Wall clock time and date at job start Tue Mar 31 2020 12:20:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53001 * 109.47103 * 2 1
4 4 C 1.52995 * 109.46914 * 185.33087 * 3 2 1
5 5 H 1.09001 * 109.47345 * 54.26321 * 4 3 2
6 6 C 1.53005 * 109.46996 * 174.25969 * 4 3 2
7 7 C 1.50700 * 109.47277 * 184.90689 * 6 4 3
8 8 C 1.38237 * 119.99880 * 274.29962 * 7 6 4
9 9 C 1.38229 * 119.99980 * 179.76469 * 8 7 6
10 10 C 1.38237 * 119.99833 * 0.50692 * 9 8 7
11 11 C 1.38237 * 120.00072 * 359.74273 * 10 9 8
12 12 C 1.38228 * 119.99931 * 94.56997 * 7 6 4
13 13 N 1.46900 * 109.47322 * 294.25908 * 4 3 2
14 14 C 1.46895 * 110.99845 * 328.94474 * 13 4 3
15 15 C 1.53006 * 109.47235 * 296.04592 * 14 13 4
16 16 C 1.53000 * 109.47272 * 185.85214 * 15 14 13
17 17 C 1.46897 * 110.99585 * 92.89407 * 13 4 3
18 18 C 1.53010 * 109.46880 * 163.58740 * 17 13 4
19 19 H 1.08996 * 109.46685 * 59.99678 * 18 17 13
20 20 O 1.42904 * 109.47154 * 300.00287 * 18 17 13
21 21 C 1.50696 * 109.46929 * 180.02562 * 18 17 13
22 22 H 1.07993 * 120.00533 * 0.02562 * 21 18 17
23 23 C 1.37884 * 119.99560 * 179.72221 * 21 18 17
24 24 N 1.31513 * 120.00185 * 0.27743 * 23 21 18
25 25 Si 1.86797 * 119.99692 * 180.27525 * 23 21 18
26 26 H 1.48498 * 109.47586 * 0.02562 * 25 23 21
27 27 H 1.48504 * 109.47021 * 120.00343 * 25 23 21
28 28 H 1.48503 * 109.47203 * 239.99990 * 25 23 21
29 29 H 1.08998 * 109.47481 * 180.02562 * 1 2 3
30 30 H 1.09008 * 109.47177 * 300.00299 * 1 2 3
31 31 H 1.09004 * 109.47013 * 60.00025 * 1 2 3
32 32 H 1.08997 * 109.46735 * 239.99804 * 2 1 3
33 33 H 1.08997 * 109.46843 * 119.99609 * 2 1 3
34 34 H 1.09002 * 109.46946 * 65.32785 * 3 2 1
35 35 H 1.08999 * 109.47203 * 305.33325 * 3 2 1
36 36 H 1.09001 * 109.47151 * 304.91179 * 6 4 3
37 37 H 1.09003 * 109.46702 * 64.90534 * 6 4 3
38 38 H 1.08001 * 119.99937 * 359.97438 * 8 7 6
39 39 H 1.08000 * 120.00241 * 180.22832 * 9 8 7
40 40 H 1.08004 * 120.00190 * 179.72443 * 10 9 8
41 41 H 1.07998 * 119.99909 * 179.97438 * 11 10 9
42 42 H 1.07999 * 120.00546 * 0.02562 * 12 7 6
43 43 H 1.08994 * 109.47635 * 56.04496 * 14 13 4
44 44 H 1.09002 * 109.46932 * 176.04667 * 14 13 4
45 45 H 1.08997 * 109.46823 * 305.84784 * 15 14 13
46 46 H 1.08989 * 109.47004 * 65.84888 * 15 14 13
47 47 H 1.09008 * 109.46747 * 300.00259 * 16 15 14
48 48 H 1.09000 * 109.47502 * 59.99430 * 16 15 14
49 49 H 1.08990 * 109.47055 * 180.02562 * 16 15 14
50 50 H 1.09000 * 109.47347 * 43.59700 * 17 13 4
51 51 H 1.08993 * 109.47646 * 283.58435 * 17 13 4
52 52 H 0.96706 * 113.99583 * 300.00268 * 20 18 17
53 53 H 0.97002 * 120.00276 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5641 1.4445 -0.1340
5 1 3.8522 0.8709 -1.0150
6 6 4.0615 2.8843 -0.2779
7 6 5.5472 2.8797 -0.5304
8 6 6.4289 2.8363 0.5334
9 6 7.7916 2.8272 0.3017
10 6 8.2727 2.8720 -0.9935
11 6 7.3911 2.9206 -2.0571
12 6 6.0283 2.9245 -1.8255
13 7 4.1617 0.8373 1.0627
14 6 3.3299 1.0821 2.2484
15 6 3.2790 2.5843 2.5345
16 6 2.5358 2.8281 3.8495
17 6 4.3880 -0.6007 0.8661
18 6 5.3602 -1.1142 1.9303
19 1 4.9373 -0.9449 2.9205
20 8 6.6022 -0.4166 1.8172
21 6 5.5928 -2.5893 1.7282
22 1 5.0973 -3.1086 0.9213
23 6 6.4432 -3.2747 2.5698
24 7 7.0470 -2.6422 3.5522
25 14 6.7376 -5.1016 2.3147
26 1 5.9464 -5.5726 1.1496
27 1 8.1813 -5.3396 2.0609
28 1 6.3196 -5.8449 3.5305
29 1 -0.3634 -1.0276 0.0005
30 1 -0.3634 0.5139 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 1.8933 -0.5139 -0.8900
33 1 1.8933 -0.5138 0.8900
34 1 1.7567 1.9280 0.9339
35 1 1.6008 1.9832 -0.8384
36 1 3.5522 3.3628 -1.1145
37 1 3.8504 3.4349 0.6389
38 1 6.0530 2.8062 1.5455
39 1 8.4804 2.7896 1.1327
40 1 9.3375 2.8694 -1.1744
41 1 7.7670 2.9560 -3.0689
42 1 5.3395 2.9632 -2.6564
43 1 2.3208 0.7124 2.0670
44 1 3.7582 0.5632 3.1060
45 1 4.2940 2.9737 2.6133
46 1 2.7573 3.0912 1.7229
47 1 1.5208 2.4386 3.7708
48 1 3.0575 2.3211 4.6612
49 1 2.4992 3.8982 4.0531
50 1 4.8110 -0.7700 -0.1241
51 1 3.4407 -1.1328 0.9524
52 1 7.0361 -0.5225 0.9594
53 1 7.6450 -3.1244 4.1445
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001459431052.mol2 53
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:20:39
Heat of formation + Delta-G solvation = -43.412836 kcal
Electronic energy + Delta-G solvation = -29265.637094 eV
Core-core repulsion = 25715.356468 eV
Total energy + Delta-G solvation = -3550.280626 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 319.225 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-40.99406 -39.46874 -37.40215 -34.89692 -34.19559 -34.07548 -33.54686 -31.50984
-30.79568 -29.28787 -27.33804 -27.04808 -25.53696 -23.43136 -23.22145 -22.48427
-21.59656 -21.42200 -20.61532 -19.00987 -17.74838 -17.41224 -16.63571 -16.52272
-16.28374 -15.78240 -15.68365 -15.33780 -15.18865 -14.94644 -14.79357 -14.30560
-14.27984 -14.06776 -13.79051 -13.68833 -13.39629 -13.22868 -13.13313 -12.95631
-12.92993 -12.80092 -12.68125 -12.44451 -12.31535 -12.21756 -12.03133 -11.92158
-11.71262 -11.59469 -11.53362 -11.40028 -11.33324 -10.98330 -10.83238 -10.65285
-9.98883 -9.56048 -9.30136 -8.72620 -8.10622 -6.35448 0.70626 0.78680
1.36611 1.38347 1.49663 2.38141 3.11174 3.14451 3.17506 3.83895
4.05036 4.08272 4.12239 4.20114 4.23349 4.28774 4.36373 4.37900
4.40220 4.47402 4.58645 4.60710 4.62823 4.72418 4.73689 4.79278
4.81110 4.88568 4.89973 4.93330 4.96839 5.01533 5.07349 5.10839
5.14587 5.20202 5.21424 5.29468 5.36371 5.40056 5.45006 5.45908
5.49866 5.60930 5.64006 5.79152 5.85114 5.90048 6.04223 6.12184
6.38087 6.40552 6.56348 6.79349 7.37849 7.67488 8.93146
Molecular weight = 319.23amu
Principal moments of inertia in cm(-1)
A = 0.008610 B = 0.005443 C = 0.004159
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3251.298114 B = 5142.530543 C = 6730.439174
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.134 4.134
3 C -0.146 4.146
4 C 0.090 3.910
5 H 0.059 0.941
6 C -0.076 4.076
7 C -0.072 4.072
8 C -0.086 4.086
9 C -0.136 4.136
10 C -0.138 4.138
11 C -0.133 4.133
12 C -0.133 4.133
13 N -0.513 5.513
14 C 0.050 3.950
15 C -0.118 4.118
16 C -0.149 4.149
17 C 0.052 3.948
18 C 0.244 3.756
19 H 0.014 0.986
20 O -0.558 6.558
21 C -0.585 4.585
22 H 0.052 0.948
23 C 0.029 3.971
24 N -0.897 5.897
25 Si 0.953 3.047
26 H -0.265 1.265
27 H -0.280 1.280
28 H -0.279 1.279
29 H 0.049 0.951
30 H 0.056 0.944
31 H 0.065 0.935
32 H 0.050 0.950
33 H 0.048 0.952
34 H 0.083 0.917
35 H 0.083 0.917
36 H 0.088 0.912
37 H 0.088 0.912
38 H 0.107 0.893
39 H 0.109 0.891
40 H 0.127 0.873
41 H 0.136 0.864
42 H 0.134 0.866
43 H 0.049 0.951
44 H 0.036 0.964
45 H 0.056 0.944
46 H 0.088 0.912
47 H 0.059 0.941
48 H 0.038 0.962
49 H 0.069 0.931
50 H 0.050 0.950
51 H 0.031 0.969
52 H 0.342 0.658
53 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.551 13.625 -9.603 19.211
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.172 4.172
3 C -0.184 4.184
4 C -0.019 4.019
5 H 0.077 0.923
6 C -0.114 4.114
7 C -0.072 4.072
8 C -0.104 4.104
9 C -0.154 4.154
10 C -0.156 4.156
11 C -0.151 4.151
12 C -0.151 4.151
13 N -0.236 5.236
14 C -0.078 4.078
15 C -0.156 4.156
16 C -0.207 4.207
17 C -0.076 4.076
18 C 0.186 3.814
19 H 0.032 0.968
20 O -0.360 6.360
21 C -0.623 4.623
22 H 0.070 0.930
23 C -0.174 4.174
24 N -0.534 5.534
25 Si 0.778 3.222
26 H -0.190 1.190
27 H -0.206 1.206
28 H -0.205 1.205
29 H 0.068 0.932
30 H 0.076 0.924
31 H 0.084 0.916
32 H 0.069 0.931
33 H 0.067 0.933
34 H 0.101 0.899
35 H 0.101 0.899
36 H 0.107 0.893
37 H 0.106 0.894
38 H 0.125 0.875
39 H 0.127 0.873
40 H 0.145 0.855
41 H 0.153 0.847
42 H 0.151 0.849
43 H 0.067 0.933
44 H 0.054 0.946
45 H 0.074 0.926
46 H 0.106 0.894
47 H 0.078 0.922
48 H 0.058 0.942
49 H 0.088 0.912
50 H 0.069 0.931
51 H 0.049 0.951
52 H 0.185 0.815
53 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges -9.139 14.008 -8.753 18.877
hybrid contribution 0.082 -2.155 -0.228 2.169
sum -9.056 11.853 -8.981 17.412
Atomic orbital electron populations
1.21712 0.94509 1.01599 1.02290 1.21788 0.97018 0.97299 1.01051
1.22365 0.95375 0.96810 1.03885 1.21764 0.92274 0.95298 0.92518
0.92309 1.20998 0.90940 0.95925 1.03509 1.19858 0.96040 0.98521
0.92795 1.20964 0.92896 0.97581 0.98933 1.21245 0.96042 1.00906
0.97244 1.21260 1.00225 1.01417 0.92720 1.21289 0.93538 1.00987
0.99299 1.21254 0.95834 1.01469 0.96501 1.62088 1.46775 1.11966
1.02764 1.22283 0.95541 0.97300 0.92691 1.21848 1.00766 0.94627
0.98326 1.21746 1.00208 1.01999 0.96729 1.22737 0.98095 0.87719
0.99005 1.19071 0.81684 0.88181 0.92452 0.96798 1.86516 1.37989
1.74194 1.37293 1.22104 1.28707 0.96450 1.15074 0.92976 1.25815
0.95014 1.02225 0.94317 1.70227 1.28756 1.37197 1.17221 0.85621
0.77946 0.80439 0.78218 1.18963 1.20581 1.20494 0.93196 0.92442
0.91600 0.93078 0.93344 0.89872 0.89895 0.89322 0.89352 0.87543
0.87269 0.85493 0.84658 0.84860 0.93302 0.94585 0.92567 0.89356
0.92173 0.94238 0.91173 0.93123 0.95095 0.81467 0.93213
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.79 9.91 71.98 0.71 -2.08 16
2 C -0.13 -3.24 4.54 30.60 0.14 -3.10 16
3 C -0.15 -3.12 3.96 30.59 0.12 -3.00 16
4 C 0.09 2.35 1.83 44.91 0.08 2.43 16
5 H 0.06 1.69 7.41 -2.39 -0.02 1.67 16
6 C -0.08 -1.75 4.67 29.85 0.14 -1.61 16
7 C -0.07 -1.98 5.01 -19.87 -0.10 -2.08 16
8 C -0.09 -2.73 9.10 22.27 0.20 -2.53 16
9 C -0.14 -4.29 10.05 22.27 0.22 -4.06 16
10 C -0.14 -3.80 10.05 22.27 0.22 -3.57 16
11 C -0.13 -3.31 10.05 22.27 0.22 -3.09 16
12 C -0.13 -3.30 9.68 22.27 0.22 -3.09 16
13 N -0.51 -16.99 3.41 -870.99 -2.97 -19.96 16
14 C 0.05 1.58 4.12 86.31 0.36 1.93 16
15 C -0.12 -2.99 4.08 30.60 0.12 -2.86 16
16 C -0.15 -3.32 9.91 71.98 0.71 -2.60 16
17 C 0.05 2.14 4.01 86.31 0.35 2.49 16
18 C 0.24 12.62 2.84 29.85 0.08 12.71 16
19 H 0.01 0.83 6.65 -2.39 -0.02 0.82 16
20 O -0.56 -29.74 12.59 -148.98 -1.87 -31.62 16
21 C -0.58 -32.77 8.76 25.60 0.22 -32.55 16
22 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16
23 C 0.03 1.63 5.40 84.66 0.46 2.09 16
24 N -0.90 -54.61 12.83 21.45 0.28 -54.34 16
25 Si 0.95 44.36 29.54 68.60 2.03 46.39 16
26 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16
27 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16
28 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16
29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16
30 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16
31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16
32 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16
33 H 0.05 1.44 4.19 -2.39 -0.01 1.43 16
34 H 0.08 1.73 4.35 -2.39 -0.01 1.72 16
35 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16
36 H 0.09 1.58 8.05 -2.39 -0.02 1.56 16
37 H 0.09 1.98 4.39 -2.39 -0.01 1.96 16
38 H 0.11 3.73 6.79 -2.91 -0.02 3.71 16
39 H 0.11 3.43 8.06 -2.91 -0.02 3.41 16
40 H 0.13 2.97 8.06 -2.91 -0.02 2.94 16
41 H 0.14 2.63 8.06 -2.91 -0.02 2.60 16
42 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16
43 H 0.05 1.45 4.33 -2.39 -0.01 1.44 16
44 H 0.04 1.43 6.48 -2.39 -0.02 1.42 16
45 H 0.06 1.60 6.67 -2.39 -0.02 1.59 16
46 H 0.09 1.85 4.25 -2.39 -0.01 1.84 16
47 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16
48 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16
49 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16
50 H 0.05 2.11 7.60 -2.39 -0.02 2.09 16
51 H 0.03 1.27 5.38 -2.39 -0.01 1.25 16
52 H 0.34 17.30 9.04 -74.05 -0.67 16.63 16
53 H 0.26 14.94 8.31 -92.71 -0.77 14.16 16
Total: -1.00 -64.71 396.66 2.17 -62.54
By element:
Atomic # 1 Polarization: 41.33 SS G_CDS: 0.22 Total: 41.56 kcal
Atomic # 6 Polarization: -49.06 SS G_CDS: 4.49 Total: -44.57 kcal
Atomic # 7 Polarization: -71.60 SS G_CDS: -2.70 Total: -74.30 kcal
Atomic # 8 Polarization: -29.74 SS G_CDS: -1.87 Total: -31.62 kcal
Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal
Total: -64.71 2.17 -62.54 kcal
The number of atoms in the molecule is 53
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001459431052.mol2 53
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.123 kcal
(2) G-P(sol) polarization free energy of solvation -64.706 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.583 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.536 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.413 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds