Wall clock time and date at job start Tue Mar 31 2020 13:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46494 * 120.00190 * 2 1 4 4 C 1.50708 * 109.47029 * 270.00105 * 3 2 1 5 5 H 1.07993 * 119.99770 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99847 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00064 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99748 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47249 * 59.99954 * 8 6 4 10 10 H 1.48501 * 109.46768 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46907 * 299.99736 * 8 6 4 12 12 C 1.39676 * 119.99761 * 179.97438 * 2 1 3 13 13 C 1.38915 * 120.07408 * 359.97438 * 12 2 1 14 14 C 1.38101 * 119.92378 * 179.97438 * 13 12 2 15 15 C 1.38282 * 120.07414 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.92410 * 179.97438 * 15 14 13 17 17 N 1.46906 * 109.46899 * 90.00247 * 16 15 14 18 18 C 1.46905 * 110.99944 * 179.97438 * 17 16 15 19 19 H 1.09002 * 109.47085 * 325.00046 * 18 17 16 20 20 C 1.52997 * 109.46913 * 84.99934 * 18 17 16 21 21 N 1.46903 * 109.47119 * 305.00041 * 20 18 17 22 22 C 1.52992 * 109.46996 * 205.00169 * 18 17 16 23 23 C 1.52997 * 109.47482 * 60.00113 * 22 18 17 24 24 C 1.53006 * 109.47223 * 299.99825 * 22 18 17 25 25 C 1.52999 * 109.46961 * 180.02562 * 22 18 17 26 26 C 1.38281 * 120.15235 * 0.27451 * 15 14 13 27 27 C 1.38113 * 120.07255 * 359.45213 * 26 15 14 28 28 H 1.08995 * 109.46846 * 270.00359 * 1 2 3 29 29 H 1.08997 * 109.46684 * 29.99708 * 1 2 3 30 30 H 1.08994 * 109.47538 * 149.99937 * 1 2 3 31 31 H 1.08998 * 109.47156 * 30.00103 * 3 2 1 32 32 H 1.08998 * 109.47207 * 149.99953 * 3 2 1 33 33 H 0.97002 * 120.00491 * 180.02562 * 7 6 4 34 34 H 1.08004 * 120.03453 * 359.95637 * 13 12 2 35 35 H 1.08003 * 119.96189 * 179.97438 * 14 13 12 36 36 H 1.09001 * 109.47445 * 330.00271 * 16 15 14 37 37 H 1.09004 * 109.47429 * 210.00131 * 16 15 14 38 38 H 1.00901 * 110.99756 * 56.05044 * 17 16 15 39 39 H 1.09003 * 109.47101 * 64.99691 * 20 18 17 40 40 H 1.09002 * 109.47196 * 184.99956 * 20 18 17 41 41 H 1.00903 * 110.99678 * 179.97438 * 21 20 18 42 42 H 1.00893 * 111.00224 * 303.94789 * 21 20 18 43 43 H 1.09002 * 109.47153 * 59.99783 * 23 22 18 44 44 H 1.09001 * 109.46832 * 299.99974 * 23 22 18 45 45 H 1.09004 * 109.47261 * 179.97438 * 23 22 18 46 46 H 1.08993 * 109.46955 * 180.02562 * 24 22 18 47 47 H 1.09000 * 109.47050 * 300.00346 * 24 22 18 48 48 H 1.09001 * 109.47002 * 60.00080 * 24 22 18 49 49 H 1.09002 * 109.46716 * 299.99630 * 25 22 18 50 50 H 1.09000 * 109.47486 * 59.99547 * 25 22 18 51 51 H 1.09001 * 109.47362 * 180.02562 * 25 22 18 52 52 H 1.08003 * 119.96682 * 179.70503 * 26 15 14 53 53 H 1.08000 * 120.03739 * 180.27053 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0974 1.0961 -2.2417 6 6 3.1270 2.8774 -1.6728 7 7 3.5544 3.6175 -0.6732 8 14 3.4377 3.4169 -3.4340 9 1 2.1399 3.5954 -4.1333 10 1 4.1803 4.7029 -3.4340 11 1 4.2394 2.3818 -4.1347 12 6 2.1634 -1.2097 0.0005 13 6 1.4703 -2.4136 0.0016 14 6 2.1639 -3.6078 0.0016 15 6 3.5467 -3.6060 0.0000 16 6 4.3002 -4.9111 0.0006 17 7 4.5434 -5.3367 -1.3843 18 6 5.2781 -6.6083 -1.4229 19 1 5.9825 -6.6463 -0.5920 20 6 4.2908 -7.7714 -1.3083 21 7 3.4743 -7.6031 -0.0987 22 6 6.0419 -6.7159 -2.7442 23 6 7.0293 -5.5528 -2.8589 24 6 5.0532 -6.6625 -3.9107 25 6 6.8066 -8.0405 -2.7847 26 6 4.2398 -2.4094 0.0041 27 6 3.5524 -1.2115 -0.0016 28 1 -0.3633 0.0001 1.0276 29 1 -0.3632 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 1.6085 2.0283 0.5138 32 1 3.1500 1.1383 0.5138 33 1 4.0312 4.4434 -0.8504 34 1 0.3903 -2.4156 0.0027 35 1 1.6257 -4.5441 0.0029 36 1 3.7117 -5.6702 0.5159 37 1 5.2532 -4.7803 0.5132 38 1 5.0319 -4.6214 -1.9018 39 1 3.6430 -7.7858 -2.1848 40 1 4.8410 -8.7104 -1.2476 41 1 2.8134 -8.3593 -0.0006 42 1 4.0559 -7.5221 0.7218 43 1 7.7336 -5.5908 -2.0279 44 1 6.4841 -4.6093 -2.8302 45 1 7.5737 -5.6298 -3.8001 46 1 5.5973 -6.7397 -4.8519 47 1 4.3498 -7.4912 -3.8290 48 1 4.5081 -5.7191 -3.8820 49 1 7.5109 -8.0789 -1.9537 50 1 6.1029 -8.8690 -2.7032 51 1 7.3511 -8.1171 -3.7259 52 1 5.3198 -2.4115 0.0077 53 1 4.0943 -0.2773 -0.0028 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578461511.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:50 Heat of formation + Delta-G solvation = 28.452367 kcal Electronic energy + Delta-G solvation = -27440.997010 eV Core-core repulsion = 23926.125444 eV Total energy + Delta-G solvation = -3514.871566 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.232 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.45451 -38.68029 -35.93225 -34.52601 -33.28969 -32.54689 -30.31135 -29.70337 -27.95847 -27.73087 -27.44125 -26.74265 -25.05910 -23.66111 -22.20182 -21.86838 -21.32192 -19.53657 -18.70210 -16.67331 -16.47429 -16.16093 -15.78131 -15.37769 -15.06700 -14.77172 -14.55118 -14.16332 -14.09026 -13.67221 -13.57620 -13.44249 -13.32461 -12.90696 -12.73779 -12.57787 -12.49118 -12.17171 -12.09760 -11.95548 -11.71571 -11.56575 -11.48649 -11.31539 -11.18589 -11.02735 -10.88498 -10.74510 -10.61131 -10.57512 -10.32919 -10.21091 -9.81286 -9.68452 -8.76430 -8.66226 -8.46976 -8.14770 -8.02819 -6.38178 -5.96099 -4.13712 2.23658 2.37736 3.30374 3.34313 3.38166 4.21269 4.27820 4.29494 4.45284 4.55462 4.71150 4.77241 4.81964 5.19218 5.22398 5.24804 5.27056 5.38237 5.45556 5.49762 5.51762 5.56907 5.61300 5.71308 5.74646 5.76632 5.81331 5.87466 5.91542 5.97893 6.01468 6.10525 6.16783 6.20267 6.23858 6.32247 6.37148 6.53217 6.57991 6.79311 6.98068 7.05509 7.15004 7.28029 7.29309 7.33836 7.39274 7.45335 7.69491 7.74697 7.84939 8.20385 8.34840 8.58241 8.95726 9.52899 10.99046 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.013818 B = 0.003005 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.842239 B = 9314.455613 C =10633.237051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.618 5.618 3 C 0.250 3.750 4 C -0.530 4.530 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.239 3.761 13 C -0.224 4.224 14 C -0.047 4.047 15 C -0.166 4.166 16 C 0.107 3.893 17 N -0.664 5.664 18 C 0.099 3.901 19 H 0.034 0.966 20 C 0.072 3.928 21 N -0.836 5.836 22 C -0.070 4.070 23 C -0.148 4.148 24 C -0.137 4.137 25 C -0.142 4.142 26 C -0.072 4.072 27 C -0.189 4.189 28 H 0.034 0.966 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.029 0.971 32 H 0.035 0.965 33 H 0.264 0.736 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.013 0.987 38 H 0.335 0.665 39 H 0.080 0.920 40 H 0.021 0.979 41 H 0.335 0.665 42 H 0.334 0.666 43 H 0.052 0.948 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.047 0.953 47 H 0.055 0.945 48 H 0.069 0.931 49 H 0.051 0.949 50 H 0.056 0.944 51 H 0.055 0.945 52 H 0.104 0.896 53 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.415 -23.082 -0.199 23.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.324 5.324 3 C 0.130 3.870 4 C -0.569 4.569 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.132 3.868 13 C -0.247 4.247 14 C -0.066 4.066 15 C -0.169 4.169 16 C -0.021 4.021 17 N -0.297 5.297 18 C -0.012 4.012 19 H 0.052 0.948 20 C -0.060 4.060 21 N -0.365 5.365 22 C -0.071 4.071 23 C -0.205 4.205 24 C -0.195 4.195 25 C -0.200 4.200 26 C -0.092 4.092 27 C -0.212 4.212 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.121 0.879 37 H 0.031 0.969 38 H 0.156 0.844 39 H 0.098 0.902 40 H 0.039 0.961 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.066 0.934 47 H 0.074 0.926 48 H 0.088 0.912 49 H 0.070 0.930 50 H 0.075 0.925 51 H 0.075 0.925 52 H 0.122 0.878 53 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.523 -22.300 -0.566 22.449 hybrid contribution 1.563 -0.038 -0.489 1.638 sum 4.086 -22.338 -1.055 22.733 Atomic orbital electron populations 1.21450 0.81615 1.01846 0.99571 1.47059 1.04289 1.04605 1.76439 1.19250 0.92040 0.78843 0.96858 1.21567 1.36254 1.06361 0.92729 0.92308 1.24960 0.95465 0.96303 0.97352 1.69921 1.38425 1.14394 1.30798 0.86586 0.78439 0.77814 0.84800 1.20240 1.21226 1.20102 1.17936 0.91451 0.85952 0.91411 1.20593 0.98928 0.91521 1.13690 1.20525 0.93317 0.96432 0.96361 1.19254 0.93738 0.93421 1.10461 1.21032 0.97032 0.95121 0.88917 1.60514 1.51024 1.03899 1.14300 1.21504 0.92709 0.91620 0.95377 0.94767 1.21980 0.95087 0.94788 0.94096 1.58785 1.21520 1.51326 1.04910 1.20660 0.95352 0.95588 0.95455 1.21946 0.98721 0.98083 1.01799 1.21854 0.98387 1.03093 0.96119 1.21919 0.99832 0.96549 1.01659 1.20679 0.98258 0.91945 0.98310 1.20814 0.92712 0.98577 1.09068 0.94748 0.91593 0.92686 0.95321 0.94707 0.92641 0.87114 0.87009 0.87941 0.96900 0.84380 0.90168 0.96059 0.85285 0.85369 0.92898 0.91944 0.92285 0.93386 0.92597 0.91217 0.92961 0.92452 0.92545 0.87831 0.85375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.81 10.19 59.85 0.61 2.42 16 2 N -0.62 -13.66 2.99 -181.00 -0.54 -14.20 16 3 C 0.25 6.41 4.91 -5.19 -0.03 6.39 16 4 C -0.53 -14.73 9.39 -34.44 -0.32 -15.06 16 5 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 7 N -0.90 -26.00 13.29 55.43 0.74 -25.26 16 8 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.24 5.02 6.55 -83.79 -0.55 4.47 16 13 C -0.22 -4.11 9.21 -39.38 -0.36 -4.47 16 14 C -0.05 -0.78 9.69 -39.62 -0.38 -1.17 16 15 C -0.17 -2.68 5.39 -104.59 -0.56 -3.24 16 16 C 0.11 1.40 5.41 -4.97 -0.03 1.38 16 17 N -0.66 -8.03 5.53 -107.99 -0.60 -8.63 16 18 C 0.10 0.95 1.72 -67.72 -0.12 0.84 16 19 H 0.03 0.35 7.80 -51.93 -0.40 -0.06 16 20 C 0.07 0.63 5.76 -3.82 -0.02 0.61 16 21 N -0.84 -7.18 7.27 -10.37 -0.08 -7.26 16 22 C -0.07 -0.60 0.57 -154.51 -0.09 -0.69 16 23 C -0.15 -1.34 8.24 37.16 0.31 -1.03 16 24 C -0.14 -1.27 7.97 37.16 0.30 -0.97 16 25 C -0.14 -1.03 8.12 37.16 0.30 -0.73 16 26 C -0.07 -1.29 9.69 -39.61 -0.38 -1.67 16 27 C -0.19 -3.96 9.21 -39.38 -0.36 -4.32 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 30 H 0.05 0.90 6.20 -51.93 -0.32 0.58 16 31 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 32 H 0.04 0.94 6.20 -51.93 -0.32 0.62 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.11 1.85 6.14 -52.48 -0.32 1.53 16 35 H 0.11 1.69 8.06 -52.48 -0.42 1.26 16 36 H 0.10 1.28 5.00 -51.93 -0.26 1.02 16 37 H 0.01 0.17 7.99 -51.93 -0.42 -0.25 16 38 H 0.34 4.32 6.00 -39.29 -0.24 4.08 16 39 H 0.08 0.79 6.17 -51.93 -0.32 0.47 16 40 H 0.02 0.16 6.71 -51.93 -0.35 -0.18 16 41 H 0.33 2.35 9.08 -39.29 -0.36 1.99 16 42 H 0.33 2.62 8.17 -39.30 -0.32 2.30 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.63 6.21 -51.93 -0.32 0.31 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.49 6.32 -51.93 -0.33 0.17 16 48 H 0.07 0.77 7.48 -51.93 -0.39 0.38 16 49 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.06 0.39 6.54 -51.93 -0.34 0.05 16 51 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 52 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 53 H 0.13 2.95 6.14 -52.49 -0.32 2.63 16 LS Contribution 402.82 15.07 6.07 6.07 Total: -1.00 -29.21 402.82 -10.32 -39.53 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -9.10 Total: 8.84 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -1.79 Total: -15.64 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.48 Total: -55.35 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -29.21 -10.32 -39.53 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578461511.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.979 kcal (2) G-P(sol) polarization free energy of solvation -29.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds