Wall clock time and date at job start Tue Mar 31 2020 12:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.47064 * 2 1 4 4 C 1.52999 * 109.47175 * 119.99830 * 2 1 3 5 5 C 1.50703 * 109.46924 * 184.99911 * 4 2 1 6 6 H 1.07996 * 119.99872 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99577 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00276 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99679 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47353 * 59.99387 * 9 7 5 11 11 H 1.48501 * 109.47242 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46880 * 299.99551 * 9 7 5 13 13 N 1.46900 * 109.47255 * 240.00140 * 2 1 3 14 14 C 1.46901 * 111.00038 * 306.04763 * 13 2 1 15 15 C 1.46903 * 110.99712 * 69.99715 * 13 2 1 16 16 C 1.53003 * 109.46708 * 164.35099 * 15 13 2 17 17 O 1.42899 * 109.47304 * 295.00877 * 16 15 13 18 18 C 1.35900 * 117.00441 * 175.88120 * 17 16 15 19 19 C 1.38761 * 120.05220 * 3.74753 * 18 17 16 20 20 C 1.38120 * 119.94131 * 179.70003 * 19 18 17 21 21 C 1.38292 * 120.05426 * 0.59435 * 20 19 18 22 22 C 1.38240 * 120.11415 * 359.67566 * 21 20 19 23 23 C 1.38173 * 120.05559 * 0.02798 * 22 21 20 24 24 C 1.50696 * 120.02818 * 179.97438 * 23 22 21 25 25 C 1.52998 * 109.47027 * 3.37796 * 24 23 22 26 26 C 1.52995 * 109.47007 * 123.37850 * 24 23 22 27 27 C 1.53000 * 109.46946 * 243.37708 * 24 23 22 28 28 H 1.08999 * 109.46646 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46653 * 299.99740 * 1 2 3 30 30 H 1.09003 * 109.46890 * 60.00054 * 1 2 3 31 31 H 1.08995 * 109.47542 * 305.00212 * 4 2 1 32 32 H 1.09002 * 109.46542 * 65.00514 * 4 2 1 33 33 H 0.96999 * 119.99958 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.47212 * 190.21938 * 14 13 2 35 35 H 1.09007 * 109.47104 * 310.22005 * 14 13 2 36 36 H 1.08999 * 109.47249 * 70.21220 * 14 13 2 37 37 H 1.08999 * 109.47059 * 44.35198 * 15 13 2 38 38 H 1.09001 * 109.47162 * 284.34678 * 15 13 2 39 39 H 1.08998 * 109.47247 * 175.01238 * 16 15 13 40 40 H 1.09006 * 109.47565 * 55.01004 * 16 15 13 41 41 H 1.07998 * 120.02507 * 359.96940 * 19 18 17 42 42 H 1.07997 * 119.97251 * 180.29495 * 20 19 18 43 43 H 1.08005 * 119.94074 * 179.69862 * 21 20 19 44 44 H 1.07993 * 119.97523 * 179.97438 * 22 21 20 45 45 H 1.08998 * 109.47213 * 60.00320 * 25 24 23 46 46 H 1.09005 * 109.46769 * 180.02562 * 25 24 23 47 47 H 1.08997 * 109.47199 * 299.99455 * 25 24 23 48 48 H 1.08996 * 109.47373 * 66.34679 * 26 24 23 49 49 H 1.09003 * 109.47444 * 186.34522 * 26 24 23 50 50 H 1.09004 * 109.47480 * 306.34393 * 26 24 23 51 51 H 1.09001 * 109.47099 * 60.00560 * 27 24 23 52 52 H 1.09005 * 109.47154 * 180.02562 * 27 24 23 53 53 H 1.08991 * 109.47415 * 299.99988 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5420 -0.6148 1.3127 6 1 4.0790 -0.0854 0.5395 7 6 4.2305 -1.1935 2.3578 8 7 3.5766 -1.8377 3.2995 9 14 6.0921 -1.0610 2.4368 10 1 6.4845 0.3699 2.4971 11 1 6.5872 -1.7611 3.6492 12 1 6.6846 -1.6862 1.2271 13 7 2.0198 -0.6925 -1.1994 14 6 1.4344 -2.0354 -1.3079 15 6 1.7529 0.0973 -2.4090 16 6 2.5979 -0.4403 -3.5657 17 8 3.9829 -0.2366 -3.2789 18 6 4.8779 -0.7374 -4.1705 19 6 4.4324 -1.3427 -5.3369 20 6 5.3442 -1.8454 -6.2444 21 6 6.6998 -1.7569 -5.9855 22 6 7.1460 -1.1593 -4.8216 23 6 6.2381 -0.6493 -3.9134 24 6 6.7252 0.0014 -2.6445 25 6 8.2547 0.0425 -2.6470 26 6 6.1769 1.4272 -2.5596 27 6 6.2386 -0.8047 -1.4386 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6055 -0.2618 2.1370 32 1 1.7518 -1.7715 1.2055 33 1 4.0610 -2.2451 4.0345 34 1 1.9444 -2.5917 -2.0943 35 1 1.5493 -2.5596 -0.3590 36 1 0.3751 -1.9516 -1.5505 37 1 2.0098 1.1406 -2.2257 38 1 0.6962 0.0229 -2.6658 39 1 2.3356 0.0868 -4.4830 40 1 2.4058 -1.5059 -3.6915 41 1 3.3737 -1.4168 -5.5369 42 1 4.9981 -2.3124 -7.1546 43 1 7.4110 -2.1549 -6.6942 44 1 8.2051 -1.0917 -4.6215 45 1 8.6013 0.6168 -3.5061 46 1 8.6070 0.5128 -1.7290 47 1 8.6453 -0.9733 -2.7074 48 1 5.0936 1.3937 -2.4443 49 1 6.6179 1.9357 -1.7022 50 1 6.4286 1.9683 -3.4718 51 1 6.6293 -1.8205 -1.4990 52 1 6.5906 -0.3338 -0.5207 53 1 5.1491 -0.8340 -1.4368 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307728150.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:38 Heat of formation + Delta-G solvation = -36.187006 kcal Electronic energy + Delta-G solvation = -29249.632853 eV Core-core repulsion = 25699.665563 eV Total energy + Delta-G solvation = -3549.967290 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.38272 -39.55290 -38.29897 -37.06384 -35.00214 -33.02111 -31.18480 -30.72772 -29.43750 -29.16628 -28.24786 -28.02461 -26.86890 -25.14951 -23.95386 -23.30208 -21.97278 -20.36359 -20.16116 -18.81923 -18.29577 -17.44611 -16.81004 -16.66846 -16.50270 -16.07998 -15.56338 -15.36445 -15.17204 -15.00639 -14.96756 -14.49797 -14.40153 -14.12625 -13.91506 -13.60761 -13.55650 -13.18421 -13.06459 -12.96615 -12.89239 -12.75535 -12.67850 -12.56495 -12.45671 -12.34948 -12.24528 -12.21519 -12.03011 -11.73093 -11.69224 -11.52714 -11.44076 -11.13633 -11.02024 -10.90668 -10.41308 -9.67984 -8.87908 -8.82623 -8.05574 -6.06970 0.49959 0.65182 1.40226 1.43000 1.49689 2.47185 2.49705 2.94233 3.15336 3.33173 3.75101 3.91051 4.04785 4.14548 4.20654 4.21861 4.26010 4.32509 4.36785 4.44817 4.46624 4.51736 4.53884 4.60310 4.63681 4.67018 4.77913 4.79230 4.84569 4.88511 4.94310 4.97115 5.02132 5.03562 5.14397 5.18680 5.18864 5.22234 5.25325 5.31286 5.34720 5.48155 5.53444 5.59177 5.61922 5.71674 5.76770 5.80388 5.96072 6.04850 6.37884 6.48801 6.58522 6.74993 7.07351 7.58140 9.06540 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.010753 B = 0.005568 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.326551 B = 5027.504550 C = 6869.377609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.097 3.903 3 H 0.061 0.939 4 C 0.035 3.965 5 C -0.481 4.481 6 H 0.061 0.939 7 C 0.000 4.000 8 N -0.943 5.943 9 Si 0.931 3.069 10 H -0.274 1.274 11 H -0.296 1.296 12 H -0.258 1.258 13 N -0.526 5.526 14 C 0.033 3.967 15 C 0.056 3.944 16 C 0.064 3.936 17 O -0.301 6.301 18 C 0.122 3.878 19 C -0.220 4.220 20 C -0.090 4.090 21 C -0.166 4.166 22 C -0.093 4.093 23 C -0.120 4.120 24 C -0.016 4.016 25 C -0.140 4.140 26 C -0.132 4.132 27 C -0.131 4.131 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.068 0.932 31 H -0.012 1.012 32 H -0.003 1.003 33 H 0.255 0.745 34 H 0.061 0.939 35 H 0.045 0.955 36 H 0.038 0.962 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.060 0.940 41 H 0.138 0.862 42 H 0.145 0.855 43 H 0.144 0.856 44 H 0.143 0.857 45 H 0.073 0.927 46 H 0.052 0.948 47 H 0.060 0.940 48 H 0.059 0.941 49 H 0.047 0.953 50 H 0.058 0.942 51 H 0.033 0.967 52 H 0.033 0.967 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.697 2.867 -21.417 21.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.011 4.011 3 H 0.079 0.921 4 C -0.002 4.002 5 C -0.519 4.519 6 H 0.079 0.921 7 C -0.195 4.195 8 N -0.586 5.586 9 Si 0.758 3.242 10 H -0.199 1.199 11 H -0.222 1.222 12 H -0.182 1.182 13 N -0.250 5.250 14 C -0.115 4.115 15 C -0.072 4.072 16 C -0.011 4.011 17 O -0.214 6.214 18 C 0.076 3.924 19 C -0.239 4.239 20 C -0.108 4.108 21 C -0.184 4.184 22 C -0.111 4.111 23 C -0.120 4.120 24 C -0.016 4.016 25 C -0.197 4.197 26 C -0.189 4.189 27 C -0.189 4.189 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.007 0.993 32 H 0.015 0.985 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.156 0.844 42 H 0.163 0.837 43 H 0.162 0.838 44 H 0.161 0.839 45 H 0.092 0.908 46 H 0.071 0.929 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.066 0.934 50 H 0.077 0.923 51 H 0.052 0.948 52 H 0.052 0.948 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.268 2.844 -21.039 21.351 hybrid contribution -0.193 -0.285 0.805 0.876 sum 2.075 2.558 -20.234 20.501 Atomic orbital electron populations 1.22397 0.97146 1.01664 1.01961 1.21604 0.91945 0.96978 0.90585 0.92068 1.19074 0.95291 0.94349 0.91475 1.21448 0.93047 1.31324 1.06084 0.92050 1.25671 1.01709 0.96083 0.96029 1.70078 1.36658 1.38662 1.13216 0.86045 0.82443 0.78325 0.77369 1.19896 1.22242 1.18234 1.61907 1.59189 1.02416 1.01471 1.22298 0.96770 0.91146 1.01314 1.22214 0.97257 0.98138 0.89570 1.22965 0.79159 1.00950 0.98042 1.86307 1.16167 1.72925 1.46039 1.19168 0.89704 0.94227 0.89281 1.21447 1.01330 1.05677 0.95441 1.21226 0.93022 0.97563 0.99000 1.21311 0.96257 1.02581 0.98250 1.21244 0.99927 0.96588 0.93318 1.19400 0.90636 1.04220 0.97791 1.19286 0.95896 0.95000 0.91381 1.21963 0.93454 1.02095 1.02235 1.21804 1.01751 0.94506 1.00822 1.21864 1.02757 0.98042 0.96199 0.92946 0.92827 0.91303 0.99332 0.98491 0.93664 0.91997 0.93642 0.94359 0.90669 0.91023 0.89942 0.92155 0.84430 0.83691 0.83831 0.83942 0.90771 0.92877 0.92124 0.92215 0.93358 0.92341 0.94760 0.94797 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.50 8.47 71.98 0.61 -4.89 16 2 C 0.10 3.84 2.25 44.92 0.10 3.94 16 3 H 0.06 2.50 7.86 -2.39 -0.02 2.48 16 4 C 0.04 1.82 4.38 29.85 0.13 1.96 16 5 C -0.48 -27.24 8.84 25.60 0.23 -27.02 16 6 H 0.06 3.47 7.63 -2.91 -0.02 3.45 16 7 C 0.00 0.02 5.46 84.66 0.46 0.49 16 8 N -0.94 -58.91 13.29 21.45 0.28 -58.62 16 9 Si 0.93 46.50 28.71 68.60 1.97 48.47 16 10 H -0.27 -13.27 7.11 99.48 0.71 -12.57 16 11 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 12 H -0.26 -12.34 6.47 99.48 0.64 -11.70 16 13 N -0.53 -18.78 4.33 -897.01 -3.89 -22.67 16 14 C 0.03 1.10 8.30 127.69 1.06 2.16 16 15 C 0.06 1.51 4.79 86.30 0.41 1.92 16 16 C 0.06 1.58 4.89 71.98 0.35 1.93 16 17 O -0.30 -9.30 5.84 -92.42 -0.54 -9.84 16 18 C 0.12 3.51 6.28 22.51 0.14 3.65 16 19 C -0.22 -5.16 9.03 22.37 0.20 -4.96 16 20 C -0.09 -1.80 10.04 22.25 0.22 -1.58 16 21 C -0.17 -3.32 10.04 22.28 0.22 -3.10 16 22 C -0.09 -2.18 8.98 22.25 0.20 -1.98 16 23 C -0.12 -3.42 4.76 -19.77 -0.09 -3.51 16 24 C -0.02 -0.47 0.75 -52.93 -0.04 -0.51 16 25 C -0.14 -3.49 7.14 71.98 0.51 -2.98 16 26 C -0.13 -3.97 8.11 71.98 0.58 -3.38 16 27 C -0.13 -5.07 8.15 71.98 0.59 -4.48 16 28 H 0.05 1.67 6.56 -2.39 -0.02 1.65 16 29 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.07 1.77 7.06 -2.39 -0.02 1.75 16 31 H -0.01 -0.66 8.14 -2.39 -0.02 -0.67 16 32 H 0.00 -0.17 6.16 -2.39 -0.01 -0.19 16 33 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 34 H 0.06 1.93 6.85 -2.39 -0.02 1.91 16 35 H 0.04 1.85 6.00 -2.38 -0.01 1.84 16 36 H 0.04 1.08 6.71 -2.39 -0.02 1.06 16 37 H 0.07 2.09 7.81 -2.39 -0.02 2.07 16 38 H 0.07 1.56 7.18 -2.39 -0.02 1.55 16 39 H 0.08 1.55 7.74 -2.39 -0.02 1.53 16 40 H 0.06 1.45 6.15 -2.38 -0.01 1.44 16 41 H 0.14 2.67 6.32 -2.91 -0.02 2.65 16 42 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 43 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 44 H 0.14 2.79 5.90 -2.91 -0.02 2.77 16 45 H 0.07 1.52 7.67 -2.39 -0.02 1.50 16 46 H 0.05 1.34 8.14 -2.38 -0.02 1.33 16 47 H 0.06 1.42 7.35 -2.39 -0.02 1.40 16 48 H 0.06 2.01 6.10 -2.39 -0.01 1.99 16 49 H 0.05 1.44 8.14 -2.39 -0.02 1.43 16 50 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 51 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 52 H 0.03 1.38 6.74 -2.38 -0.02 1.36 16 53 H 0.07 2.93 6.30 -2.39 -0.02 2.92 16 Total: -1.00 -67.56 396.86 4.53 -63.04 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.80 Total: 21.96 kcal Atomic # 6 Polarization: -48.24 SS G_CDS: 5.90 Total: -42.34 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -3.60 Total: -81.29 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: -0.54 Total: -9.84 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 1.97 Total: 48.47 kcal Total: -67.56 4.53 -63.04 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307728150.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.850 kcal (2) G-P(sol) polarization free energy of solvation -67.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds