Wall clock time and date at job start Tue Mar 31 2020 12:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46890 * 2 1 4 4 H 1.09001 * 109.47283 * 55.00070 * 3 2 1 5 5 C 1.52997 * 109.47024 * 294.99748 * 3 2 1 6 6 C 1.50700 * 109.46633 * 175.00089 * 3 2 1 7 7 C 1.38243 * 119.99352 * 239.99857 * 6 3 2 8 8 C 1.38229 * 119.99466 * 179.97438 * 7 6 3 9 9 C 1.38237 * 120.00415 * 359.97438 * 8 7 6 10 10 C 1.50705 * 120.00103 * 180.02562 * 9 8 7 11 11 H 1.08993 * 109.47046 * 339.99882 * 10 9 8 12 12 N 1.46897 * 109.46635 * 219.99642 * 10 9 8 13 13 C 1.46894 * 110.99966 * 81.09571 * 12 10 9 14 14 C 1.53006 * 109.47324 * 174.80363 * 13 12 10 15 15 H 1.09000 * 109.47121 * 59.99135 * 14 13 12 16 16 O 1.42905 * 109.46663 * 299.99945 * 14 13 12 17 17 C 1.50697 * 109.47465 * 180.02562 * 14 13 12 18 18 H 1.08002 * 119.99845 * 359.97438 * 17 14 13 19 19 C 1.37875 * 120.00313 * 179.72414 * 17 14 13 20 20 N 1.31519 * 119.99748 * 0.27049 * 19 17 14 21 21 Si 1.86793 * 120.00368 * 180.27358 * 19 17 14 22 22 H 1.48499 * 109.47308 * 59.99728 * 21 19 17 23 23 H 1.48495 * 109.47476 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46879 * 300.00084 * 21 19 17 25 25 C 1.53002 * 109.47053 * 99.99828 * 10 9 8 26 26 C 1.52996 * 109.47179 * 175.54261 * 25 10 9 27 27 C 1.53002 * 109.47088 * 295.54227 * 25 10 9 28 28 C 1.38235 * 119.99752 * 0.27181 * 9 8 7 29 29 C 1.38222 * 120.00417 * 59.97883 * 6 3 2 30 30 H 1.09000 * 109.46895 * 60.00348 * 1 2 3 31 31 H 1.08997 * 109.46774 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47104 * 299.99614 * 1 2 3 33 33 H 1.09001 * 109.47172 * 239.99911 * 2 1 3 34 34 H 1.09000 * 109.46895 * 119.99652 * 2 1 3 35 35 H 1.09001 * 109.47354 * 300.00279 * 5 3 2 36 36 H 1.09001 * 109.46924 * 60.00310 * 5 3 2 37 37 H 1.08997 * 109.46987 * 179.97438 * 5 3 2 38 38 H 1.07991 * 120.00297 * 359.97438 * 7 6 3 39 39 H 1.08007 * 120.00077 * 179.97438 * 8 7 6 40 40 H 1.00897 * 111.00287 * 317.13708 * 12 10 9 41 41 H 1.08997 * 109.47268 * 54.80065 * 13 12 10 42 42 H 1.08996 * 109.47103 * 294.79634 * 13 12 10 43 43 H 0.96698 * 113.99810 * 299.99630 * 16 14 13 44 44 H 0.96998 * 119.99721 * 180.02562 * 20 19 17 45 45 H 1.09006 * 109.47373 * 55.54113 * 25 10 9 46 46 H 1.09001 * 109.47056 * 54.95444 * 26 25 10 47 47 H 1.08992 * 109.47504 * 174.95774 * 26 25 10 48 48 H 1.09002 * 109.47279 * 294.95827 * 26 25 10 49 49 H 1.09002 * 109.47328 * 60.00055 * 27 25 10 50 50 H 1.08999 * 109.46992 * 180.02562 * 27 25 10 51 51 H 1.09006 * 109.46921 * 300.00163 * 27 25 10 52 52 H 1.08004 * 120.00006 * 179.73287 * 28 9 8 53 53 H 1.08006 * 120.00433 * 359.97438 * 29 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5419 1.4443 0.1238 7 6 4.1462 2.0736 1.1961 8 6 5.5238 2.0748 1.3100 9 6 6.2972 1.4462 0.3520 10 6 7.7990 1.4470 0.4765 11 1 8.1080 2.2535 1.1413 12 7 8.4000 1.6473 -0.8488 13 6 8.4049 3.0698 -1.2151 14 6 9.1518 3.2535 -2.5378 15 1 8.6542 2.6787 -3.3189 16 8 10.4973 2.7944 -2.3926 17 6 9.1573 4.7129 -2.9132 18 1 8.6758 5.4371 -2.2728 19 6 9.7815 5.1244 -4.0717 20 7 10.3675 4.2425 -4.8518 21 14 9.7949 6.9344 -4.5332 22 1 10.4721 7.7126 -3.4650 23 1 10.5250 7.1133 -5.8138 24 1 8.3987 7.4163 -4.6873 25 6 8.2639 0.1069 1.0501 26 6 9.7932 0.0649 1.0729 27 6 7.7281 -0.0516 2.4744 28 6 5.6930 0.8213 -0.7229 29 6 4.3152 0.8163 -0.8345 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0699 1.5875 -2.1492 36 1 0.5490 2.1252 -1.3969 37 1 1.9982 3.1543 -1.3072 38 1 3.5421 2.5643 1.9448 39 1 5.9961 2.5668 2.1475 40 1 7.9260 1.0955 -1.5480 41 1 8.9025 3.6445 -0.4340 42 1 7.3786 3.4200 -1.3259 43 1 11.0013 3.2624 -1.7129 44 1 10.8069 4.5321 -5.6666 45 1 7.8874 -0.7050 0.4278 46 1 10.1722 0.9278 1.6206 47 1 10.1242 -0.8506 1.5630 48 1 10.1726 0.0878 0.0513 49 1 6.6386 -0.0217 2.4582 50 1 8.0597 -1.0061 2.8832 51 1 8.1046 0.7603 3.0967 52 1 6.2974 0.3339 -1.4737 53 1 3.8431 0.3240 -1.6719 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001644881599.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:17 Heat of formation + Delta-G solvation = -60.134615 kcal Electronic energy + Delta-G solvation = -27620.270826 eV Core-core repulsion = 24069.265090 eV Total energy + Delta-G solvation = -3551.005737 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.02619 -37.82968 -35.93589 -35.31293 -33.02058 -32.02181 -31.11391 -30.83386 -29.12427 -27.90326 -26.72192 -25.65882 -24.42173 -23.31774 -22.82184 -21.60585 -20.46677 -19.85439 -19.46137 -16.90850 -16.81656 -15.55900 -15.41273 -15.11000 -14.76857 -14.56365 -14.36797 -14.25005 -14.11308 -13.80257 -13.55896 -13.35229 -13.26816 -13.02128 -12.70836 -12.62485 -12.25934 -12.15544 -12.07470 -11.93532 -11.82016 -11.59874 -11.33157 -11.14798 -11.02099 -10.89905 -10.84412 -10.84051 -10.78570 -10.62623 -10.57094 -10.36821 -10.35724 -10.01577 -8.96268 -8.81525 -8.53651 -8.40296 -8.06347 -7.68744 -5.96553 -4.14554 1.42308 1.49988 3.30738 3.35955 3.37765 3.81822 4.38830 4.49816 4.60045 4.68646 4.82579 4.85555 5.01043 5.07052 5.18883 5.22125 5.23677 5.26731 5.31331 5.32911 5.40498 5.51278 5.55477 5.59038 5.71395 5.75244 5.75739 5.81464 5.83640 5.86589 5.95587 6.03124 6.08762 6.09622 6.14443 6.16204 6.19395 6.24454 6.29675 6.33732 6.50907 6.53751 6.59370 6.67780 6.73109 6.79159 6.91600 7.09730 7.64155 7.74125 7.88843 7.99084 8.25676 8.89170 9.50648 9.67368 11.07531 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.010497 B = 0.003498 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.896889 B = 8002.022162 C = 9978.552274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.050 4.050 4 H 0.074 0.926 5 C -0.146 4.146 6 C -0.085 4.085 7 C -0.118 4.118 8 C -0.111 4.111 9 C -0.101 4.101 10 C 0.127 3.873 11 H 0.079 0.921 12 N -0.666 5.666 13 C 0.036 3.964 14 C 0.238 3.762 15 H 0.050 0.950 16 O -0.554 6.554 17 C -0.573 4.573 18 H 0.053 0.947 19 C 0.080 3.920 20 N -0.859 5.859 21 Si 0.888 3.112 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.277 1.277 25 C -0.077 4.077 26 C -0.134 4.134 27 C -0.147 4.147 28 C -0.113 4.113 29 C -0.109 4.109 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.335 0.665 41 H 0.058 0.942 42 H 0.022 0.978 43 H 0.342 0.658 44 H 0.260 0.740 45 H 0.065 0.935 46 H 0.048 0.952 47 H 0.040 0.960 48 H 0.075 0.925 49 H 0.053 0.947 50 H 0.051 0.949 51 H 0.051 0.949 52 H 0.121 0.879 53 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.330 -9.190 13.329 22.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.068 4.068 4 H 0.092 0.908 5 C -0.203 4.203 6 C -0.085 4.085 7 C -0.136 4.136 8 C -0.130 4.130 9 C -0.103 4.103 10 C 0.017 3.983 11 H 0.098 0.902 12 N -0.295 5.295 13 C -0.093 4.093 14 C 0.180 3.820 15 H 0.067 0.933 16 O -0.356 6.356 17 C -0.611 4.611 18 H 0.071 0.929 19 C -0.126 4.126 20 N -0.494 5.494 21 Si 0.715 3.285 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.203 1.203 25 C -0.096 4.096 26 C -0.191 4.191 27 C -0.205 4.205 28 C -0.131 4.131 29 C -0.127 4.127 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.154 0.846 41 H 0.076 0.924 42 H 0.040 0.960 43 H 0.185 0.815 44 H 0.070 0.930 45 H 0.083 0.917 46 H 0.067 0.933 47 H 0.059 0.941 48 H 0.094 0.906 49 H 0.072 0.928 50 H 0.070 0.930 51 H 0.070 0.930 52 H 0.139 0.861 53 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.744 -9.626 12.879 21.816 hybrid contribution -0.916 1.742 -0.059 1.969 sum -15.661 -7.884 12.820 21.720 Atomic orbital electron populations 1.21837 0.95872 1.01523 1.01884 1.21583 0.95586 0.95854 1.02273 1.20145 0.91195 0.96551 0.98939 0.90785 1.21902 1.00988 1.00788 0.96662 1.19769 0.94965 0.98574 0.95235 1.20978 0.94665 1.00079 0.97896 1.20993 0.93509 0.99647 0.98837 1.20839 0.97721 0.97029 0.94681 1.20736 0.86417 0.97789 0.93406 0.90238 1.60722 1.56904 1.09920 1.01981 1.22890 0.98951 0.86316 1.01101 1.19244 0.80387 0.93487 0.88920 0.93268 1.86551 1.25698 1.62963 1.60354 1.21610 1.38050 0.93600 1.07866 0.92907 1.25015 0.94479 0.97191 0.95934 1.70074 1.33615 1.33260 1.12493 0.86757 0.78158 0.85755 0.77801 1.20174 1.21206 1.20251 1.21024 0.96707 0.96287 0.95575 1.21663 0.94241 0.99932 1.03269 1.21871 1.00888 1.01182 0.96533 1.20952 0.94619 0.99658 0.97884 1.20882 0.93465 0.99772 0.98601 0.92412 0.92849 0.92847 0.91778 0.91982 0.92373 0.92343 0.92489 0.86645 0.86492 0.84578 0.92358 0.96020 0.81493 0.93003 0.91691 0.93335 0.94133 0.90633 0.92795 0.92987 0.92957 0.86125 0.86455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.67 37.16 0.36 -0.72 16 2 C -0.12 -0.96 5.14 -26.73 -0.14 -1.10 16 3 C -0.05 -0.47 2.56 -91.77 -0.24 -0.70 16 4 H 0.07 0.65 7.88 -51.93 -0.41 0.24 16 5 C -0.15 -1.36 8.76 37.16 0.33 -1.03 16 6 C -0.09 -0.99 4.78 -104.63 -0.50 -1.49 16 7 C -0.12 -1.40 9.67 -39.58 -0.38 -1.78 16 8 C -0.11 -1.42 8.75 -39.59 -0.35 -1.77 16 9 C -0.10 -1.39 3.85 -104.62 -0.40 -1.79 16 10 C 0.13 1.83 1.80 -68.86 -0.12 1.71 16 11 H 0.08 1.20 7.65 -51.93 -0.40 0.80 16 12 N -0.67 -11.55 5.19 -107.96 -0.56 -12.11 16 13 C 0.04 0.75 5.09 -3.82 -0.02 0.73 16 14 C 0.24 6.04 3.08 -27.88 -0.09 5.95 16 15 H 0.05 1.38 8.14 -51.93 -0.42 0.96 16 16 O -0.55 -14.44 12.59 -35.23 -0.44 -14.89 16 17 C -0.57 -15.88 8.76 -34.44 -0.30 -16.19 16 18 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 19 C 0.08 2.26 5.40 -17.82 -0.10 2.17 16 20 N -0.86 -25.64 12.83 55.43 0.71 -24.93 16 21 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C -0.08 -0.98 2.66 -90.62 -0.24 -1.22 16 26 C -0.13 -1.78 8.90 37.16 0.33 -1.45 16 27 C -0.15 -1.61 8.90 37.16 0.33 -1.28 16 28 C -0.11 -1.54 9.17 -39.58 -0.36 -1.91 16 29 C -0.11 -1.36 8.76 -39.59 -0.35 -1.70 16 30 H 0.06 0.39 6.56 -51.93 -0.34 0.05 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.55 7.57 -51.93 -0.39 0.15 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.56 7.39 -51.93 -0.38 0.17 16 36 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.12 1.14 7.95 -52.49 -0.42 0.73 16 39 H 0.12 1.35 8.04 -52.48 -0.42 0.92 16 40 H 0.33 5.82 6.50 -39.29 -0.26 5.56 16 41 H 0.06 1.20 7.94 -51.93 -0.41 0.79 16 42 H 0.02 0.46 7.96 -51.93 -0.41 0.05 16 43 H 0.34 8.10 9.04 45.56 0.41 8.52 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.07 1.17 7.66 -51.93 -0.40 0.77 16 49 H 0.05 0.60 6.74 -51.93 -0.35 0.25 16 50 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 52 H 0.12 1.63 6.49 -52.48 -0.34 1.29 16 53 H 0.12 1.29 7.16 -52.48 -0.38 0.92 16 LS Contribution 413.73 15.07 6.23 6.23 Total: -1.00 -29.94 413.73 -10.32 -40.26 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -9.01 Total: 12.62 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: -2.24 Total: -23.57 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.15 Total: -37.04 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.44 Total: -14.89 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -29.94 -10.32 -40.26 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001644881599.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.876 kcal (2) G-P(sol) polarization free energy of solvation -29.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds