Wall clock time and date at job start Tue Mar 31 2020 13:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00210 * 2 1 4 4 H 1.48499 * 109.47224 * 239.99910 * 3 2 1 5 5 H 1.48503 * 109.46990 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47283 * 119.99610 * 3 2 1 7 7 C 1.37876 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00116 * 160.57285 * 7 2 1 9 9 C 1.50698 * 119.99957 * 340.56875 * 7 2 1 10 10 C 1.53002 * 115.55085 * 324.78091 * 9 7 2 11 11 N 1.46903 * 109.47063 * 149.84517 * 10 9 7 12 12 C 1.46902 * 110.99729 * 177.47182 * 11 10 9 13 13 C 1.53005 * 109.46817 * 138.66957 * 12 11 10 14 14 C 1.52995 * 109.47053 * 56.30542 * 13 12 11 15 15 C 1.53001 * 109.46742 * 179.97438 * 14 13 12 16 16 C 1.53001 * 109.46899 * 60.00407 * 15 14 13 17 17 C 1.52995 * 109.47091 * 299.99379 * 16 15 14 18 18 C 1.53001 * 109.46742 * 60.00525 * 17 16 15 19 19 C 1.52999 * 109.47176 * 258.66801 * 12 11 10 20 20 C 1.52995 * 109.47015 * 179.68056 * 19 12 11 21 21 C 1.52999 * 109.47015 * 180.02562 * 20 19 12 22 22 C 1.53005 * 109.47513 * 59.99976 * 21 20 19 23 23 C 1.52995 * 109.46478 * 299.99943 * 22 21 20 24 24 C 1.53002 * 109.47131 * 59.67661 * 19 12 11 25 25 C 1.53001 * 117.49866 * 179.10879 * 9 7 2 26 26 C 1.53000 * 60.03369 * 252.47707 * 25 9 7 27 27 H 0.97009 * 120.00034 * 5.02537 * 1 2 3 28 28 H 1.09004 * 109.46730 * 269.84272 * 10 9 7 29 29 H 1.08992 * 109.47162 * 29.84706 * 10 9 7 30 30 H 1.00897 * 111.00120 * 301.43082 * 11 10 9 31 31 H 1.09001 * 109.46907 * 18.66803 * 12 11 10 32 32 H 1.08996 * 109.47107 * 176.31166 * 13 12 11 33 33 H 1.09001 * 109.47330 * 299.99982 * 14 13 12 34 34 H 1.09006 * 109.47247 * 60.00286 * 14 13 12 35 35 H 1.09001 * 109.47333 * 300.00152 * 15 14 13 36 36 H 1.08998 * 109.47123 * 180.02562 * 15 14 13 37 37 H 1.09005 * 109.46834 * 179.97438 * 16 15 14 38 38 H 1.09001 * 109.47337 * 59.99746 * 16 15 14 39 39 H 1.08996 * 109.47673 * 300.00077 * 17 16 15 40 40 H 1.09006 * 109.47247 * 180.02562 * 17 16 15 41 41 H 1.09007 * 109.47154 * 180.02562 * 18 17 16 42 42 H 1.09001 * 109.47333 * 59.99848 * 18 17 16 43 43 H 1.09004 * 109.46964 * 299.67940 * 19 12 11 44 44 H 1.09004 * 109.47160 * 299.99764 * 20 19 12 45 45 H 1.08993 * 109.47773 * 59.99742 * 20 19 12 46 46 H 1.08996 * 109.47203 * 299.99780 * 21 20 19 47 47 H 1.09011 * 109.47165 * 179.97438 * 21 20 19 48 48 H 1.08990 * 109.47242 * 180.02562 * 22 21 20 49 49 H 1.08996 * 109.47046 * 59.99708 * 22 21 20 50 50 H 1.09004 * 109.47494 * 299.99783 * 23 22 21 51 51 H 1.09006 * 109.46966 * 179.97438 * 23 22 21 52 52 H 1.08993 * 109.47053 * 299.99931 * 24 19 12 53 53 H 1.08996 * 109.46934 * 60.00011 * 24 19 12 54 54 H 1.08998 * 117.50118 * 359.97438 * 25 9 7 55 55 H 1.09003 * 117.49528 * 144.97611 * 25 9 7 56 56 H 1.09000 * 117.49949 * 107.50078 * 26 25 9 57 57 H 1.09001 * 117.50230 * 252.52680 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0383 -1.2208 -0.3105 9 6 1.3153 -2.4618 0.4353 10 6 0.2941 -2.3041 1.5636 11 7 -0.7590 -3.3177 1.4161 12 6 -1.7270 -3.2352 2.5180 13 6 -3.1432 -3.4143 1.9670 14 6 -3.2316 -4.7405 1.2093 15 6 -4.6479 -4.9199 0.6590 16 6 -4.9755 -3.7666 -0.2916 17 6 -4.8870 -2.4404 0.4661 18 6 -3.4707 -2.2610 1.0164 19 6 -1.4336 -4.3369 3.5383 20 6 -2.4369 -4.2460 4.6897 21 6 -2.1431 -5.3473 5.7103 22 6 -0.7242 -5.1723 6.2553 23 6 0.2791 -5.2633 5.1038 24 6 -0.0146 -4.1626 4.0832 25 6 2.1279 -3.7575 0.3938 26 6 1.0253 -3.5135 -0.6385 27 1 -0.4850 0.8369 -0.0736 28 1 0.7917 -2.4343 2.5247 29 1 -0.1496 -1.3097 1.5158 30 1 -1.2199 -3.2329 0.5226 31 1 -1.6455 -2.2615 3.0010 32 1 -3.8560 -3.4186 2.7916 33 1 -2.5188 -4.7361 0.3847 34 1 -2.9987 -5.5622 1.8866 35 1 -5.3604 -4.9244 1.4838 36 1 -4.7111 -5.8649 0.1195 37 1 -5.9843 -3.8946 -0.6841 38 1 -4.2630 -3.7620 -1.1165 39 1 -5.5995 -2.4448 1.2909 40 1 -5.1208 -1.6187 -0.2110 41 1 -3.4077 -1.3164 1.5567 42 1 -2.7582 -2.2565 0.1916 43 1 -1.5207 -5.3108 3.0565 44 1 -2.3498 -3.2720 5.1715 45 1 -3.4478 -4.3701 4.3016 46 1 -2.2299 -6.3213 5.2289 47 1 -2.8577 -5.2822 6.5310 48 1 -0.5147 -5.9571 6.9820 49 1 -0.6374 -4.1983 6.7367 50 1 0.1923 -6.2374 4.6223 51 1 1.2900 -5.1383 5.4919 52 1 0.7001 -4.2274 3.2629 53 1 0.0725 -3.1887 4.5649 54 1 3.1608 -3.6931 0.0516 55 1 1.9352 -4.4975 1.1706 56 1 1.3328 -3.2885 -1.6598 57 1 0.1070 -4.0926 -0.5407 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001648144452.mol2 57 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:24 Heat of formation + Delta-G solvation = -28.609733 kcal Electronic energy + Delta-G solvation = -29958.190530 eV Core-core repulsion = 26544.384910 eV Total energy + Delta-G solvation = -3413.805621 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 319.257 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.96032 -38.68119 -38.54097 -35.63576 -34.20838 -32.34707 -31.59575 -31.24657 -30.76751 -27.88015 -26.67174 -24.76627 -23.59717 -23.50109 -22.78262 -22.62512 -21.12970 -20.86351 -20.30606 -19.80210 -18.06709 -16.84746 -16.59328 -16.46996 -15.93491 -15.87088 -15.33797 -15.03519 -14.89351 -14.83342 -14.81183 -14.45829 -14.32891 -13.76337 -13.60397 -13.51656 -13.17356 -12.99086 -12.95289 -12.83852 -12.76549 -12.74365 -12.40036 -12.36391 -12.17529 -11.96430 -11.91758 -11.88216 -11.80322 -11.69275 -11.39087 -11.29886 -11.10100 -11.03539 -10.91659 -10.74560 -10.59411 -10.51669 -10.42264 -9.85614 -8.86590 -8.06125 -6.12057 1.38252 1.41942 1.48595 2.40377 2.97808 3.56355 3.71762 3.77196 3.89668 3.92145 3.99300 4.07068 4.10346 4.35591 4.39119 4.42021 4.48677 4.52009 4.58862 4.63421 4.65552 4.72471 4.73301 4.76747 4.77345 4.80295 4.81158 4.85159 4.86376 4.92252 4.97067 5.07467 5.08205 5.18688 5.18977 5.23481 5.27264 5.33297 5.34644 5.36237 5.36787 5.39937 5.40693 5.45206 5.46249 5.51638 5.55590 5.61094 5.65285 5.68136 5.73896 5.76101 5.78352 6.09898 6.36510 6.67607 6.73618 6.98193 7.43723 8.88696 Molecular weight = 319.26amu Principal moments of inertia in cm(-1) A = 0.009574 B = 0.005225 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.787569 B = 5357.409801 C = 6960.033507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.036 3.964 3 Si 0.941 3.059 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.045 0.955 9 C 0.028 3.972 10 C 0.101 3.899 11 N -0.668 5.668 12 C 0.097 3.903 13 C -0.081 4.081 14 C -0.103 4.103 15 C -0.112 4.112 16 C -0.118 4.118 17 C -0.110 4.110 18 C -0.113 4.113 19 C -0.058 4.058 20 C -0.113 4.113 21 C -0.112 4.112 22 C -0.116 4.116 23 C -0.114 4.114 24 C -0.108 4.108 25 C -0.186 4.186 26 C -0.190 4.190 27 H 0.260 0.740 28 H 0.036 0.964 29 H 0.052 0.948 30 H 0.333 0.667 31 H 0.015 0.985 32 H 0.085 0.915 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.038 0.962 42 H 0.040 0.960 43 H 0.073 0.927 44 H 0.047 0.953 45 H 0.072 0.928 46 H 0.065 0.935 47 H 0.071 0.929 48 H 0.071 0.929 49 H 0.052 0.948 50 H 0.062 0.938 51 H 0.054 0.946 52 H 0.052 0.948 53 H 0.033 0.967 54 H 0.062 0.938 55 H 0.084 0.916 56 H 0.050 0.950 57 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.399 -10.532 8.806 17.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.166 4.166 3 Si 0.767 3.233 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.559 4.559 8 H 0.063 0.937 9 C 0.027 3.973 10 C -0.028 4.028 11 N -0.300 5.300 12 C -0.013 4.013 13 C -0.100 4.100 14 C -0.141 4.141 15 C -0.150 4.150 16 C -0.155 4.155 17 C -0.148 4.148 18 C -0.151 4.151 19 C -0.077 4.077 20 C -0.151 4.151 21 C -0.149 4.149 22 C -0.154 4.154 23 C -0.152 4.152 24 C -0.146 4.146 25 C -0.223 4.223 26 C -0.228 4.228 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.154 0.846 31 H 0.033 0.967 32 H 0.103 0.897 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.091 0.909 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.089 0.911 48 H 0.089 0.911 49 H 0.071 0.929 50 H 0.081 0.919 51 H 0.073 0.927 52 H 0.070 0.930 53 H 0.052 0.948 54 H 0.081 0.919 55 H 0.102 0.898 56 H 0.069 0.931 57 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.190 -10.879 9.156 18.094 hybrid contribution 0.631 2.238 -0.730 2.437 sum -10.559 -8.642 8.426 16.037 Atomic orbital electron populations 1.70013 1.06779 1.27155 1.48038 1.25506 0.95431 1.01401 0.94220 0.85890 0.78879 0.79866 0.78666 1.20096 1.20793 1.19973 1.20791 0.97109 0.92474 1.45527 0.93682 1.19119 0.96088 0.87328 0.94784 1.21384 0.91898 0.94636 0.94897 1.60778 1.13512 1.50917 1.04809 1.21563 0.91127 0.96223 0.92376 1.21376 0.95621 0.95193 0.97775 1.21474 0.96927 0.96246 0.99434 1.21515 0.96428 0.97976 0.99067 1.21524 1.01437 0.94558 0.98005 1.21455 0.95771 0.97686 0.99854 1.21521 0.97412 0.97513 0.98622 1.21026 0.94149 0.98462 0.94067 1.21629 0.98923 0.98751 0.95767 1.21487 0.96392 0.98697 0.98344 1.21523 0.95064 1.01532 0.97255 1.21500 0.98756 0.98642 0.96301 1.21509 0.97635 0.97515 0.97948 1.22714 0.94627 1.02413 1.02574 1.22787 0.99008 1.07235 0.93795 0.93022 0.94588 0.93007 0.84632 0.96651 0.89732 0.93298 0.91200 0.91119 0.91392 0.90865 0.93459 0.91064 0.92831 0.94338 0.94169 0.90865 0.93439 0.90924 0.91589 0.91066 0.91071 0.92911 0.91910 0.92726 0.92958 0.94820 0.91942 0.89803 0.93089 0.89375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.53 11.03 21.45 0.24 -48.29 16 2 C 0.04 1.96 5.02 84.66 0.43 2.38 16 3 Si 0.94 43.23 29.58 68.60 2.03 45.26 16 4 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.52 -29.07 9.00 25.60 0.23 -28.84 16 8 H 0.04 2.55 7.89 -2.91 -0.02 2.53 16 9 C 0.03 1.38 2.33 -52.90 -0.12 1.26 16 10 C 0.10 4.68 4.79 86.30 0.41 5.10 16 11 N -0.67 -25.41 4.37 -491.55 -2.15 -27.56 16 12 C 0.10 3.13 1.52 44.92 0.07 3.20 16 13 C -0.08 -2.19 1.70 -10.79 -0.02 -2.21 16 14 C -0.10 -2.53 4.71 30.59 0.14 -2.39 16 15 C -0.11 -2.27 5.92 30.60 0.18 -2.09 16 16 C -0.12 -2.59 5.92 30.59 0.18 -2.41 16 17 C -0.11 -2.70 5.92 30.59 0.18 -2.52 16 18 C -0.11 -3.48 5.05 30.60 0.15 -3.32 16 19 C -0.06 -1.58 1.70 -10.79 -0.02 -1.60 16 20 C -0.11 -2.51 4.86 30.59 0.15 -2.36 16 21 C -0.11 -2.09 5.92 30.60 0.18 -1.90 16 22 C -0.12 -2.34 5.92 30.59 0.18 -2.16 16 23 C -0.11 -2.76 5.92 30.58 0.18 -2.58 16 24 C -0.11 -3.27 3.97 30.58 0.12 -3.14 16 25 C -0.19 -8.35 9.92 30.59 0.30 -8.05 16 26 C -0.19 -8.83 9.36 30.62 0.29 -8.54 16 27 H 0.26 13.78 8.32 -92.70 -0.77 13.01 16 28 H 0.04 1.68 5.97 -2.39 -0.01 1.67 16 29 H 0.05 2.75 5.23 -2.39 -0.01 2.74 16 30 H 0.33 13.55 4.06 -89.70 -0.36 13.19 16 31 H 0.02 0.58 7.64 -2.39 -0.02 0.56 16 32 H 0.08 2.03 6.25 -2.39 -0.01 2.02 16 33 H 0.05 1.42 6.82 -2.39 -0.02 1.41 16 34 H 0.07 1.61 6.52 -2.38 -0.02 1.59 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 41 H 0.04 1.30 8.14 -2.38 -0.02 1.29 16 42 H 0.04 1.50 6.55 -2.39 -0.02 1.48 16 43 H 0.07 2.00 6.51 -2.38 -0.02 1.99 16 44 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 45 H 0.07 1.45 6.36 -2.39 -0.02 1.44 16 46 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 48 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 50 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 51 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 52 H 0.05 1.86 6.40 -2.39 -0.02 1.85 16 53 H 0.03 1.10 8.08 -2.39 -0.02 1.08 16 54 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 55 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 56 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 57 H 0.09 3.82 6.32 -2.39 -0.02 3.81 16 Total: -1.00 -55.51 403.10 3.79 -51.72 By element: Atomic # 1 Polarization: 40.59 SS G_CDS: 0.44 Total: 41.04 kcal Atomic # 6 Polarization: -65.40 SS G_CDS: 3.22 Total: -62.17 kcal Atomic # 7 Polarization: -73.94 SS G_CDS: -1.91 Total: -75.85 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -55.51 3.79 -51.72 kcal The number of atoms in the molecule is 57 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001648144452.mol2 57 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.115 kcal (2) G-P(sol) polarization free energy of solvation -55.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds