Wall clock time and date at job start Tue Mar 31 2020 12:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34231 * 117.00409 * 2 1 4 4 O 1.20827 * 119.99679 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00266 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.47013 * 180.02562 * 5 3 2 7 7 C 1.36885 * 119.99627 * 264.02691 * 6 5 3 8 8 H 1.07992 * 120.00214 * 38.56519 * 7 6 5 9 9 C 1.38994 * 119.99541 * 218.56092 * 7 6 5 10 10 N 1.31408 * 120.00557 * 12.41139 * 9 7 6 11 11 Si 1.86799 * 119.99891 * 192.41225 * 9 7 6 12 12 H 1.48507 * 109.47409 * 89.99818 * 11 9 7 13 13 H 1.48500 * 109.47403 * 209.99962 * 11 9 7 14 14 H 1.48505 * 109.47301 * 330.00163 * 11 9 7 15 15 C 1.34774 * 119.99923 * 84.02722 * 6 5 3 16 16 O 1.21762 * 119.99831 * 183.96615 * 15 6 5 17 17 C 1.46411 * 120.00145 * 3.96328 * 15 6 5 18 18 C 1.38088 * 126.22943 * 164.80734 * 17 15 6 19 19 C 1.39751 * 107.12963 * 180.10509 * 18 17 15 20 20 Cl 1.73604 * 126.05562 * 179.87198 * 19 18 17 21 21 C 1.35761 * 107.88928 * 359.61833 * 19 18 17 22 22 Cl 1.73599 * 125.58424 * 180.27640 * 21 19 18 23 23 N 1.35718 * 108.83806 * 0.23372 * 21 19 18 24 24 H 0.97005 * 125.69735 * 180.02562 * 23 21 19 25 25 H 1.08997 * 109.47381 * 299.99603 * 1 2 3 26 26 H 1.09006 * 109.47050 * 60.00151 * 1 2 3 27 27 H 1.08994 * 109.47356 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47403 * 59.99906 * 5 3 2 29 29 H 1.09006 * 109.47138 * 299.99909 * 5 3 2 30 30 H 0.96998 * 119.99997 * 184.86715 * 10 9 7 31 31 H 1.08008 * 126.43612 * 359.96391 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.2945 3.3013 -1.1777 8 1 3.7189 3.0929 -2.0674 9 6 5.3529 4.2007 -1.2295 10 7 6.2013 4.2756 -0.2287 11 14 5.5696 5.3032 -2.7218 12 1 4.8267 6.5719 -2.5122 13 1 7.0120 5.5999 -2.9129 14 1 5.0421 4.6142 -3.9270 15 6 4.0559 3.3601 1.1621 16 8 4.3308 4.5462 1.1562 17 6 3.8058 2.6729 2.4306 18 6 4.1244 3.1421 3.6896 19 6 3.7130 2.1714 4.6069 20 17 3.8813 2.2598 6.3325 21 6 3.1534 1.1496 3.9099 22 17 2.4820 -0.2952 4.5995 23 7 3.2039 1.4429 2.5858 24 1 2.8715 0.8808 1.8685 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 3.9564 0.7805 -0.8891 29 1 3.9557 0.7808 0.8909 30 1 6.8976 4.9509 -0.2327 31 1 4.6038 4.0818 3.9217 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120521095.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:58 Heat of formation + Delta-G solvation = -58.962825 kcal Electronic energy + Delta-G solvation = -23093.942301 eV Core-core repulsion = 19236.672309 eV Total energy + Delta-G solvation = -3857.269993 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 320.016 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.91953 -41.51679 -39.83872 -37.89143 -37.68517 -37.51534 -36.31489 -34.18260 -32.35591 -30.28576 -30.24368 -27.93198 -26.78486 -23.73505 -22.60468 -22.27309 -21.45890 -19.83838 -18.95708 -18.64567 -17.89413 -17.39042 -17.30111 -16.63480 -16.29948 -15.90722 -15.74848 -15.12857 -14.81507 -14.55405 -14.48719 -14.29974 -14.24181 -13.45662 -13.18849 -13.06184 -12.97922 -12.96491 -12.86280 -12.59917 -12.45546 -12.06435 -11.93670 -11.90200 -11.88047 -11.09161 -10.51105 -10.12287 -9.44211 -9.30359 -8.24632 -6.12256 0.24809 0.32557 0.83864 1.04436 1.16806 1.39122 1.46443 1.49813 1.55739 2.09420 2.27148 2.67806 2.87536 3.15100 3.59603 3.69137 3.81406 3.90282 4.26189 4.26580 4.30173 4.33073 4.56991 4.66611 5.10095 5.14180 5.30722 5.41356 5.76010 6.03573 6.53309 6.77259 6.93849 7.37372 8.02353 8.79282 Molecular weight = 320.02amu Principal moments of inertia in cm(-1) A = 0.013408 B = 0.005671 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.848646 B = 4935.957814 C = 6673.020389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.354 6.354 3 C 0.423 3.577 4 O -0.512 6.512 5 C 0.088 3.912 6 N -0.442 5.442 7 C -0.355 4.355 8 H 0.091 0.909 9 C 0.011 3.989 10 N -0.848 5.848 11 Si 0.980 3.020 12 H -0.291 1.291 13 H -0.278 1.278 14 H -0.251 1.251 15 C 0.528 3.472 16 O -0.542 6.542 17 C 0.003 3.997 18 C -0.119 4.119 19 C -0.094 4.094 20 Cl -0.019 7.019 21 C 0.081 3.919 22 Cl 0.023 6.977 23 N -0.529 5.529 24 H 0.425 0.575 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.144 0.856 28 H 0.154 0.846 29 H 0.118 0.882 30 H 0.265 0.735 31 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.464 -13.460 5.963 16.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.270 6.270 3 C 0.264 3.736 4 O -0.399 6.399 5 C -0.039 4.039 6 N -0.162 5.162 7 C -0.482 4.482 8 H 0.108 0.892 9 C -0.197 4.197 10 N -0.483 5.483 11 Si 0.805 3.195 12 H -0.218 1.218 13 H -0.203 1.203 14 H -0.175 1.175 15 C 0.317 3.683 16 O -0.419 6.419 17 C -0.111 4.111 18 C -0.145 4.145 19 C -0.129 4.129 20 Cl 0.009 6.991 21 C -0.062 4.062 22 Cl 0.052 6.948 23 N -0.139 5.139 24 H 0.274 0.726 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.162 0.838 28 H 0.172 0.828 29 H 0.135 0.865 30 H 0.075 0.925 31 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -7.462 -12.725 6.026 15.935 hybrid contribution -0.242 0.540 -0.680 0.902 sum -7.703 -12.185 5.346 15.375 Atomic orbital electron populations 1.23648 0.74525 1.06248 1.02470 1.86526 1.25255 1.31471 1.83772 1.25049 0.93362 0.82096 0.73103 1.90728 1.67209 1.37619 1.44341 1.21751 0.86559 0.87456 1.08091 1.43045 1.59549 1.07239 1.06394 1.19404 1.12946 1.27874 0.87962 0.89168 1.26084 0.93512 0.99863 1.00272 1.70007 1.14247 1.31380 1.32669 0.85142 0.77267 0.78359 0.78768 1.21782 1.20321 1.17470 1.16928 0.83056 0.86235 0.82051 1.90663 1.49575 1.15974 1.85674 1.20949 1.06742 0.87026 0.96395 1.21093 1.04309 1.00499 0.88626 1.19522 1.10512 0.96153 0.86674 1.98313 1.96847 1.98186 1.05722 1.20691 1.08226 0.93371 0.83867 1.98392 1.83273 1.31940 1.81212 1.43088 1.47356 1.16914 1.06568 0.72648 0.92294 0.92103 0.83792 0.82829 0.86500 0.92542 0.82669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 10.56 113.37 1.20 1.66 16 2 O -0.35 -8.96 10.54 -51.43 -0.54 -9.50 16 3 C 0.42 14.37 5.86 71.24 0.42 14.79 16 4 O -0.51 -21.70 16.04 21.96 0.35 -21.35 16 5 C 0.09 3.13 5.53 85.63 0.47 3.60 16 6 N -0.44 -21.56 2.11 -644.41 -1.36 -22.92 16 7 C -0.36 -18.83 9.29 84.09 0.78 -18.05 16 8 H 0.09 4.56 7.86 -2.91 -0.02 4.53 16 9 C 0.01 0.58 4.59 84.94 0.39 0.97 16 10 N -0.85 -49.35 10.85 21.67 0.24 -49.12 16 11 Si 0.98 43.59 29.57 68.60 2.03 45.62 16 12 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 13 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 14 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 15 C 0.53 27.69 6.58 86.37 0.57 28.26 16 16 O -0.54 -33.18 14.10 -4.55 -0.06 -33.24 16 17 C 0.00 0.15 6.60 40.30 0.27 0.41 16 18 C -0.12 -4.68 10.68 22.60 0.24 -4.44 16 19 C -0.09 -3.07 6.66 22.06 0.15 -2.92 16 20 Cl -0.02 -0.52 29.12 -2.72 -0.08 -0.60 16 21 C 0.08 2.48 7.75 83.52 0.65 3.13 16 22 Cl 0.02 0.54 29.13 -2.72 -0.08 0.46 16 23 N -0.53 -17.98 4.84 -174.46 -0.84 -18.82 16 24 H 0.43 13.06 3.76 -92.70 -0.35 12.71 16 25 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16 26 H 0.06 1.23 8.13 -2.38 -0.02 1.21 16 27 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.15 4.65 7.99 -2.39 -0.02 4.63 16 29 H 0.12 3.67 5.09 -2.38 -0.01 3.66 16 30 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 31 H 0.16 6.19 8.06 -2.91 -0.02 6.16 16 Total: -1.00 -71.55 307.18 5.64 -65.90 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.87 Total: 16.18 kcal Atomic # 6 Polarization: 22.27 SS G_CDS: 5.13 Total: 27.39 kcal Atomic # 7 Polarization: -88.89 SS G_CDS: -1.97 Total: -90.86 kcal Atomic # 8 Polarization: -63.84 SS G_CDS: -0.25 Total: -64.09 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -0.16 Total: -0.15 kcal Total: -71.55 5.64 -65.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120521095.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.942 kcal (2) G-P(sol) polarization free energy of solvation -71.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds