Wall clock time and date at job start Tue Mar 31 2020 12:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46502 * 109.46998 * 2 1 4 4 C 1.46496 * 119.99959 * 275.00177 * 3 2 1 5 5 C 1.50699 * 109.47201 * 274.99904 * 4 3 2 6 6 H 1.08004 * 120.00125 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00149 * 180.02562 * 5 4 3 8 8 N 1.31521 * 120.00102 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00240 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47073 * 89.99580 * 9 7 5 11 11 H 1.48499 * 109.47351 * 210.00186 * 9 7 5 12 12 H 1.48506 * 109.46765 * 330.00086 * 9 7 5 13 13 S 1.65603 * 119.99897 * 95.00155 * 3 2 1 14 14 O 1.42097 * 106.40433 * 156.45820 * 13 3 2 15 15 O 1.42105 * 106.39868 * 23.53801 * 13 3 2 16 16 C 1.76202 * 107.21713 * 270.00027 * 13 3 2 17 17 C 1.33387 * 122.53578 * 269.97398 * 16 13 3 18 18 S 1.75892 * 109.59079 * 179.75795 * 17 16 13 19 19 C 1.75886 * 90.96907 * 0.34267 * 18 17 16 20 20 N 1.48043 * 125.20197 * 179.91885 * 19 18 17 21 21 O 1.21803 * 119.99854 * 179.69641 * 20 19 18 22 22 O 1.21799 * 119.99943 * 359.42533 * 20 19 18 23 23 C 1.33388 * 109.59251 * 359.66085 * 19 18 17 24 24 H 1.08991 * 109.46857 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46870 * 299.99847 * 1 2 3 26 26 H 1.09004 * 109.46751 * 59.99650 * 1 2 3 27 27 H 1.09001 * 109.46471 * 240.00221 * 2 1 3 28 28 H 1.08997 * 109.46880 * 120.00002 * 2 1 3 29 29 H 1.08993 * 109.47656 * 35.00360 * 4 3 2 30 30 H 1.09008 * 109.47044 * 155.00523 * 4 3 2 31 31 H 0.96994 * 120.00106 * 179.97438 * 8 7 5 32 32 H 1.07995 * 125.20842 * 0.04460 * 17 16 13 33 33 H 1.08008 * 122.53923 * 180.29007 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4947 1.7889 -1.8823 6 1 4.1721 1.1111 -1.3840 7 6 3.8529 2.3615 -3.0843 8 7 5.0195 2.0827 -3.6238 9 14 2.6818 3.5342 -3.9460 10 1 2.9466 4.9224 -3.4897 11 1 2.8864 3.4482 -5.4143 12 1 1.2812 3.1643 -3.6189 13 16 2.4123 2.1202 1.4287 14 8 3.3284 3.1570 1.1050 15 8 2.7096 1.0798 2.3499 16 6 0.9555 2.9118 2.0254 17 6 0.6411 4.1688 1.7087 18 16 -0.8773 4.6091 2.4797 19 6 -0.9980 3.0176 3.2188 20 7 -2.0986 2.5673 4.1005 21 8 -2.0895 1.4385 4.5580 22 8 -3.0108 3.3273 4.3724 23 6 0.0511 2.2766 2.8588 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.3618 1.8099 -1.9452 30 1 2.0922 3.1804 -1.0755 31 1 5.2713 2.4853 -4.4696 32 1 1.2265 4.8156 1.0721 33 1 0.1845 1.2578 3.1919 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119714549.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:43 Heat of formation + Delta-G solvation = -51.808781 kcal Electronic energy + Delta-G solvation = -23010.578763 eV Core-core repulsion = 19293.539501 eV Total energy + Delta-G solvation = -3717.039263 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 320.038 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.33904 -39.60927 -38.47058 -37.84510 -37.82308 -37.00616 -34.66332 -32.37433 -31.86596 -28.99175 -27.99675 -25.63143 -24.62117 -23.23178 -22.35037 -21.06185 -19.78672 -19.52124 -19.04956 -18.89545 -18.54744 -18.16400 -17.96061 -17.07597 -16.18891 -15.67131 -15.12329 -15.08980 -14.79687 -14.65910 -14.54982 -14.18458 -13.71946 -13.55632 -13.35010 -13.16781 -13.08881 -12.94459 -12.76683 -12.74487 -12.62149 -12.50255 -12.24036 -12.15137 -12.01560 -11.72510 -11.65555 -11.12689 -10.74853 -10.33018 -9.86260 -8.25209 -6.31580 -1.65914 -0.93960 -0.69700 -0.39617 -0.00565 0.43045 0.54896 1.40131 1.43209 1.51755 1.98559 2.38259 2.65553 3.02410 3.09856 3.43091 3.60622 3.72379 3.89001 4.17989 4.25986 4.38041 4.40872 4.61696 4.83363 4.91009 5.01122 5.02932 5.34153 5.40105 5.49568 5.70856 6.23663 6.32131 6.72959 7.31476 8.92198 Molecular weight = 320.04amu Principal moments of inertia in cm(-1) A = 0.019057 B = 0.004569 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.905026 B = 6127.143943 C = 6510.296730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.105 3.895 3 N -0.978 5.978 4 C 0.229 3.771 5 C -0.541 4.541 6 H 0.030 0.970 7 C 0.008 3.992 8 N -0.950 5.950 9 Si 0.938 3.062 10 H -0.263 1.263 11 H -0.287 1.287 12 H -0.225 1.225 13 S 2.707 3.293 14 O -0.968 6.968 15 O -0.977 6.977 16 C -0.708 4.708 17 C -0.047 4.047 18 S 0.364 5.636 19 C -0.215 4.215 20 N 0.064 4.936 21 O -0.162 6.162 22 O -0.157 6.157 23 C 0.042 3.958 24 H 0.088 0.912 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.267 0.733 32 H 0.229 0.771 33 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.090 5.137 9.941 19.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.020 4.020 3 N -0.817 5.817 4 C 0.105 3.895 5 C -0.580 4.580 6 H 0.048 0.952 7 C -0.190 4.190 8 N -0.590 5.590 9 Si 0.759 3.241 10 H -0.187 1.187 11 H -0.213 1.213 12 H -0.147 1.147 13 S 2.795 3.205 14 O -0.958 6.958 15 O -0.968 6.968 16 C -0.806 4.806 17 C -0.187 4.187 18 S 0.627 5.373 19 C -0.417 4.417 20 N 0.583 4.417 21 O -0.377 6.377 22 O -0.373 6.373 23 C 0.007 3.993 24 H 0.107 0.893 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.100 0.900 28 H 0.106 0.894 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.246 0.754 33 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -15.636 6.683 9.838 19.646 hybrid contribution 0.358 -1.041 -0.385 1.166 sum -15.279 5.642 9.453 18.832 Atomic orbital electron populations 1.22237 0.94385 1.03762 1.02228 1.21495 0.95256 0.80930 1.04306 1.57136 1.81609 1.22502 1.20464 1.19355 0.96038 0.92151 0.81949 1.21670 1.02429 1.27878 1.06071 0.95150 1.25908 0.96927 0.98241 0.97876 1.70074 1.23265 1.45946 1.19687 0.85874 0.81071 0.79515 0.77591 1.18745 1.21256 1.14750 1.01496 0.73557 0.73050 0.72417 1.93589 1.59379 1.59005 1.83812 1.93509 1.83251 1.56708 1.63301 1.30000 1.26016 1.07504 1.17092 1.26938 0.98421 0.97045 0.96328 1.84491 1.13789 1.02554 1.36422 1.26266 0.97857 1.05268 1.12265 1.42568 1.00158 1.00286 0.98722 1.94600 1.83700 1.05147 1.54208 1.94561 1.27470 1.51971 1.63303 1.19883 0.87749 1.02094 0.89541 0.89326 0.92861 0.91777 0.89987 0.89358 0.92261 0.93544 0.92451 0.75438 0.79980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.64 10.24 71.98 0.74 -2.90 16 2 C 0.11 3.07 6.40 86.38 0.55 3.62 16 3 N -0.98 -33.85 2.77 -519.84 -1.44 -35.29 16 4 C 0.23 9.17 4.17 85.63 0.36 9.52 16 5 C -0.54 -28.92 9.94 25.60 0.25 -28.66 16 6 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 7 C 0.01 0.45 5.47 84.65 0.46 0.92 16 8 N -0.95 -57.40 13.96 21.45 0.30 -57.10 16 9 Si 0.94 38.87 27.47 68.60 1.88 40.75 16 10 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 11 H -0.29 -12.02 7.11 99.48 0.71 -11.31 16 12 H -0.23 -7.82 6.54 99.48 0.65 -7.17 16 13 S 2.71 90.34 5.71 -56.49 -0.32 90.02 16 14 O -0.97 -38.97 16.61 -128.00 -2.13 -41.10 16 15 O -0.98 -35.50 16.19 -128.00 -2.07 -37.57 16 16 C -0.71 -16.65 5.89 21.21 0.12 -16.53 16 17 C -0.05 -0.82 10.70 66.72 0.71 -0.11 16 18 S 0.36 5.31 23.14 -56.49 -1.31 4.00 16 19 C -0.22 -4.59 7.50 80.82 0.61 -3.98 16 20 N 0.06 1.58 4.46 -48.12 -0.21 1.37 16 21 O -0.16 -4.34 18.94 18.88 0.36 -3.98 16 22 O -0.16 -3.90 19.08 18.89 0.36 -3.54 16 23 C 0.04 0.93 8.37 21.22 0.18 1.11 16 24 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.05 1.05 7.13 -2.39 -0.02 1.03 16 26 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 27 H 0.08 2.58 8.11 -2.39 -0.02 2.56 16 28 H 0.09 2.48 6.91 -2.39 -0.02 2.46 16 29 H 0.06 2.14 7.17 -2.39 -0.02 2.13 16 30 H 0.05 1.71 7.04 -2.38 -0.02 1.69 16 31 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 32 H 0.23 3.04 8.00 -2.91 -0.02 3.01 16 33 H 0.18 3.89 7.92 -2.91 -0.02 3.86 16 Total: -1.00 -72.45 322.67 0.51 -71.94 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: 1.10 Total: 7.52 kcal Atomic # 6 Polarization: -41.00 SS G_CDS: 3.99 Total: -37.02 kcal Atomic # 7 Polarization: -89.67 SS G_CDS: -1.35 Total: -91.02 kcal Atomic # 8 Polarization: -82.71 SS G_CDS: -3.48 Total: -86.19 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 1.88 Total: 40.75 kcal Atomic # 16 Polarization: 95.65 SS G_CDS: -1.63 Total: 94.02 kcal Total: -72.45 0.51 -71.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119714549.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.134 kcal (2) G-P(sol) polarization free energy of solvation -72.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds