Wall clock time and date at job start Tue Mar 31 2020 12:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46964 * 2 1 4 4 C 1.52997 * 109.47360 * 120.00229 * 2 1 3 5 5 C 1.52997 * 109.47175 * 64.99856 * 4 2 1 6 6 H 1.08995 * 109.47429 * 305.00306 * 5 4 2 7 7 C 1.53002 * 109.47209 * 65.00461 * 5 4 2 8 8 C 1.53002 * 109.46973 * 185.00104 * 5 4 2 9 9 C 1.53000 * 109.47165 * 66.10988 * 8 5 4 10 10 H 1.08998 * 109.47072 * 302.90063 * 9 8 5 11 11 C 1.53004 * 109.47133 * 182.90252 * 9 8 5 12 12 N 1.46905 * 109.47217 * 62.90206 * 9 8 5 13 13 C 1.46895 * 110.99797 * 205.00324 * 12 9 8 14 14 C 1.50704 * 109.46973 * 180.02562 * 13 12 9 15 15 C 1.38321 * 119.96372 * 269.71979 * 14 13 12 16 16 C 1.38271 * 120.14151 * 179.76693 * 15 14 13 17 17 C 1.38128 * 120.06810 * 0.51309 * 16 15 14 18 18 C 1.38857 * 119.92647 * 359.73931 * 17 16 15 19 19 O 1.35751 * 120.06705 * 179.97438 * 18 17 16 20 20 C 1.34829 * 117.00172 * 354.50069 * 19 18 17 21 21 H 1.07995 * 119.99760 * 5.07946 * 20 19 18 22 22 C 1.38656 * 119.99917 * 185.07860 * 20 19 18 23 23 N 1.31553 * 119.99980 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99568 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47455 * 60.00412 * 24 22 20 26 26 H 1.48505 * 109.46845 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47206 * 299.99653 * 24 22 20 28 28 C 1.38079 * 119.96828 * 90.00039 * 14 13 12 29 29 H 1.09001 * 109.47288 * 299.99467 * 1 2 3 30 30 H 1.08998 * 109.47364 * 59.99888 * 1 2 3 31 31 H 1.09003 * 109.47096 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47288 * 240.00533 * 2 1 3 33 33 H 1.09003 * 109.46977 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47172 * 300.00229 * 3 2 1 35 35 H 1.09001 * 109.46683 * 60.00163 * 3 2 1 36 36 H 1.08997 * 109.47077 * 185.00161 * 4 2 1 37 37 H 1.09009 * 109.46952 * 304.99966 * 4 2 1 38 38 H 1.08997 * 109.46971 * 64.26129 * 7 5 4 39 39 H 1.08998 * 109.47429 * 184.26928 * 7 5 4 40 40 H 1.09007 * 109.46795 * 304.26576 * 7 5 4 41 41 H 1.09006 * 109.46997 * 186.10408 * 8 5 4 42 42 H 1.08994 * 109.47305 * 306.10393 * 8 5 4 43 43 H 1.09001 * 109.47282 * 59.99839 * 11 9 8 44 44 H 1.09000 * 109.47078 * 179.97438 * 11 9 8 45 45 H 1.08998 * 109.46987 * 299.99863 * 11 9 8 46 46 H 1.00895 * 111.00052 * 81.04816 * 12 9 8 47 47 H 1.09005 * 109.46944 * 299.99648 * 13 12 9 48 48 H 1.09001 * 109.47558 * 59.99388 * 13 12 9 49 49 H 1.08002 * 119.92772 * 0.02562 * 15 14 13 50 50 H 1.08004 * 119.97059 * 180.25544 * 16 15 14 51 51 H 1.08001 * 120.03801 * 179.77365 * 17 16 15 52 52 H 0.97008 * 119.99699 * 179.97438 * 23 22 20 53 53 H 1.08004 * 120.03139 * 359.94712 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1879 6 1 0.5564 -2.2707 1.0526 7 6 2.3449 -2.8708 0.0126 8 6 2.0355 -2.8888 2.4917 9 6 1.2127 -2.3158 3.6474 10 1 1.3617 -1.2373 3.6998 11 6 1.6633 -2.9572 4.9614 12 7 -0.2106 -2.6032 3.4250 13 6 -1.0598 -1.6265 4.1198 14 6 -2.5095 -1.9533 3.8695 15 6 -3.1657 -1.3982 2.7858 16 6 -4.4944 -1.6993 2.5499 17 6 -5.1737 -2.5476 3.4025 18 6 -4.5192 -3.1023 4.4943 19 8 -5.1842 -3.9359 5.3344 20 6 -6.5057 -4.0949 5.1198 21 1 -6.9722 -3.6361 4.2606 22 6 -7.2658 -4.8474 6.0021 23 7 -6.6974 -5.4067 7.0484 24 14 -9.0967 -5.0682 5.7042 25 1 -9.3084 -5.7314 4.3925 26 1 -9.6757 -5.9091 6.7826 27 1 -9.7613 -3.7403 5.7006 28 6 -3.1830 -2.8020 4.7256 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 3.1263 -0.6443 1.2950 37 1 1.6054 -0.2617 2.1370 38 1 3.4212 -2.8624 0.1847 39 1 1.9992 -3.9005 -0.0775 40 1 2.1198 -2.3302 -0.9069 41 1 1.8465 -3.9590 2.4070 42 1 3.0955 -2.7210 2.6820 43 1 2.7194 -2.7439 5.1265 44 1 1.0775 -2.5486 5.7848 45 1 1.5143 -4.0357 4.9091 46 1 -0.4377 -3.5450 3.7070 47 1 -0.8583 -1.6664 5.1903 48 1 -0.8428 -0.6257 3.7464 49 1 -2.6378 -0.7315 2.1200 50 1 -5.0029 -1.2676 1.7005 51 1 -6.2126 -2.7796 3.2199 52 1 -7.2293 -5.9329 7.6659 53 1 -2.6710 -3.2322 5.5737 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342030412.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:44 Heat of formation + Delta-G solvation = -56.427293 kcal Electronic energy + Delta-G solvation = -27212.394670 eV Core-core repulsion = 23661.549695 eV Total energy + Delta-G solvation = -3550.844975 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.79878 -39.55199 -38.42930 -37.14497 -34.51137 -34.21541 -32.72111 -30.95460 -29.94640 -27.91840 -27.68645 -27.38827 -27.12646 -25.66783 -23.17677 -22.29698 -22.12208 -21.35676 -19.99622 -19.47240 -18.76640 -16.78048 -16.69150 -16.54480 -16.17616 -16.11081 -15.90120 -15.47375 -15.36870 -15.12251 -14.77750 -14.53737 -14.19894 -14.17216 -13.95067 -13.74355 -13.58680 -13.36534 -13.29902 -12.99486 -12.93575 -12.81837 -12.71542 -12.50195 -12.37552 -12.23264 -12.17870 -12.17417 -12.03327 -11.92156 -11.83695 -11.56329 -11.17273 -11.00894 -10.91284 -10.85927 -10.78939 -9.69343 -9.19493 -8.95272 -8.46429 -6.14730 0.55325 0.78949 1.34471 1.45451 1.50678 2.18078 2.81422 3.13195 3.39495 3.60040 3.87010 3.95851 4.01756 4.08062 4.13774 4.21373 4.31284 4.34386 4.40052 4.49379 4.56679 4.61699 4.62891 4.67948 4.72134 4.77138 4.81864 4.86866 4.89085 4.95447 5.00823 5.06370 5.08372 5.10842 5.14398 5.15980 5.18919 5.21779 5.29996 5.31324 5.34131 5.35665 5.47632 5.53662 5.59785 5.68465 5.73885 5.76210 5.84010 5.88656 6.03645 6.18259 6.28735 6.47487 6.98543 7.80416 8.76820 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.018604 B = 0.002570 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.657503 B =10893.212611 C =11725.915187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 C -0.146 4.146 4 C -0.102 4.102 5 C -0.086 4.086 6 H 0.075 0.925 7 C -0.147 4.147 8 C -0.096 4.096 9 C 0.084 3.916 10 H 0.084 0.916 11 C -0.183 4.183 12 N -0.674 5.674 13 C 0.114 3.886 14 C -0.034 4.034 15 C -0.167 4.167 16 C -0.073 4.073 17 C -0.245 4.245 18 C 0.113 3.887 19 O -0.234 6.234 20 C -0.413 4.413 21 H 0.100 0.900 22 C -0.023 4.023 23 N -0.922 5.922 24 Si 1.017 2.983 25 H -0.257 1.257 26 H -0.272 1.272 27 H -0.257 1.257 28 C -0.196 4.196 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.044 0.956 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.045 0.955 45 H 0.051 0.949 46 H 0.336 0.664 47 H 0.032 0.968 48 H 0.094 0.906 49 H 0.142 0.858 50 H 0.142 0.858 51 H 0.116 0.884 52 H 0.272 0.728 53 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.756 10.855 -13.202 25.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.139 4.139 5 C -0.105 4.105 6 H 0.093 0.907 7 C -0.204 4.204 8 C -0.134 4.134 9 C -0.025 4.025 10 H 0.102 0.898 11 C -0.241 4.241 12 N -0.304 5.304 13 C -0.015 4.015 14 C -0.034 4.034 15 C -0.186 4.186 16 C -0.091 4.091 17 C -0.265 4.265 18 C 0.063 3.937 19 O -0.141 6.141 20 C -0.489 4.489 21 H 0.118 0.882 22 C -0.221 4.221 23 N -0.561 5.561 24 Si 0.837 3.163 25 H -0.182 1.182 26 H -0.196 1.196 27 H -0.182 1.182 28 C -0.216 4.216 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.154 0.846 47 H 0.050 0.950 48 H 0.112 0.888 49 H 0.160 0.840 50 H 0.160 0.840 51 H 0.134 0.866 52 H 0.081 0.919 53 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 18.782 10.942 -13.441 25.557 hybrid contribution -1.021 -0.876 1.329 1.891 sum 17.762 10.066 -12.112 23.738 Atomic orbital electron populations 1.21840 0.95592 1.01603 1.01170 1.21149 0.95618 0.96088 0.98645 1.21831 1.00918 0.95955 1.01581 1.21641 1.00143 0.94679 0.97424 1.21065 1.01100 0.94371 0.93922 0.90683 1.21876 1.00301 0.99911 0.98289 1.21565 0.98578 0.99398 0.93835 1.21685 0.86977 1.00367 0.93481 0.89772 1.22500 1.02460 1.00994 0.98186 1.60641 1.03196 1.05917 1.60646 1.20770 0.87278 0.97169 0.96259 1.19576 0.95546 0.94603 0.93696 1.20895 0.94364 1.04296 0.99055 1.21139 0.94882 0.95305 0.97809 1.21287 1.01346 1.05386 0.98450 1.19868 0.93073 0.90183 0.90596 1.83935 1.23051 1.56647 1.50516 1.21764 0.81304 1.34117 1.11736 0.88250 1.26574 1.05637 0.95469 0.94382 1.70182 1.38772 1.33104 1.14032 0.84668 0.73688 0.79255 0.78734 1.18170 1.19619 1.18178 1.20225 0.92341 1.05608 1.03394 0.93146 0.93150 0.92933 0.91268 0.92482 0.92785 0.93046 0.92145 0.92401 0.92620 0.93684 0.92508 0.92899 0.91051 0.90856 0.93609 0.92949 0.84577 0.94966 0.88804 0.83996 0.83991 0.86620 0.91902 0.87835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 8.95 71.98 0.64 -1.75 16 2 C -0.10 -1.40 2.79 -10.79 -0.03 -1.43 16 3 C -0.15 -1.88 9.19 71.98 0.66 -1.22 16 4 C -0.10 -1.48 4.03 30.59 0.12 -1.36 16 5 C -0.09 -1.42 2.19 -10.79 -0.02 -1.44 16 6 H 0.07 1.56 5.72 -2.39 -0.01 1.55 16 7 C -0.15 -2.24 9.05 71.98 0.65 -1.58 16 8 C -0.10 -1.57 4.36 30.59 0.13 -1.44 16 9 C 0.08 1.52 2.45 44.92 0.11 1.63 16 10 H 0.08 1.44 6.03 -2.39 -0.01 1.43 16 11 C -0.18 -3.27 9.16 71.98 0.66 -2.61 16 12 N -0.67 -15.42 5.50 -495.56 -2.72 -18.14 16 13 C 0.11 2.88 5.61 85.56 0.48 3.36 16 14 C -0.03 -1.12 5.39 -19.88 -0.11 -1.23 16 15 C -0.17 -5.24 9.70 22.30 0.22 -5.03 16 16 C -0.07 -2.55 10.04 22.25 0.22 -2.33 16 17 C -0.25 -10.86 9.17 22.39 0.21 -10.66 16 18 C 0.11 5.70 6.65 22.58 0.15 5.85 16 19 O -0.23 -14.35 9.76 -22.74 -0.22 -14.57 16 20 C -0.41 -24.44 9.49 67.92 0.64 -23.80 16 21 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16 22 C -0.02 -1.35 5.49 84.83 0.47 -0.89 16 23 N -0.92 -57.36 13.67 21.61 0.30 -57.06 16 24 Si 1.02 43.39 29.55 68.60 2.03 45.42 16 25 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 26 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 27 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 28 C -0.20 -8.40 9.64 22.39 0.22 -8.19 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 0.99 6.46 -2.39 -0.02 0.97 16 32 H 0.07 1.00 6.26 -2.39 -0.01 0.99 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.06 0.91 6.33 -2.38 -0.02 0.90 16 38 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.06 0.83 6.28 -2.38 -0.01 0.82 16 41 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 42 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.04 0.91 7.45 -2.39 -0.02 0.89 16 45 H 0.05 1.00 8.13 -2.39 -0.02 0.98 16 46 H 0.34 8.70 8.46 -89.70 -0.76 7.94 16 47 H 0.03 0.84 7.38 -2.38 -0.02 0.82 16 48 H 0.09 2.05 8.00 -2.39 -0.02 2.03 16 49 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 50 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 51 H 0.12 5.23 5.64 -2.91 -0.02 5.21 16 52 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 53 H 0.10 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -67.71 412.56 4.91 -62.79 By element: Atomic # 1 Polarization: 35.57 SS G_CDS: 0.11 Total: 35.68 kcal Atomic # 6 Polarization: -59.54 SS G_CDS: 5.42 Total: -54.12 kcal Atomic # 7 Polarization: -72.78 SS G_CDS: -2.43 Total: -75.21 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.22 Total: -14.57 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -67.71 4.91 -62.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342030412.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.367 kcal (2) G-P(sol) polarization free energy of solvation -67.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds