Wall clock time and date at job start Tue Mar 31 2020 12:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31584 * 122.22518 * 2 1 4 4 C 1.29972 * 117.12917 * 179.97438 * 3 2 1 5 5 N 1.38773 * 125.36192 * 179.97438 * 4 3 2 6 6 C 1.34776 * 119.99835 * 180.02562 * 5 4 3 7 7 O 1.21573 * 120.00424 * 359.97438 * 6 5 4 8 8 C 1.47790 * 119.99853 * 180.02562 * 6 5 4 9 9 C 1.39610 * 120.14734 * 359.72425 * 8 6 5 10 10 C 1.37944 * 119.84750 * 179.79358 * 9 8 6 11 11 C 1.38365 * 120.15094 * 0.47989 * 10 9 8 12 12 C 1.38369 * 120.29780 * 359.74718 * 11 10 9 13 13 C 1.37946 * 120.14418 * 0.02562 * 12 11 10 14 14 S 1.76144 * 109.27405 * 359.97438 * 4 3 2 15 15 C 1.34668 * 122.23269 * 179.97438 * 2 1 3 16 16 S 1.76199 * 125.92850 * 0.02562 * 15 2 1 17 17 C 1.76205 * 99.99817 * 180.02562 * 16 15 2 18 18 H 1.07997 * 120.00086 * 359.97438 * 17 16 15 19 19 C 1.38435 * 119.99828 * 179.97438 * 17 16 15 20 20 N 1.31812 * 119.99815 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00026 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47117 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46890 * 120.00016 * 21 19 17 24 24 H 1.48491 * 109.47216 * 240.00374 * 21 19 17 25 25 H 1.09008 * 109.47060 * 90.02860 * 1 2 3 26 26 H 1.09004 * 109.47639 * 210.02619 * 1 2 3 27 27 H 1.08996 * 109.47561 * 330.03446 * 1 2 3 28 28 H 0.96998 * 119.99895 * 0.02562 * 5 4 3 29 29 H 1.07998 * 120.07221 * 359.97438 * 9 8 6 30 30 H 1.08006 * 119.92485 * 180.23312 * 10 9 8 31 31 H 1.08003 * 119.85324 * 179.72449 * 11 10 9 32 32 H 1.07990 * 119.92687 * 180.02562 * 12 11 10 33 33 H 1.08004 * 120.07148 * 179.97438 * 13 12 11 34 34 H 0.97004 * 119.99786 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2086 1.1131 0.0000 4 6 3.5032 0.9977 0.0005 5 7 4.4037 2.0536 0.0001 6 6 5.7290 1.8089 0.0002 7 8 6.1358 0.6632 0.0011 8 6 6.6880 2.9334 0.0003 9 6 6.2244 4.2503 -0.0055 10 6 7.1250 5.2952 -0.0010 11 6 8.4850 5.0405 -0.0008 12 6 8.9513 3.7378 0.0001 13 6 8.0616 2.6836 0.0004 14 16 3.9346 -0.7101 0.0018 15 6 2.2252 -1.1391 0.0005 16 16 1.5698 -2.7747 0.0006 17 6 3.0667 -3.7042 0.0021 18 1 4.0188 -3.1945 0.0023 19 6 3.0223 -5.0878 0.0032 20 7 1.8602 -5.7099 0.0025 21 14 4.6092 -6.0732 0.0041 22 1 5.7683 -5.1449 0.0041 23 1 4.6602 -6.9282 1.2173 24 1 4.6606 -6.9299 -1.2078 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3634 -0.8898 0.5142 27 1 -0.3634 0.8902 0.5133 28 1 4.0792 2.9677 -0.0003 29 1 5.1632 4.4504 -0.0105 30 1 6.7677 6.3145 -0.0017 31 1 9.1859 5.8623 -0.0018 32 1 10.0140 3.5459 0.0007 33 1 8.4268 1.6672 0.0007 34 1 1.8291 -6.6794 0.0036 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044789146.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:58 Heat of formation + Delta-G solvation = 9.101110 kcal Electronic energy + Delta-G solvation = -20522.122691 eV Core-core repulsion = 17250.866693 eV Total energy + Delta-G solvation = -3271.255997 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 320.039 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.76061 -40.30832 -39.34417 -36.30018 -34.82756 -32.79167 -31.94765 -31.55631 -28.80450 -27.73279 -26.24909 -24.17052 -23.33970 -22.41337 -21.29257 -20.04757 -19.17933 -18.64301 -17.52238 -17.25947 -17.08204 -16.86352 -16.49640 -15.83331 -15.57868 -15.54323 -14.98831 -14.91102 -14.41014 -14.36879 -13.77541 -13.46534 -13.40756 -13.29465 -13.07964 -12.92623 -12.75346 -12.28300 -12.17373 -12.07845 -12.03767 -11.40233 -11.37136 -10.84608 -10.51990 -10.50305 -10.06818 -9.98917 -9.53700 -8.58978 -8.38349 -6.31116 -0.48678 -0.04216 0.18001 0.38353 0.80552 1.25756 1.31335 1.38831 1.45133 1.47689 1.62675 2.01674 2.13443 2.80258 2.82899 3.08098 3.36141 3.70433 3.85581 3.97253 4.23147 4.41825 4.42389 4.47541 4.64717 4.79287 4.84833 4.95407 5.01570 5.03728 5.26068 5.29035 5.40270 5.45136 5.48376 5.87501 5.93436 6.01445 6.68335 6.81579 6.86070 8.49071 Molecular weight = 320.04amu Principal moments of inertia in cm(-1) A = 0.016733 B = 0.003557 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.987216 B = 7870.729356 C = 9528.571311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.037 3.963 3 N -0.479 5.479 4 C 0.224 3.776 5 N -0.599 5.599 6 C 0.550 3.450 7 O -0.541 6.541 8 C -0.150 4.150 9 C -0.084 4.084 10 C -0.124 4.124 11 C -0.082 4.082 12 C -0.129 4.129 13 C -0.075 4.075 14 S 0.157 5.843 15 C -0.280 4.280 16 S 0.104 5.896 17 C -0.576 4.576 18 H 0.080 0.920 19 C 0.036 3.964 20 N -0.895 5.895 21 Si 0.986 3.014 22 H -0.270 1.270 23 H -0.263 1.263 24 H -0.262 1.262 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.433 0.567 29 H 0.147 0.853 30 H 0.164 0.836 31 H 0.162 0.838 32 H 0.153 0.847 33 H 0.122 0.878 34 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.444 22.963 -0.020 25.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.105 4.105 3 N -0.201 5.201 4 C -0.149 4.149 5 N -0.250 5.250 6 C 0.340 3.660 7 O -0.419 6.419 8 C -0.154 4.154 9 C -0.102 4.102 10 C -0.142 4.142 11 C -0.100 4.100 12 C -0.147 4.147 13 C -0.094 4.094 14 S 0.402 5.598 15 C -0.515 4.515 16 S 0.352 5.648 17 C -0.725 4.725 18 H 0.098 0.902 19 C -0.172 4.172 20 N -0.530 5.530 21 Si 0.807 3.193 22 H -0.194 1.194 23 H -0.187 1.187 24 H -0.187 1.187 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.106 0.894 28 H 0.276 0.724 29 H 0.165 0.835 30 H 0.181 0.819 31 H 0.180 0.820 32 H 0.171 0.829 33 H 0.140 0.860 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.206 21.397 -0.019 23.706 hybrid contribution 0.835 -0.269 -0.001 0.877 sum 11.041 21.128 -0.020 23.839 Atomic orbital electron populations 1.20253 0.85460 1.03225 1.03177 1.19728 0.98485 0.84072 1.08168 1.66032 1.02464 1.31434 1.20182 1.24032 0.90226 0.92875 1.07783 1.42351 1.03887 1.08068 1.70740 1.19213 0.81341 0.90104 0.75381 1.90766 1.77554 1.23911 1.49648 1.19490 0.93159 0.92112 1.10591 1.21620 1.01653 0.90629 0.96316 1.21546 0.93077 1.00181 0.99346 1.21901 0.96518 0.97331 0.94206 1.21468 1.00797 0.92280 1.00154 1.21397 0.91552 1.00878 0.95541 1.86080 1.02403 0.98043 1.73274 1.28611 1.01516 1.06147 1.15253 1.82855 1.11124 0.86050 1.84818 1.23488 0.93884 0.94874 1.60225 0.90233 1.25882 1.01413 0.97405 0.92457 1.70096 1.26060 1.10740 1.46074 0.85086 0.77148 0.77962 0.79117 1.19399 1.18715 1.18708 0.90231 0.91290 0.89389 0.72378 0.83538 0.81879 0.82033 0.82949 0.86005 0.90866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.10 10.02 71.23 0.71 -1.38 16 2 C 0.04 1.56 6.73 41.78 0.28 1.84 16 3 N -0.48 -18.79 10.55 -184.94 -1.95 -20.74 16 4 C 0.22 8.64 8.39 179.18 1.50 10.14 16 5 N -0.60 -17.49 5.35 -312.26 -1.67 -19.16 16 6 C 0.55 16.69 7.73 86.77 0.67 17.36 16 7 O -0.54 -21.16 13.86 -3.95 -0.05 -21.21 16 8 C -0.15 -3.28 5.87 -20.09 -0.12 -3.39 16 9 C -0.08 -1.18 9.54 22.53 0.21 -0.97 16 10 C -0.12 -1.16 10.03 22.23 0.22 -0.94 16 11 C -0.08 -0.73 10.04 22.33 0.22 -0.51 16 12 C -0.13 -1.68 10.03 22.23 0.22 -1.46 16 13 C -0.07 -1.52 9.60 22.53 0.22 -1.30 16 14 S 0.16 7.29 18.34 -56.49 -1.04 6.25 16 15 C -0.28 -13.41 6.67 67.00 0.45 -12.96 16 16 S 0.10 5.49 20.74 -56.49 -1.17 4.32 16 17 C -0.58 -33.08 9.26 67.87 0.63 -32.45 16 18 H 0.08 4.59 5.97 -2.91 -0.02 4.57 16 19 C 0.04 1.98 5.49 84.74 0.47 2.44 16 20 N -0.90 -51.09 13.22 21.59 0.29 -50.80 16 21 Si 0.99 43.75 29.55 68.60 2.03 45.78 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 23 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 24 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 25 H 0.08 2.47 8.14 -2.38 -0.02 2.46 16 26 H 0.07 2.40 7.38 -2.38 -0.02 2.39 16 27 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.43 8.98 6.85 -92.71 -0.64 8.35 16 29 H 0.15 1.40 6.41 -2.91 -0.02 1.38 16 30 H 0.16 0.50 8.06 -2.91 -0.02 0.48 16 31 H 0.16 0.40 8.06 -2.91 -0.02 0.37 16 32 H 0.15 1.26 8.06 -2.92 -0.02 1.24 16 33 H 0.12 2.81 7.65 -2.91 -0.02 2.79 16 34 H 0.28 14.77 8.32 -92.70 -0.77 14.00 16 Total: -1.00 -73.26 325.38 2.65 -70.61 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 0.53 Total: 8.53 kcal Atomic # 6 Polarization: -29.27 SS G_CDS: 5.69 Total: -23.58 kcal Atomic # 7 Polarization: -87.37 SS G_CDS: -3.34 Total: -90.71 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.05 Total: -21.21 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: 12.78 SS G_CDS: -2.21 Total: 10.58 kcal Total: -73.26 2.65 -70.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044789146.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.711 kcal (2) G-P(sol) polarization free energy of solvation -73.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds