Wall clock time and date at job start Tue Mar 31 2020 12:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47042 * 2 1 4 4 O 1.42900 * 109.47016 * 180.02562 * 3 2 1 5 5 C 1.35893 * 116.99784 * 179.97438 * 4 3 2 6 6 C 1.38735 * 120.05431 * 179.97438 * 5 4 3 7 7 C 1.38144 * 119.94856 * 180.02562 * 6 5 4 8 8 C 1.38272 * 120.05315 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.94376 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.46977 * 60.00055 * 9 8 7 11 11 C 1.52998 * 109.46930 * 299.99676 * 9 8 7 12 12 N 1.46903 * 109.46999 * 180.02562 * 9 8 7 13 13 C 1.46892 * 111.00235 * 179.97438 * 12 9 8 14 14 C 1.52997 * 109.47486 * 180.02562 * 13 12 9 15 15 H 1.09002 * 109.47153 * 54.99924 * 14 13 12 16 16 C 1.53002 * 109.46817 * 295.00155 * 14 13 12 17 17 C 1.53000 * 109.47060 * 175.00243 * 14 13 12 18 18 C 1.50703 * 109.46801 * 184.99876 * 17 14 13 19 19 H 1.07998 * 120.00413 * 0.02562 * 18 17 14 20 20 C 1.37878 * 119.99680 * 179.97438 * 18 17 14 21 21 N 1.31512 * 120.00285 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99651 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47312 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47105 * 120.00272 * 22 20 18 25 25 H 1.48501 * 109.47040 * 239.99861 * 22 20 18 26 26 C 1.38269 * 120.10789 * 0.25194 * 8 7 6 27 27 C 1.38139 * 120.05829 * 359.45337 * 26 8 7 28 28 H 1.09007 * 109.47590 * 59.99905 * 1 2 3 29 29 H 1.09000 * 109.47560 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47180 * 300.00523 * 1 2 3 31 31 H 1.08993 * 109.46987 * 239.99646 * 2 1 3 32 32 H 1.09000 * 109.46847 * 119.99691 * 2 1 3 33 33 H 1.09001 * 109.47183 * 59.99937 * 3 2 1 34 34 H 1.09007 * 109.46711 * 299.99729 * 3 2 1 35 35 H 1.08002 * 120.02832 * 359.97438 * 6 5 4 36 36 H 1.07997 * 119.97785 * 180.02562 * 7 6 5 37 37 H 1.09004 * 109.46367 * 180.02562 * 10 9 8 38 38 H 1.08996 * 109.47150 * 299.99671 * 10 9 8 39 39 H 1.09001 * 109.47288 * 60.00142 * 10 9 8 40 40 H 1.09001 * 109.47705 * 300.00363 * 11 9 8 41 41 H 1.09004 * 109.46999 * 60.00100 * 11 9 8 42 42 H 1.09000 * 109.47142 * 179.97438 * 11 9 8 43 43 H 1.00902 * 111.00150 * 303.95692 * 12 9 8 44 44 H 1.09000 * 109.46781 * 59.99783 * 13 12 9 45 45 H 1.09008 * 109.47124 * 300.00142 * 13 12 9 46 46 H 1.08996 * 109.47407 * 60.00219 * 16 14 13 47 47 H 1.09000 * 109.46986 * 179.97438 * 16 14 13 48 48 H 1.09002 * 109.47075 * 299.99262 * 16 14 13 49 49 H 1.09002 * 109.47069 * 304.99600 * 17 14 13 50 50 H 1.08991 * 109.47625 * 64.99919 * 17 14 13 51 51 H 0.96998 * 119.99928 * 179.97438 * 21 20 18 52 52 H 1.08004 * 119.96884 * 179.70621 * 26 8 7 53 53 H 1.07995 * 120.03314 * 180.25484 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0859 2.6534 -0.0012 6 6 5.4713 2.7273 -0.0013 7 6 6.0961 3.9594 -0.0014 8 6 5.3419 5.1183 -0.0009 9 6 6.0261 6.4610 -0.0004 10 6 6.9002 6.5884 -1.2497 11 6 6.9003 6.5875 1.2489 12 7 5.0144 7.5261 0.0007 13 6 5.6461 8.8523 0.0018 14 6 4.5632 9.9331 0.0036 15 1 3.8900 9.7716 0.8456 16 6 3.7708 9.8632 -1.3034 17 6 5.2174 11.3103 0.1304 18 6 4.1480 12.3648 0.2556 19 1 3.1060 12.0810 0.2462 20 6 4.5000 13.6917 0.3833 21 7 5.7688 14.0372 0.3964 22 14 3.1744 14.9987 0.5393 23 1 1.8370 14.3546 0.4990 24 1 3.3381 15.7184 1.8279 25 1 3.2945 15.9621 -0.5844 26 6 3.9611 5.0472 0.0050 27 6 3.3315 3.8177 -0.0011 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9563 -0.8901 35 1 6.0608 1.8224 -0.0004 36 1 7.1745 4.0175 -0.0019 37 1 7.3954 7.5595 -1.2490 38 1 7.6509 5.7982 -1.2500 39 1 6.2773 6.4984 -2.1397 40 1 6.2776 6.4966 2.1389 41 1 7.6510 5.7971 1.2485 42 1 7.3955 7.5585 1.2490 43 1 4.3835 7.4264 -0.7804 44 1 6.2661 8.9601 -0.8882 45 1 6.2664 8.9585 0.8918 46 1 3.3047 8.8821 -1.3938 47 1 2.9990 10.6329 -1.3020 48 1 4.4439 10.0248 -2.1454 49 1 5.8530 11.3305 1.0157 50 1 5.8213 11.5087 -0.7550 51 1 6.0164 14.9708 0.4858 52 1 3.3742 5.9539 0.0102 53 1 2.2529 3.7626 -0.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664434865.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:04 Heat of formation + Delta-G solvation = -55.689278 kcal Electronic energy + Delta-G solvation = -26700.060419 eV Core-core repulsion = 23149.247446 eV Total energy + Delta-G solvation = -3550.812972 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.31408 -39.94463 -38.10006 -36.43011 -34.78556 -34.30507 -32.22810 -31.42299 -29.77921 -28.65971 -28.22928 -27.61071 -26.82797 -24.74221 -23.75861 -23.21412 -22.03367 -20.70621 -20.24146 -19.17408 -18.51988 -17.34134 -17.21774 -17.02303 -16.55989 -16.03599 -15.70652 -15.39648 -15.17020 -14.97841 -14.77982 -14.61829 -14.39563 -14.19458 -14.10263 -13.74803 -13.70024 -13.42947 -13.27157 -13.21264 -12.93049 -12.89151 -12.81465 -12.62347 -12.52091 -12.28405 -12.21250 -12.06762 -11.99103 -11.86867 -11.66290 -11.56547 -11.45345 -11.38066 -11.01595 -10.90132 -10.52924 -9.89544 -9.31967 -8.96798 -8.16635 -6.25271 0.44288 0.50427 1.39702 1.40400 1.53190 2.24943 2.42338 2.83271 3.16757 3.20124 3.73368 3.85858 3.94750 3.98890 4.05025 4.16993 4.19793 4.25775 4.29274 4.37475 4.40610 4.48520 4.51792 4.54682 4.61030 4.66649 4.71630 4.79933 4.82358 4.85322 4.90464 4.95962 4.98807 5.08264 5.11245 5.15240 5.17709 5.19440 5.28364 5.34360 5.36380 5.40811 5.42126 5.48269 5.51679 5.57595 5.71106 5.83395 5.86814 5.91814 6.20010 6.34367 6.49562 6.53675 6.91064 7.42745 8.95455 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.017406 B = 0.002220 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.298388 B =12610.188181 C =13875.568016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C 0.052 3.948 4 O -0.331 6.331 5 C 0.111 3.889 6 C -0.160 4.160 7 C -0.074 4.074 8 C -0.111 4.111 9 C 0.154 3.846 10 C -0.175 4.175 11 C -0.135 4.135 12 N -0.678 5.678 13 C 0.075 3.925 14 C -0.075 4.075 15 H 0.055 0.945 16 C -0.126 4.126 17 C 0.034 3.966 18 C -0.526 4.526 19 H 0.060 0.940 20 C -0.004 4.004 21 N -0.935 5.935 22 Si 0.960 3.040 23 H -0.262 1.262 24 H -0.281 1.281 25 H -0.280 1.280 26 C -0.075 4.075 27 C -0.212 4.212 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.140 0.860 36 H 0.145 0.855 37 H 0.054 0.946 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.077 0.923 42 H 0.051 0.949 43 H 0.342 0.658 44 H 0.028 0.972 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.044 0.956 48 H 0.039 0.961 49 H -0.014 1.014 50 H -0.011 1.011 51 H 0.261 0.739 52 H 0.134 0.866 53 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.702 -29.046 -2.446 29.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.023 4.023 4 O -0.246 6.246 5 C 0.066 3.934 6 C -0.179 4.179 7 C -0.092 4.092 8 C -0.111 4.111 9 C 0.063 3.937 10 C -0.233 4.233 11 C -0.193 4.193 12 N -0.310 5.310 13 C -0.053 4.053 14 C -0.094 4.094 15 H 0.073 0.927 16 C -0.183 4.183 17 C -0.004 4.004 18 C -0.565 4.565 19 H 0.078 0.922 20 C -0.201 4.201 21 N -0.576 5.576 22 Si 0.785 3.215 23 H -0.186 1.186 24 H -0.206 1.206 25 H -0.205 1.205 26 C -0.093 4.093 27 C -0.231 4.231 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.158 0.842 36 H 0.163 0.837 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.070 0.930 43 H 0.163 0.837 44 H 0.047 0.953 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.063 0.937 48 H 0.058 0.942 49 H 0.004 0.996 50 H 0.008 0.992 51 H 0.070 0.930 52 H 0.151 0.849 53 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.621 -29.119 -1.750 29.536 hybrid contribution -0.152 1.482 -0.713 1.652 sum -4.774 -27.637 -2.463 28.154 Atomic orbital electron populations 1.21694 0.93048 1.03209 1.02595 1.21487 0.96983 0.93791 1.03492 1.23076 0.77330 0.99908 1.01953 1.86009 1.22655 1.27114 1.88804 1.19188 0.92773 0.84285 0.97141 1.20570 0.91398 0.99022 1.06870 1.20926 1.00612 0.90365 0.97330 1.19708 0.93733 0.94073 1.03602 1.19685 0.90565 0.88123 0.95326 1.22520 1.00681 1.02583 0.97552 1.21897 0.98876 1.02016 0.96495 1.60738 1.19049 1.01266 1.49948 1.21898 0.95847 0.87838 0.99751 1.21016 0.96586 0.93816 0.98002 0.92654 1.21643 0.99597 1.00755 0.96324 1.18992 0.94893 0.92152 0.94342 1.21675 0.93765 0.92334 1.48683 0.92155 1.25953 0.97522 1.01338 0.95297 1.70106 1.17691 1.17707 1.52050 0.85466 0.79575 0.78801 0.77617 1.18606 1.20650 1.20548 1.21015 0.94502 0.97495 0.96307 1.21393 1.00681 0.92068 1.08928 0.92012 0.90853 0.92090 0.90983 0.91060 0.91651 0.91512 0.84175 0.83713 0.92735 0.90375 0.92742 0.92856 0.90418 0.92975 0.83726 0.95340 0.92081 0.91642 0.93709 0.94152 0.99551 0.99217 0.93009 0.84871 0.84452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 71.98 0.71 -0.45 16 2 C -0.12 -1.32 6.30 30.59 0.19 -1.13 16 3 C 0.05 0.75 4.74 71.98 0.34 1.09 16 4 O -0.33 -6.71 10.14 -92.35 -0.94 -7.65 16 5 C 0.11 2.38 6.69 22.51 0.15 2.53 16 6 C -0.16 -3.19 9.99 22.37 0.22 -2.96 16 7 C -0.07 -1.44 8.70 22.26 0.19 -1.25 16 8 C -0.11 -2.47 4.78 -19.85 -0.09 -2.56 16 9 C 0.15 3.63 0.79 2.78 0.00 3.64 16 10 C -0.17 -3.81 8.04 71.98 0.58 -3.23 16 11 C -0.14 -3.18 8.05 71.98 0.58 -2.61 16 12 N -0.68 -18.78 5.09 -473.91 -2.41 -21.19 16 13 C 0.08 2.56 4.36 86.30 0.38 2.93 16 14 C -0.08 -3.06 2.55 -10.79 -0.03 -3.09 16 15 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 16 C -0.13 -4.55 8.77 71.98 0.63 -3.92 16 17 C 0.03 1.78 4.45 29.85 0.13 1.91 16 18 C -0.53 -29.91 8.41 25.60 0.22 -29.69 16 19 H 0.06 3.31 7.06 -2.91 -0.02 3.29 16 20 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 21 N -0.93 -57.39 13.29 21.45 0.28 -57.11 16 22 Si 0.96 44.81 29.54 68.60 2.03 46.84 16 23 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 25 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 26 C -0.07 -1.71 9.13 22.25 0.20 -1.51 16 27 C -0.21 -4.45 9.04 22.36 0.20 -4.25 16 28 H 0.06 0.45 8.14 -2.38 -0.02 0.44 16 29 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 0.89 7.66 -2.39 -0.02 0.87 16 34 H 0.07 0.88 7.66 -2.38 -0.02 0.86 16 35 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 36 H 0.15 2.18 7.09 -2.91 -0.02 2.16 16 37 H 0.05 1.32 6.41 -2.39 -0.02 1.31 16 38 H 0.08 1.39 7.38 -2.39 -0.02 1.38 16 39 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.08 1.45 7.38 -2.38 -0.02 1.43 16 42 H 0.05 1.34 6.40 -2.39 -0.02 1.32 16 43 H 0.34 8.93 5.82 -89.69 -0.52 8.40 16 44 H 0.03 0.97 6.31 -2.39 -0.02 0.95 16 45 H 0.06 2.19 6.30 -2.38 -0.02 2.18 16 46 H 0.06 1.90 6.68 -2.39 -0.02 1.89 16 47 H 0.04 1.76 6.95 -2.39 -0.02 1.75 16 48 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 49 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 50 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 51 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 52 H 0.13 3.07 6.40 -2.91 -0.02 3.06 16 53 H 0.14 2.39 6.30 -2.91 -0.02 2.37 16 Total: -1.00 -65.38 407.26 4.39 -60.99 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.35 Total: 22.43 kcal Atomic # 6 Polarization: -49.39 SS G_CDS: 5.08 Total: -44.31 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -2.13 Total: -78.29 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.94 Total: -7.65 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -65.38 4.39 -60.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664434865.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.298 kcal (2) G-P(sol) polarization free energy of solvation -65.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds