Wall clock time and date at job start Tue Mar 31 2020 13:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99640 * 2 1 4 4 H 1.48501 * 109.46699 * 240.00066 * 3 2 1 5 5 H 1.48498 * 109.47237 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46788 * 120.00460 * 3 2 1 7 7 C 1.38811 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00170 * 155.73384 * 7 2 1 9 9 N 1.36936 * 119.99891 * 336.00971 * 7 2 1 10 10 C 1.46501 * 120.00332 * 343.16824 * 9 7 2 11 11 C 1.50704 * 109.47260 * 96.09517 * 10 9 7 12 12 O 1.20833 * 119.99617 * 0.02562 * 11 10 9 13 13 O 1.34229 * 120.00160 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00010 * 163.16181 * 9 7 2 15 15 C 1.50706 * 109.46469 * 90.00144 * 14 9 7 16 16 N 1.31805 * 122.76226 * 90.02983 * 15 14 9 17 17 C 1.29005 * 117.13372 * 179.97438 * 16 15 14 18 18 S 1.70970 * 110.18727 * 359.97438 * 17 16 15 19 19 C 1.33731 * 122.76262 * 269.73035 * 15 14 9 20 20 Br 1.89101 * 126.04503 * 0.04409 * 19 15 14 21 21 H 0.97001 * 120.00520 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.47361 * 216.10042 * 10 9 7 23 23 H 1.09000 * 109.46589 * 336.10007 * 10 9 7 24 24 H 0.96697 * 117.00000 * 180.02562 * 13 11 10 25 25 H 1.08993 * 109.47494 * 209.99998 * 14 9 7 26 26 H 1.09004 * 109.47226 * 330.00667 * 14 9 7 27 27 H 1.07998 * 124.90613 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0187 -1.2433 -0.3849 9 7 1.4143 -2.3370 0.4811 10 6 0.2186 -2.2363 1.3216 11 6 -1.0112 -2.4132 0.4688 12 8 -0.9003 -2.6043 -0.7192 13 8 -2.2299 -2.3585 1.0289 14 6 1.9724 -3.6520 0.1558 15 6 2.9835 -4.0414 1.2032 16 7 2.6615 -4.7126 2.2909 17 6 3.6143 -4.9893 3.1153 18 16 5.0983 -4.3746 2.5296 19 6 4.2825 -3.7396 1.1028 20 35 5.0988 -2.7954 -0.3178 21 1 -0.4851 0.8400 0.0004 22 1 0.2454 -3.0128 2.0861 23 1 0.1918 -1.2569 1.7992 24 1 -2.9887 -2.4780 0.4415 25 1 1.1714 -4.3907 0.1316 26 1 2.4574 -3.6097 -0.8194 27 1 3.4923 -5.5309 4.0417 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072480.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:58 Heat of formation + Delta-G solvation = -9.414818 kcal Electronic energy + Delta-G solvation = -17334.115994 eV Core-core repulsion = 14266.610585 eV Total energy + Delta-G solvation = -3067.505409 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 319.962 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.59989 -38.62761 -35.68648 -34.37518 -32.25894 -31.29360 -29.29764 -27.31369 -26.00900 -24.44791 -22.35233 -20.19120 -18.98551 -18.06712 -16.72877 -16.60650 -15.57953 -15.32481 -14.99120 -14.34820 -14.11536 -13.52488 -13.25610 -13.15722 -12.95893 -12.00995 -11.72563 -11.42655 -11.10502 -10.93499 -10.82803 -10.58636 -10.38072 -10.17674 -9.96273 -9.66540 -9.34547 -9.20447 -8.95432 -8.57445 -8.42254 -7.13299 -5.93652 -3.25319 0.78617 1.16344 1.77676 2.13666 3.02134 3.36387 3.42695 3.44705 3.90501 4.32617 4.49379 4.58524 5.24130 5.39538 5.41999 5.55154 6.20530 6.33629 6.47518 6.57393 6.93275 6.98041 7.76662 7.86893 7.92088 8.14365 9.00504 9.43816 9.68367 10.10356 11.17728 Molecular weight = 319.96amu Principal moments of inertia in cm(-1) A = 0.014268 B = 0.007480 C = 0.005655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.899367 B = 3742.509011 C = 4950.329642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.005 3.995 3 Si 0.901 3.099 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.264 4.264 8 H 0.094 0.906 9 N -0.549 5.549 10 C 0.189 3.811 11 C 0.479 3.521 12 O -0.514 6.514 13 O -0.543 6.543 14 C 0.207 3.793 15 C 0.105 3.895 16 N -0.454 5.454 17 C 0.027 3.973 18 S 0.122 5.878 19 C -0.228 4.228 20 Br 0.030 6.970 21 H 0.257 0.743 22 H 0.058 0.942 23 H 0.110 0.890 24 H 0.381 0.619 25 H 0.062 0.938 26 H 0.079 0.921 27 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.974 -8.796 5.178 13.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.193 4.193 3 Si 0.730 3.270 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.392 4.392 8 H 0.111 0.889 9 N -0.267 5.267 10 C 0.059 3.941 11 C 0.319 3.681 12 O -0.399 6.399 13 O -0.354 6.354 14 C 0.076 3.924 15 C -0.032 4.032 16 N -0.169 5.169 17 C -0.272 4.272 18 S 0.372 5.628 19 C -0.428 4.428 20 Br 0.113 6.887 21 H 0.068 0.932 22 H 0.076 0.924 23 H 0.127 0.873 24 H 0.237 0.763 25 H 0.081 0.919 26 H 0.097 0.903 27 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 10.020 -8.471 5.074 14.068 hybrid contribution -0.982 1.024 -0.657 1.563 sum 9.038 -7.447 4.417 12.516 Atomic orbital electron populations 1.69921 1.05288 1.26003 1.53021 1.24831 0.95086 0.98504 1.00915 0.86364 0.79112 0.83159 0.78336 1.20734 1.21637 1.20836 1.19573 0.97150 0.84772 1.37729 0.88890 1.43828 1.26042 1.00859 1.55940 1.20202 0.81229 1.02517 0.90106 1.25153 0.83707 0.70163 0.89123 1.90511 1.86480 1.45538 1.17388 1.84623 1.17551 1.86287 1.46927 1.19500 0.92673 0.88524 0.91700 1.21974 0.93041 0.93011 0.95211 1.66402 1.33666 1.14022 1.02790 1.28459 0.91426 1.03712 1.03621 1.83809 1.14296 1.50479 1.14212 1.27444 0.98674 1.14262 1.02441 1.96664 1.78704 1.73146 1.40212 0.93250 0.92412 0.87259 0.76329 0.91938 0.90292 0.78412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.34 9.41 55.49 0.52 -24.82 15 2 C 0.01 0.14 4.80 -17.43 -0.08 0.06 15 3 Si 0.90 21.50 29.62 -169.99 -5.03 16.47 15 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 15 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 7 C -0.26 -6.88 9.64 -15.06 -0.15 -7.02 15 8 H 0.09 2.33 5.80 -52.49 -0.30 2.02 15 9 N -0.55 -13.29 2.01 -175.98 -0.35 -13.65 15 10 C 0.19 4.46 5.49 -5.19 -0.03 4.44 15 11 C 0.48 11.61 6.55 36.01 0.24 11.84 15 12 O -0.51 -14.05 16.82 -18.76 -0.32 -14.37 15 13 O -0.54 -11.19 13.42 -39.26 -0.53 -11.72 15 14 C 0.21 4.37 5.80 -5.19 -0.03 4.34 15 15 C 0.11 1.96 6.33 -84.18 -0.53 1.43 15 16 N -0.45 -7.77 10.53 -11.88 -0.13 -7.90 15 17 C 0.03 0.35 12.23 51.58 0.63 0.98 15 18 S 0.12 1.58 23.22 -107.50 -2.50 -0.91 15 19 C -0.23 -3.87 7.05 29.15 0.21 -3.66 15 20 Br 0.03 0.49 31.03 -68.01 -2.11 -1.62 15 21 H 0.26 7.17 8.31 -40.82 -0.34 6.83 15 22 H 0.06 1.24 8.12 -51.93 -0.42 0.82 15 23 H 0.11 2.78 6.45 -51.93 -0.34 2.45 15 24 H 0.38 6.23 9.10 45.56 0.41 6.65 15 25 H 0.06 1.31 8.07 -51.93 -0.42 0.90 15 26 H 0.08 1.67 7.25 -51.93 -0.38 1.30 15 27 H 0.20 1.74 8.06 -52.49 -0.42 1.31 15 LS Contribution 276.42 15.07 4.17 4.17 Total: -1.00 -31.78 276.42 -7.02 -38.81 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -1.00 Total: 3.14 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: 0.25 Total: 12.40 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.04 Total: -46.36 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.84 Total: -26.08 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.50 Total: -0.91 kcal Atomic # 35 Polarization: 0.49 SS G_CDS: -2.11 Total: -1.62 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.78 -7.02 -38.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072480.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.392 kcal (2) G-P(sol) polarization free energy of solvation -31.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds