 -1.40 16 23 C -0.10 -4.20 9.72 22.27 0.22 -3.98 16 24 C -0.14 -5.27 10.00 22.27 0.22 -5.04 16 25 C -0.14 -4.95 10.05 22.27 0.22 -4.73 16 26 C -0.13 -4.64 10.05 22.27 0.22 -4.41 16 27 C -0.11 -4.10 8.21 22.27 0.18 -3.92 16 28 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.05 1.48 7.38 -2.39 -0.02 1.47 16 30 H 0.06 1.80 5.34 -2.38 -0.01 1.79 16 31 H 0.07 2.49 4.01 -2.39 -0.01 2.48 16 32 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.28 15.97 4.12 -92.71 -0.38 15.59 16 34 H 0.06 2.02 7.58 -2.39 -0.02 2.01 16 35 H 0.06 1.86 3.75 -2.39 -0.01 1.85 16 36 H 0.03 1.43 5.78 -2.38 -0.01 1.42 16 37 H 0.04 1.69 8.07 -2.39 -0.02 1.67 16 38 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 39 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 43 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 44 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.40 4.03 9.12 -74.06 -0.68 3.36 16 47 H 0.05 1.82 4.19 -2.39 -0.01 1.81 16 48 H 0.07 2.33 7.60 -2.39 -0.02 2.31 16 49 H 0.10 4.16 8.06 -2.91 -0.02 4.13 16 50 H 0.12 4.08 8.06 -2.91 -0.02 4.06 16 51 H 0.13 3.81 8.06 -2.92 -0.02 3.79 16 52 H 0.13 3.82 8.06 -2.91 -0.02 3.80 16 53 H 0.11 3.96 6.62 -2.91 -0.02 3.94 16 Total: -1.00 -63.66 395.80 2.22 -61.44 By element: Atomic # 1 Polarization: 31.16 SS G_CDS: 0.59 Total: 31.75 kcal Atomic # 6 Polarization: -59.25 SS G_CDS: 4.26 Total: -54.98 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -2.65 Total: -78.29 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -2.04 Total: -13.93 kcal Atomic # 14 Polarization: 51.96 SS G_CDS: 2.05 Total: 54.01 kcal Total: -63.66 2.22 -61.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178839.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.758 kcal (2) G-P(sol) polarization free energy of solvation -63.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds