Wall clock time and date at job start Tue Mar 31 2020 12:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47103 * 2 1 4 4 C 1.52995 * 109.46914 * 185.33087 * 3 2 1 5 5 H 1.09001 * 109.47345 * 54.26321 * 4 3 2 6 6 C 1.53005 * 109.46996 * 174.25969 * 4 3 2 7 7 C 1.50700 * 109.47277 * 184.90689 * 6 4 3 8 8 C 1.38237 * 119.99880 * 274.29962 * 7 6 4 9 9 C 1.38229 * 119.99980 * 179.76469 * 8 7 6 10 10 C 1.38237 * 119.99833 * 0.50692 * 9 8 7 11 11 C 1.38237 * 120.00072 * 359.74273 * 10 9 8 12 12 C 1.38228 * 119.99931 * 94.56997 * 7 6 4 13 13 N 1.46900 * 109.47322 * 294.25908 * 4 3 2 14 14 C 1.46895 * 110.99845 * 328.94474 * 13 4 3 15 15 C 1.53006 * 109.47235 * 296.04592 * 14 13 4 16 16 C 1.53000 * 109.47272 * 185.85214 * 15 14 13 17 17 C 1.46897 * 110.99585 * 92.89407 * 13 4 3 18 18 C 1.53010 * 109.46880 * 163.58740 * 17 13 4 19 19 H 1.08996 * 109.46685 * 59.99678 * 18 17 13 20 20 O 1.42904 * 109.47154 * 300.00287 * 18 17 13 21 21 C 1.50696 * 109.46929 * 180.02562 * 18 17 13 22 22 H 1.07993 * 120.00533 * 0.02562 * 21 18 17 23 23 C 1.37884 * 119.99560 * 179.72221 * 21 18 17 24 24 N 1.31513 * 120.00185 * 0.27743 * 23 21 18 25 25 Si 1.86797 * 119.99692 * 180.27525 * 23 21 18 26 26 H 1.48498 * 109.47586 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47021 * 120.00343 * 25 23 21 28 28 H 1.48503 * 109.47203 * 239.99990 * 25 23 21 29 29 H 1.08998 * 109.47481 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47177 * 300.00299 * 1 2 3 31 31 H 1.09004 * 109.47013 * 60.00025 * 1 2 3 32 32 H 1.08997 * 109.46735 * 239.99804 * 2 1 3 33 33 H 1.08997 * 109.46843 * 119.99609 * 2 1 3 34 34 H 1.09002 * 109.46946 * 65.32785 * 3 2 1 35 35 H 1.08999 * 109.47203 * 305.33325 * 3 2 1 36 36 H 1.09001 * 109.47151 * 304.91179 * 6 4 3 37 37 H 1.09003 * 109.46702 * 64.90534 * 6 4 3 38 38 H 1.08001 * 119.99937 * 359.97438 * 8 7 6 39 39 H 1.08000 * 120.00241 * 180.22832 * 9 8 7 40 40 H 1.08004 * 120.00190 * 179.72443 * 10 9 8 41 41 H 1.07998 * 119.99909 * 179.97438 * 11 10 9 42 42 H 1.07999 * 120.00546 * 0.02562 * 12 7 6 43 43 H 1.08994 * 109.47635 * 56.04496 * 14 13 4 44 44 H 1.09002 * 109.46932 * 176.04667 * 14 13 4 45 45 H 1.08997 * 109.46823 * 305.84784 * 15 14 13 46 46 H 1.08989 * 109.47004 * 65.84888 * 15 14 13 47 47 H 1.09008 * 109.46747 * 300.00259 * 16 15 14 48 48 H 1.09000 * 109.47502 * 59.99430 * 16 15 14 49 49 H 1.08990 * 109.47055 * 180.02562 * 16 15 14 50 50 H 1.09000 * 109.47347 * 43.59700 * 17 13 4 51 51 H 1.08993 * 109.47646 * 283.58435 * 17 13 4 52 52 H 0.96706 * 113.99583 * 300.00268 * 20 18 17 53 53 H 0.97002 * 120.00276 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5641 1.4445 -0.1340 5 1 3.8522 0.8709 -1.0150 6 6 4.0615 2.8843 -0.2779 7 6 5.5472 2.8797 -0.5304 8 6 6.4289 2.8363 0.5334 9 6 7.7916 2.8272 0.3017 10 6 8.2727 2.8720 -0.9935 11 6 7.3911 2.9206 -2.0571 12 6 6.0283 2.9245 -1.8255 13 7 4.1617 0.8373 1.0627 14 6 3.3299 1.0821 2.2484 15 6 3.2790 2.5843 2.5345 16 6 2.5358 2.8281 3.8495 17 6 4.3880 -0.6007 0.8661 18 6 5.3602 -1.1142 1.9303 19 1 4.9373 -0.9449 2.9205 20 8 6.6022 -0.4166 1.8172 21 6 5.5928 -2.5893 1.7282 22 1 5.0973 -3.1086 0.9213 23 6 6.4432 -3.2747 2.5698 24 7 7.0470 -2.6422 3.5522 25 14 6.7376 -5.1016 2.3147 26 1 5.9464 -5.5726 1.1496 27 1 8.1813 -5.3396 2.0609 28 1 6.3196 -5.8449 3.5305 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.7567 1.9280 0.9339 35 1 1.6008 1.9832 -0.8384 36 1 3.5522 3.3628 -1.1145 37 1 3.8504 3.4349 0.6389 38 1 6.0530 2.8062 1.5455 39 1 8.4804 2.7896 1.1327 40 1 9.3375 2.8694 -1.1744 41 1 7.7670 2.9560 -3.0689 42 1 5.3395 2.9632 -2.6564 43 1 2.3208 0.7124 2.0670 44 1 3.7582 0.5632 3.1060 45 1 4.2940 2.9737 2.6133 46 1 2.7573 3.0912 1.7229 47 1 1.5208 2.4386 3.7708 48 1 3.0575 2.3211 4.6612 49 1 2.4992 3.8982 4.0531 50 1 4.8110 -0.7700 -0.1241 51 1 3.4407 -1.1328 0.9524 52 1 7.0361 -0.5225 0.9594 53 1 7.6450 -3.1244 4.1445 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001459431052.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:40 Heat of formation + Delta-G solvation = -27.692559 kcal Electronic energy + Delta-G solvation = -29264.955411 eV Core-core repulsion = 25715.356468 eV Total energy + Delta-G solvation = -3549.598944 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.79462 -38.31995 -35.49166 -33.84138 -33.02721 -32.27254 -31.93911 -30.40620 -29.50026 -27.64692 -26.13311 -25.80986 -23.87841 -22.26448 -22.09533 -21.16612 -20.49148 -19.96611 -19.38397 -17.09144 -16.48244 -16.25417 -15.22246 -14.84432 -14.55080 -14.46251 -14.34347 -14.27138 -13.83359 -13.55904 -13.30508 -13.14520 -12.96507 -12.80363 -12.62120 -12.59167 -12.26976 -12.08312 -11.75895 -11.65787 -11.47757 -11.30972 -11.17370 -11.03148 -10.91442 -10.79748 -10.71666 -10.62051 -10.42150 -10.35714 -10.30105 -10.17270 -9.92750 -9.81057 -8.89920 -8.50797 -8.43565 -8.22490 -7.95912 -7.35806 -5.94881 -4.12103 1.81548 1.90440 3.28594 3.37132 3.40075 4.23952 4.35000 4.52337 4.88189 5.06958 5.13881 5.21418 5.24532 5.30779 5.32468 5.33447 5.42104 5.43733 5.56764 5.59290 5.61983 5.73659 5.79128 5.84533 5.88619 5.92589 5.96558 6.00247 6.02514 6.07823 6.09259 6.16783 6.19791 6.23379 6.28164 6.37034 6.41353 6.47691 6.50713 6.53946 6.59458 6.70924 6.73412 6.88340 6.95927 7.03544 7.16887 7.49365 7.69160 7.78327 7.86547 8.00296 8.29179 8.92115 9.54161 9.71982 11.08870 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.008610 B = 0.005443 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3251.298114 B = 5142.530543 C = 6730.439174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 C -0.154 4.154 4 C 0.088 3.912 5 H 0.069 0.931 6 C -0.082 4.082 7 C -0.065 4.065 8 C -0.069 4.069 9 C -0.115 4.115 10 C -0.130 4.130 11 C -0.131 4.131 12 C -0.129 4.129 13 N -0.509 5.509 14 C 0.045 3.955 15 C -0.128 4.128 16 C -0.152 4.152 17 C 0.029 3.971 18 C 0.241 3.759 19 H 0.050 0.950 20 O -0.549 6.549 21 C -0.571 4.571 22 H 0.052 0.948 23 C 0.081 3.919 24 N -0.857 5.857 25 Si 0.884 3.116 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.284 1.284 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.125 0.875 39 H 0.116 0.884 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.039 0.961 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.066 0.934 47 H 0.048 0.952 48 H 0.056 0.944 49 H 0.049 0.951 50 H 0.056 0.944 51 H 0.032 0.968 52 H 0.339 0.661 53 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.939 12.813 -7.325 16.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.172 4.172 3 C -0.193 4.193 4 C -0.022 4.022 5 H 0.088 0.912 6 C -0.119 4.119 7 C -0.065 4.065 8 C -0.087 4.087 9 C -0.133 4.133 10 C -0.149 4.149 11 C -0.149 4.149 12 C -0.147 4.147 13 N -0.231 5.231 14 C -0.083 4.083 15 C -0.165 4.165 16 C -0.210 4.210 17 C -0.098 4.098 18 C 0.183 3.817 19 H 0.068 0.932 20 O -0.350 6.350 21 C -0.610 4.610 22 H 0.070 0.930 23 C -0.125 4.125 24 N -0.493 5.493 25 Si 0.711 3.289 26 H -0.199 1.199 27 H -0.209 1.209 28 H -0.210 1.210 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.143 0.857 39 H 0.134 0.866 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.057 0.943 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.084 0.916 47 H 0.067 0.933 48 H 0.075 0.925 49 H 0.069 0.931 50 H 0.075 0.925 51 H 0.050 0.950 52 H 0.182 0.818 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.512 13.188 -6.466 16.498 hybrid contribution -0.438 -1.930 -0.930 2.186 sum -7.950 11.259 -7.396 15.641 Atomic orbital electron populations 1.21752 0.96297 1.01305 1.01223 1.21840 0.95438 0.97095 1.02806 1.22435 0.97103 0.97110 1.02618 1.21736 0.90895 0.94965 0.94562 0.91231 1.20995 0.91871 0.96898 1.02183 1.19662 0.95282 0.98809 0.92783 1.21015 0.92351 0.96108 0.99198 1.21141 0.95989 0.99729 0.96479 1.21025 0.99020 1.01698 0.93116 1.20935 0.93517 1.02133 0.98317 1.20926 0.95198 1.02390 0.96218 1.62185 1.45379 1.14396 1.01188 1.22330 0.95746 0.95688 0.94520 1.21923 1.01013 0.96862 0.96738 1.21763 1.00152 1.00827 0.98218 1.23231 0.99674 0.85328 1.01575 1.19245 0.80994 0.88857 0.92612 0.93201 1.86549 1.37304 1.74186 1.36921 1.21719 1.28986 0.94978 1.15318 0.93005 1.24989 0.95221 0.97603 0.94672 1.70089 1.27849 1.35251 1.16154 0.86705 0.78045 0.86067 0.78055 1.19854 1.20942 1.21001 0.92992 0.93031 0.93216 0.92281 0.90614 0.90334 0.92412 0.92116 0.89675 0.85662 0.86575 0.87094 0.87202 0.87286 0.94339 0.90464 0.91095 0.91568 0.93291 0.92527 0.93148 0.92500 0.95006 0.81843 0.93222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 37.16 0.37 -1.25 16 2 C -0.13 -1.73 4.54 -26.73 -0.12 -1.85 16 3 C -0.15 -1.85 3.96 -26.73 -0.11 -1.95 16 4 C 0.09 1.21 1.83 -67.71 -0.12 1.08 16 5 H 0.07 1.06 7.41 -51.93 -0.39 0.67 16 6 C -0.08 -1.03 4.67 -27.88 -0.13 -1.16 16 7 C -0.07 -0.93 5.01 -104.63 -0.52 -1.46 16 8 C -0.07 -1.07 9.10 -39.58 -0.36 -1.43 16 9 C -0.12 -1.76 10.05 -39.59 -0.40 -2.16 16 10 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 11 C -0.13 -1.76 10.05 -39.58 -0.40 -2.16 16 12 C -0.13 -1.76 9.68 -39.59 -0.38 -2.15 16 13 N -0.51 -8.27 3.41 -226.65 -0.77 -9.04 16 14 C 0.04 0.69 4.12 -3.82 -0.02 0.68 16 15 C -0.13 -1.64 4.08 -26.73 -0.11 -1.75 16 16 C -0.15 -1.75 9.91 37.16 0.37 -1.38 16 17 C 0.03 0.58 4.01 -3.82 -0.02 0.56 16 18 C 0.24 5.93 2.84 -27.88 -0.08 5.85 16 19 H 0.05 1.37 6.65 -51.93 -0.35 1.02 16 20 O -0.55 -13.91 12.59 -35.23 -0.44 -14.36 16 21 C -0.57 -15.58 8.76 -34.44 -0.30 -15.88 16 22 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 23 C 0.08 2.27 5.40 -17.82 -0.10 2.17 16 24 N -0.86 -25.31 12.83 55.43 0.71 -24.60 16 25 Si 0.88 21.32 29.54 -169.99 -5.02 16.29 16 26 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.13 4.19 -51.93 -0.22 0.91 16 34 H 0.08 0.93 4.35 -51.93 -0.23 0.71 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.67 8.05 -51.93 -0.42 0.25 16 37 H 0.09 1.05 4.39 -51.93 -0.23 0.82 16 38 H 0.13 2.07 6.79 -52.49 -0.36 1.71 16 39 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 40 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 41 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 42 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 43 H 0.04 0.57 4.33 -51.93 -0.22 0.35 16 44 H 0.08 1.43 6.48 -51.93 -0.34 1.09 16 45 H 0.07 0.99 6.67 -51.93 -0.35 0.65 16 46 H 0.07 0.77 4.25 -51.94 -0.22 0.55 16 47 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 48 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.06 1.16 7.60 -51.93 -0.39 0.77 16 51 H 0.03 0.63 5.38 -51.93 -0.28 0.35 16 52 H 0.34 8.20 9.04 45.56 0.41 8.61 16 53 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 396.66 15.07 5.98 5.98 Total: -1.00 -28.97 396.66 -10.55 -39.52 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -8.18 Total: 12.68 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: -2.82 Total: -26.47 kcal Atomic # 7 Polarization: -33.58 SS G_CDS: -0.06 Total: -33.64 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.44 Total: -14.36 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -28.97 -10.55 -39.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459431052.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.831 kcal (2) G-P(sol) polarization free energy of solvation -28.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds