Wall clock time and date at job start Tue Mar 31 2020 13:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99640 * 2 1 4 4 H 1.48501 * 109.46699 * 240.00066 * 3 2 1 5 5 H 1.48498 * 109.47237 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46788 * 120.00460 * 3 2 1 7 7 C 1.38811 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00170 * 155.73384 * 7 2 1 9 9 N 1.36936 * 119.99891 * 336.00971 * 7 2 1 10 10 C 1.46501 * 120.00332 * 343.16824 * 9 7 2 11 11 C 1.50704 * 109.47260 * 96.09517 * 10 9 7 12 12 O 1.20833 * 119.99617 * 0.02562 * 11 10 9 13 13 O 1.34229 * 120.00160 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00010 * 163.16181 * 9 7 2 15 15 C 1.50706 * 109.46469 * 90.00144 * 14 9 7 16 16 N 1.31805 * 122.76226 * 90.02983 * 15 14 9 17 17 C 1.29005 * 117.13372 * 179.97438 * 16 15 14 18 18 S 1.70970 * 110.18727 * 359.97438 * 17 16 15 19 19 C 1.33731 * 122.76262 * 269.73035 * 15 14 9 20 20 Br 1.89101 * 126.04503 * 0.04409 * 19 15 14 21 21 H 0.97001 * 120.00520 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.47361 * 216.10042 * 10 9 7 23 23 H 1.09000 * 109.46589 * 336.10007 * 10 9 7 24 24 H 0.96697 * 117.00000 * 180.02562 * 13 11 10 25 25 H 1.08993 * 109.47494 * 209.99998 * 14 9 7 26 26 H 1.09004 * 109.47226 * 330.00667 * 14 9 7 27 27 H 1.07998 * 124.90613 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0187 -1.2433 -0.3849 9 7 1.4143 -2.3370 0.4811 10 6 0.2186 -2.2363 1.3216 11 6 -1.0112 -2.4132 0.4688 12 8 -0.9003 -2.6043 -0.7192 13 8 -2.2299 -2.3585 1.0289 14 6 1.9724 -3.6520 0.1558 15 6 2.9835 -4.0414 1.2032 16 7 2.6615 -4.7126 2.2909 17 6 3.6143 -4.9893 3.1153 18 16 5.0983 -4.3746 2.5296 19 6 4.2825 -3.7396 1.1028 20 35 5.0988 -2.7954 -0.3178 21 1 -0.4851 0.8400 0.0004 22 1 0.2454 -3.0128 2.0861 23 1 0.1918 -1.2569 1.7992 24 1 -2.9887 -2.4780 0.4415 25 1 1.1714 -4.3907 0.1316 26 1 2.4574 -3.6097 -0.8194 27 1 3.4923 -5.5309 4.0417 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601072480.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:58 Heat of formation + Delta-G solvation = -31.167099 kcal Electronic energy + Delta-G solvation = -17335.059244 eV Core-core repulsion = 14266.610585 eV Total energy + Delta-G solvation = -3068.448659 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 319.962 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.94266 -40.43507 -37.46126 -36.25086 -33.80946 -32.93222 -30.78969 -29.08175 -27.62883 -25.76061 -24.14049 -21.99813 -20.33364 -19.41316 -18.55998 -18.40472 -17.21028 -17.02412 -16.51521 -16.01289 -15.85430 -15.29400 -14.84581 -14.65407 -14.20447 -13.58836 -13.42405 -13.23956 -12.77955 -12.61960 -12.54256 -12.27031 -12.07726 -11.94853 -11.86658 -11.19409 -11.06371 -10.62082 -10.48030 -10.08415 -9.71540 -9.03599 -7.94275 -5.26382 -0.38629 -0.00549 0.59174 0.95002 1.46916 1.49672 1.55673 1.73921 2.00044 2.51621 2.76293 3.22544 3.42147 3.62265 4.09491 4.29517 4.61412 4.68540 4.85916 5.04219 5.08942 5.19401 5.76139 6.12790 6.20798 6.72870 7.03078 7.59219 7.77864 8.16259 9.15760 Molecular weight = 319.96amu Principal moments of inertia in cm(-1) A = 0.014268 B = 0.007480 C = 0.005655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.899367 B = 3742.509011 C = 4950.329642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.047 4.047 3 Si 0.954 3.046 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.276 1.276 7 C -0.259 4.259 8 H 0.100 0.900 9 N -0.563 5.563 10 C 0.193 3.807 11 C 0.483 3.517 12 O -0.551 6.551 13 O -0.534 6.534 14 C 0.211 3.789 15 C 0.092 3.908 16 N -0.489 5.489 17 C 0.039 3.961 18 S 0.199 5.801 19 C -0.257 4.257 20 Br 0.022 6.978 21 H 0.248 0.752 22 H 0.078 0.922 23 H 0.090 0.910 24 H 0.402 0.598 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.442 -9.691 6.886 15.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.242 4.242 3 Si 0.783 3.217 4 H -0.205 1.205 5 H -0.224 1.224 6 H -0.202 1.202 7 C -0.388 4.388 8 H 0.118 0.882 9 N -0.282 5.282 10 C 0.064 3.936 11 C 0.324 3.676 12 O -0.440 6.440 13 O -0.345 6.345 14 C 0.082 3.918 15 C -0.046 4.046 16 N -0.204 5.204 17 C -0.259 4.259 18 S 0.451 5.549 19 C -0.458 4.458 20 Br 0.105 6.895 21 H 0.058 0.942 22 H 0.096 0.904 23 H 0.108 0.892 24 H 0.260 0.740 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 11.512 -9.399 6.808 16.347 hybrid contribution -1.382 1.140 -1.097 2.101 sum 10.130 -8.259 5.711 14.263 Atomic orbital electron populations 1.70054 1.06303 1.25649 1.55320 1.25471 0.95742 1.00993 1.01991 0.85519 0.77843 0.79946 0.78397 1.20504 1.22421 1.20175 1.19913 0.97314 0.85447 1.36114 0.88249 1.43965 1.26486 1.01509 1.56202 1.20138 0.81139 1.01969 0.90358 1.25255 0.84728 0.69060 0.88547 1.90489 1.87221 1.47455 1.18876 1.84546 1.17425 1.85563 1.47001 1.19374 0.92932 0.87029 0.92498 1.21349 0.92903 0.94787 0.95556 1.66356 1.35339 1.15508 1.03217 1.29245 0.90895 1.01869 1.03880 1.83561 1.12527 1.48373 1.10487 1.27603 0.99272 1.14628 1.04259 1.96641 1.78377 1.73408 1.41061 0.94244 0.90413 0.89216 0.73962 0.92737 0.91269 0.73928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.16 9.41 21.65 0.20 -52.96 15 2 C -0.05 -2.55 4.80 84.86 0.41 -2.14 15 3 Si 0.95 44.46 29.62 68.60 2.03 46.49 15 4 H -0.28 -12.75 7.11 99.48 0.71 -12.05 15 5 H -0.30 -14.10 7.11 99.48 0.71 -13.39 15 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 15 7 C -0.26 -13.54 9.64 84.03 0.81 -12.73 15 8 H 0.10 4.96 5.80 -2.91 -0.02 4.95 15 9 N -0.56 -27.41 2.01 -710.68 -1.43 -28.84 15 10 C 0.19 9.18 5.49 85.63 0.47 9.65 15 11 C 0.48 23.53 6.55 71.24 0.47 23.99 15 12 O -0.55 -30.64 16.82 21.94 0.37 -30.28 15 13 O -0.53 -21.62 13.42 -51.41 -0.69 -22.31 15 14 C 0.21 8.97 5.80 85.63 0.50 9.47 15 15 C 0.09 3.31 6.33 41.54 0.26 3.57 15 16 N -0.49 -15.66 10.53 -191.49 -2.02 -17.67 15 17 C 0.04 0.87 12.23 130.66 1.60 2.46 15 18 S 0.20 4.46 23.22 -56.49 -1.31 3.15 15 19 C -0.26 -8.28 7.05 66.80 0.47 -7.81 15 20 Br 0.02 0.71 31.03 -20.37 -0.63 0.08 15 21 H 0.25 14.13 8.31 -92.71 -0.77 13.36 15 22 H 0.08 3.31 8.12 -2.39 -0.02 3.29 15 23 H 0.09 4.63 6.45 -2.39 -0.02 4.62 15 24 H 0.40 12.74 9.10 -74.06 -0.67 12.06 15 25 H 0.05 2.34 8.07 -2.39 -0.02 2.32 15 26 H 0.07 2.99 7.25 -2.38 -0.02 2.98 15 27 H 0.24 2.93 8.06 -2.91 -0.02 2.91 15 Total: -1.00 -68.59 276.42 2.07 -66.53 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 0.56 Total: 9.34 kcal Atomic # 6 Polarization: 21.49 SS G_CDS: 4.98 Total: 26.47 kcal Atomic # 7 Polarization: -96.23 SS G_CDS: -3.24 Total: -99.47 kcal Atomic # 8 Polarization: -52.27 SS G_CDS: -0.32 Total: -52.59 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: 4.46 SS G_CDS: -1.31 Total: 3.15 kcal Atomic # 35 Polarization: 0.71 SS G_CDS: -0.63 Total: 0.08 kcal Total: -68.59 2.07 -66.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072480.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.359 kcal (2) G-P(sol) polarization free energy of solvation -68.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds