Wall clock time and date at job start Tue Mar 31 2020 12:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46890 * 2 1 4 4 H 1.09001 * 109.47283 * 55.00070 * 3 2 1 5 5 C 1.52997 * 109.47024 * 294.99748 * 3 2 1 6 6 C 1.50700 * 109.46633 * 175.00089 * 3 2 1 7 7 C 1.38243 * 119.99352 * 239.99857 * 6 3 2 8 8 C 1.38229 * 119.99466 * 179.97438 * 7 6 3 9 9 C 1.38237 * 120.00415 * 359.97438 * 8 7 6 10 10 C 1.50705 * 120.00103 * 180.02562 * 9 8 7 11 11 H 1.08993 * 109.47046 * 339.99882 * 10 9 8 12 12 N 1.46897 * 109.46635 * 219.99642 * 10 9 8 13 13 C 1.46894 * 110.99966 * 81.09571 * 12 10 9 14 14 C 1.53006 * 109.47324 * 174.80363 * 13 12 10 15 15 H 1.09000 * 109.47121 * 59.99135 * 14 13 12 16 16 O 1.42905 * 109.46663 * 299.99945 * 14 13 12 17 17 C 1.50697 * 109.47465 * 180.02562 * 14 13 12 18 18 H 1.08002 * 119.99845 * 359.97438 * 17 14 13 19 19 C 1.37875 * 120.00313 * 179.72414 * 17 14 13 20 20 N 1.31519 * 119.99748 * 0.27049 * 19 17 14 21 21 Si 1.86793 * 120.00368 * 180.27358 * 19 17 14 22 22 H 1.48499 * 109.47308 * 59.99728 * 21 19 17 23 23 H 1.48495 * 109.47476 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46879 * 300.00084 * 21 19 17 25 25 C 1.53002 * 109.47053 * 99.99828 * 10 9 8 26 26 C 1.52996 * 109.47179 * 175.54261 * 25 10 9 27 27 C 1.53002 * 109.47088 * 295.54227 * 25 10 9 28 28 C 1.38235 * 119.99752 * 0.27181 * 9 8 7 29 29 C 1.38222 * 120.00417 * 59.97883 * 6 3 2 30 30 H 1.09000 * 109.46895 * 60.00348 * 1 2 3 31 31 H 1.08997 * 109.46774 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47104 * 299.99614 * 1 2 3 33 33 H 1.09001 * 109.47172 * 239.99911 * 2 1 3 34 34 H 1.09000 * 109.46895 * 119.99652 * 2 1 3 35 35 H 1.09001 * 109.47354 * 300.00279 * 5 3 2 36 36 H 1.09001 * 109.46924 * 60.00310 * 5 3 2 37 37 H 1.08997 * 109.46987 * 179.97438 * 5 3 2 38 38 H 1.07991 * 120.00297 * 359.97438 * 7 6 3 39 39 H 1.08007 * 120.00077 * 179.97438 * 8 7 6 40 40 H 1.00897 * 111.00287 * 317.13708 * 12 10 9 41 41 H 1.08997 * 109.47268 * 54.80065 * 13 12 10 42 42 H 1.08996 * 109.47103 * 294.79634 * 13 12 10 43 43 H 0.96698 * 113.99810 * 299.99630 * 16 14 13 44 44 H 0.96998 * 119.99721 * 180.02562 * 20 19 17 45 45 H 1.09006 * 109.47373 * 55.54113 * 25 10 9 46 46 H 1.09001 * 109.47056 * 54.95444 * 26 25 10 47 47 H 1.08992 * 109.47504 * 174.95774 * 26 25 10 48 48 H 1.09002 * 109.47279 * 294.95827 * 26 25 10 49 49 H 1.09002 * 109.47328 * 60.00055 * 27 25 10 50 50 H 1.08999 * 109.46992 * 180.02562 * 27 25 10 51 51 H 1.09006 * 109.46921 * 300.00163 * 27 25 10 52 52 H 1.08004 * 120.00006 * 179.73287 * 28 9 8 53 53 H 1.08006 * 120.00433 * 359.97438 * 29 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5419 1.4443 0.1238 7 6 4.1462 2.0736 1.1961 8 6 5.5238 2.0748 1.3100 9 6 6.2972 1.4462 0.3520 10 6 7.7990 1.4470 0.4765 11 1 8.1080 2.2535 1.1413 12 7 8.4000 1.6473 -0.8488 13 6 8.4049 3.0698 -1.2151 14 6 9.1518 3.2535 -2.5378 15 1 8.6542 2.6787 -3.3189 16 8 10.4973 2.7944 -2.3926 17 6 9.1573 4.7129 -2.9132 18 1 8.6758 5.4371 -2.2728 19 6 9.7815 5.1244 -4.0717 20 7 10.3675 4.2425 -4.8518 21 14 9.7949 6.9344 -4.5332 22 1 10.4721 7.7126 -3.4650 23 1 10.5250 7.1133 -5.8138 24 1 8.3987 7.4163 -4.6873 25 6 8.2639 0.1069 1.0501 26 6 9.7932 0.0649 1.0729 27 6 7.7281 -0.0516 2.4744 28 6 5.6930 0.8213 -0.7229 29 6 4.3152 0.8163 -0.8345 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0699 1.5875 -2.1492 36 1 0.5490 2.1252 -1.3969 37 1 1.9982 3.1543 -1.3072 38 1 3.5421 2.5643 1.9448 39 1 5.9961 2.5668 2.1475 40 1 7.9260 1.0955 -1.5480 41 1 8.9025 3.6445 -0.4340 42 1 7.3786 3.4200 -1.3259 43 1 11.0013 3.2624 -1.7129 44 1 10.8069 4.5321 -5.6666 45 1 7.8874 -0.7050 0.4278 46 1 10.1722 0.9278 1.6206 47 1 10.1242 -0.8506 1.5630 48 1 10.1726 0.0878 0.0513 49 1 6.6386 -0.0217 2.4582 50 1 8.0597 -1.0061 2.8832 51 1 8.1046 0.7603 3.0967 52 1 6.2974 0.3339 -1.4737 53 1 3.8431 0.3240 -1.6719 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001644881599.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:17 Heat of formation + Delta-G solvation = -76.660387 kcal Electronic energy + Delta-G solvation = -27620.987437 eV Core-core repulsion = 24069.265090 eV Total energy + Delta-G solvation = -3551.722348 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.03923 -38.95597 -37.61818 -36.34463 -34.47592 -34.15050 -32.02351 -31.83540 -30.23300 -29.41635 -27.74715 -27.04205 -25.58755 -24.55187 -23.87112 -22.71676 -22.13356 -20.69213 -20.56393 -18.98110 -17.91934 -16.70926 -16.61128 -16.44929 -16.32734 -15.89325 -15.73315 -15.42974 -15.27293 -14.95016 -14.78772 -14.61152 -14.39997 -14.23176 -13.84701 -13.67189 -13.30899 -13.27396 -13.05642 -12.91448 -12.87478 -12.83990 -12.81996 -12.67824 -12.53852 -12.43341 -12.06913 -12.01342 -11.88680 -11.71990 -11.56003 -11.50189 -11.43499 -11.28841 -11.00915 -10.70343 -10.06850 -9.80386 -9.41203 -9.15703 -8.12772 -6.38735 0.43683 0.51263 1.39515 1.41218 1.49414 2.38344 2.83557 3.12856 3.32021 3.68343 3.75919 3.88838 4.04441 4.11650 4.15908 4.20171 4.23542 4.36044 4.42096 4.48694 4.50297 4.53360 4.57571 4.62312 4.67705 4.69233 4.75054 4.79739 4.88493 4.93393 5.01164 5.07395 5.07981 5.10019 5.12865 5.14784 5.18112 5.20233 5.24889 5.31612 5.39456 5.48225 5.50292 5.57391 5.60572 5.65108 5.66558 5.75923 5.77434 6.06339 6.13101 6.25936 6.50672 6.74787 7.35206 7.63602 8.91363 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.010497 B = 0.003498 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.896889 B = 8002.022162 C = 9978.552274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.047 4.047 4 H 0.085 0.915 5 C -0.145 4.145 6 C -0.085 4.085 7 C -0.122 4.122 8 C -0.117 4.117 9 C -0.113 4.113 10 C 0.132 3.868 11 H 0.076 0.924 12 N -0.668 5.668 13 C 0.062 3.938 14 C 0.239 3.761 15 H 0.014 0.986 16 O -0.568 6.568 17 C -0.588 4.588 18 H 0.056 0.944 19 C 0.027 3.973 20 N -0.898 5.898 21 Si 0.958 3.042 22 H -0.267 1.267 23 H -0.284 1.284 24 H -0.270 1.270 25 C -0.072 4.072 26 C -0.129 4.129 27 C -0.139 4.139 28 C -0.130 4.130 29 C -0.117 4.117 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.045 0.955 38 H 0.138 0.862 39 H 0.129 0.871 40 H 0.333 0.667 41 H 0.061 0.939 42 H 0.013 0.987 43 H 0.352 0.648 44 H 0.261 0.739 45 H 0.060 0.940 46 H 0.046 0.954 47 H 0.058 0.942 48 H 0.048 0.952 49 H 0.053 0.947 50 H 0.064 0.936 51 H 0.057 0.943 52 H 0.113 0.887 53 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.884 -8.595 15.001 24.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.065 4.065 4 H 0.103 0.897 5 C -0.203 4.203 6 C -0.085 4.085 7 C -0.140 4.140 8 C -0.136 4.136 9 C -0.115 4.115 10 C 0.022 3.978 11 H 0.094 0.906 12 N -0.297 5.297 13 C -0.068 4.068 14 C 0.181 3.819 15 H 0.032 0.968 16 O -0.371 6.371 17 C -0.627 4.627 18 H 0.074 0.926 19 C -0.176 4.176 20 N -0.535 5.535 21 Si 0.783 3.217 22 H -0.192 1.192 23 H -0.209 1.209 24 H -0.195 1.195 25 C -0.091 4.091 26 C -0.187 4.187 27 C -0.197 4.197 28 C -0.148 4.148 29 C -0.135 4.135 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.156 0.844 39 H 0.147 0.853 40 H 0.152 0.848 41 H 0.079 0.921 42 H 0.031 0.969 43 H 0.196 0.804 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.065 0.935 47 H 0.076 0.924 48 H 0.067 0.933 49 H 0.072 0.928 50 H 0.083 0.917 51 H 0.077 0.923 52 H 0.131 0.869 53 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.309 -9.035 14.576 23.666 hybrid contribution -0.461 1.494 -0.567 1.663 sum -16.770 -7.541 14.009 23.116 Atomic orbital electron populations 1.21819 0.94647 1.02092 1.02316 1.21546 0.96608 0.94946 1.01906 1.20179 0.89604 0.97405 0.99323 0.89699 1.21897 1.02052 0.99900 0.96403 1.20075 0.96278 0.97516 0.94645 1.21282 0.94559 0.99761 0.98360 1.21179 0.94062 0.99406 0.98918 1.20738 0.97140 0.98166 0.95436 1.20724 0.87113 0.98610 0.91323 0.90614 1.60658 1.57884 1.07761 1.03417 1.22393 0.97472 0.88412 0.98489 1.19089 0.80461 0.91973 0.90383 0.96827 1.86496 1.26282 1.63244 1.61045 1.21996 1.37787 0.94766 1.08104 0.92622 1.25882 0.93999 1.01887 0.95832 1.70216 1.34706 1.35574 1.13023 0.85637 0.78450 0.80018 0.77615 1.19152 1.20895 1.19480 1.20983 0.96303 0.95020 0.96785 1.21605 0.94562 1.00787 1.01710 1.21793 1.00753 1.02148 0.94978 1.21019 0.95351 1.00414 0.98052 1.21044 0.93086 1.00045 0.99295 0.92124 0.92278 0.92246 0.92257 0.92290 0.93041 0.90652 0.93624 0.84411 0.85272 0.84772 0.92097 0.96888 0.80425 0.93006 0.92193 0.93504 0.92350 0.93289 0.92835 0.91681 0.92349 0.86923 0.85585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.67 71.98 0.70 -1.09 16 2 C -0.11 -1.68 5.14 30.60 0.16 -1.52 16 3 C -0.05 -0.79 2.56 -11.54 -0.03 -0.82 16 4 H 0.08 1.27 7.88 -2.39 -0.02 1.25 16 5 C -0.15 -2.49 8.76 71.98 0.63 -1.86 16 6 C -0.09 -1.86 4.78 -19.87 -0.09 -1.96 16 7 C -0.12 -2.66 9.67 22.27 0.22 -2.44 16 8 C -0.12 -2.83 8.75 22.27 0.19 -2.64 16 9 C -0.11 -3.08 3.85 -19.86 -0.08 -3.15 16 10 C 0.13 3.79 1.80 44.17 0.08 3.87 16 11 H 0.08 2.23 7.65 -2.39 -0.02 2.21 16 12 N -0.67 -23.76 5.19 -495.47 -2.57 -26.33 16 13 C 0.06 2.60 5.09 86.31 0.44 3.04 16 14 C 0.24 12.51 3.08 29.85 0.09 12.61 16 15 H 0.01 0.82 8.14 -2.39 -0.02 0.80 16 16 O -0.57 -30.39 12.59 -148.98 -1.87 -32.26 16 17 C -0.59 -33.02 8.76 25.60 0.22 -32.79 16 18 H 0.06 3.03 7.74 -2.91 -0.02 3.00 16 19 C 0.03 1.51 5.40 84.65 0.46 1.97 16 20 N -0.90 -54.64 12.83 21.45 0.28 -54.37 16 21 Si 0.96 44.01 29.54 68.60 2.03 46.03 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 25 C -0.07 -1.79 2.66 -10.79 -0.03 -1.82 16 26 C -0.13 -3.37 8.90 71.98 0.64 -2.73 16 27 C -0.14 -2.80 8.90 71.98 0.64 -2.16 16 28 C -0.13 -3.60 9.17 22.27 0.20 -3.40 16 29 C -0.12 -2.87 8.76 22.27 0.20 -2.67 16 30 H 0.06 0.68 6.56 -2.39 -0.02 0.67 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.94 7.57 -2.39 -0.02 0.92 16 34 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.05 0.94 7.39 -2.39 -0.02 0.92 16 36 H 0.07 1.03 6.56 -2.39 -0.02 1.01 16 37 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.14 2.35 7.95 -2.92 -0.02 2.32 16 39 H 0.13 2.74 8.04 -2.91 -0.02 2.71 16 40 H 0.33 12.11 6.50 -89.70 -0.58 11.52 16 41 H 0.06 2.51 7.94 -2.39 -0.02 2.49 16 42 H 0.01 0.56 7.96 -2.39 -0.02 0.54 16 43 H 0.35 16.98 9.04 -74.06 -0.67 16.31 16 44 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 45 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 46 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.05 1.53 7.66 -2.39 -0.02 1.51 16 49 H 0.05 1.09 6.74 -2.39 -0.02 1.07 16 50 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 51 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 52 H 0.11 3.20 6.49 -2.91 -0.02 3.18 16 53 H 0.13 2.77 7.16 -2.91 -0.02 2.75 16 Total: -1.00 -64.33 413.73 2.11 -62.22 By element: Atomic # 1 Polarization: 44.65 SS G_CDS: -0.38 Total: 44.27 kcal Atomic # 6 Polarization: -44.20 SS G_CDS: 4.64 Total: -39.56 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -2.30 Total: -80.70 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -1.87 Total: -32.26 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -64.33 2.11 -62.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001644881599.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.443 kcal (2) G-P(sol) polarization free energy of solvation -64.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds