Wall clock time and date at job start Tue Mar 31 2020 12:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39734 * 120.20477 * 97.76452 * 3 2 1 5 5 C 1.37788 * 119.91885 * 180.02562 * 4 3 2 6 6 C 1.50695 * 119.82968 * 179.97438 * 5 4 3 7 7 F 1.39900 * 109.47198 * 89.99968 * 6 5 4 8 8 F 1.39898 * 109.47514 * 209.99853 * 6 5 4 9 9 F 1.39899 * 109.47340 * 330.00229 * 6 5 4 10 10 C 1.38575 * 120.34542 * 0.02562 * 5 4 3 11 11 C 1.38019 * 120.42292 * 359.71508 * 10 5 4 12 12 C 1.38891 * 120.06777 * 0.56528 * 11 10 5 13 13 N 1.39022 * 120.17300 * 179.71691 * 12 11 10 14 14 S 1.65604 * 119.99761 * 327.54485 * 13 12 11 15 15 O 1.42093 * 106.40329 * 314.12294 * 14 13 12 16 16 O 1.42105 * 106.40096 * 181.20355 * 14 13 12 17 17 C 1.76193 * 107.21928 * 67.66809 * 14 13 12 18 18 H 1.08005 * 120.00395 * 359.97438 * 17 14 13 19 19 C 1.37880 * 120.00287 * 180.02562 * 17 14 13 20 20 N 1.31520 * 119.99847 * 359.97438 * 19 17 14 21 21 Si 1.86797 * 120.00298 * 179.97438 * 19 17 14 22 22 H 1.48505 * 109.47194 * 59.99976 * 21 19 17 23 23 H 1.48506 * 109.47028 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47176 * 299.99895 * 21 19 17 25 25 H 1.07996 * 120.04083 * 359.97438 * 4 3 2 26 26 H 1.08006 * 119.78829 * 180.02562 * 10 5 4 27 27 H 1.07997 * 119.96845 * 180.27770 * 11 10 5 28 28 H 0.96998 * 120.00418 * 147.54321 * 13 12 11 29 29 H 0.96996 * 119.99917 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2710 0.1641 -1.1966 5 6 4.6488 0.1633 -1.1898 6 6 5.4049 0.3391 -2.4815 7 9 5.6387 1.7005 -2.7033 8 9 6.6270 -0.3371 -2.4024 9 9 4.6507 -0.1826 -3.5380 10 6 5.3430 0.0005 -0.0016 11 6 4.6631 -0.1568 1.1892 12 6 3.2743 -0.1645 1.2017 13 7 2.5872 -0.3286 2.3991 14 16 3.2334 -1.2644 3.6029 15 8 3.6923 -2.4570 2.9815 16 8 2.2919 -1.2553 4.6673 17 6 4.6665 -0.4307 4.1993 18 1 4.9597 0.5151 3.7681 19 6 5.4144 -0.9863 5.2157 20 7 5.0577 -2.1383 5.7405 21 14 6.9341 -0.1028 5.8475 22 1 6.5483 1.2312 6.3738 23 1 7.5557 -0.9021 6.9338 24 1 7.9062 0.0653 4.7375 25 1 2.7349 0.2901 -2.1256 26 1 6.4231 0.0017 -0.0067 27 1 5.2115 -0.2786 2.1115 28 1 1.7294 0.1050 2.5295 29 1 5.5836 -2.5289 6.4558 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125464653.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:13 Heat of formation + Delta-G solvation = -187.122715 kcal Electronic energy + Delta-G solvation = -24297.729861 eV Core-core repulsion = 19897.522254 eV Total energy + Delta-G solvation = -4400.207607 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 320.023 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.19822 -47.71510 -47.65484 -39.97094 -36.47913 -35.71862 -35.22643 -34.37858 -33.40159 -31.58411 -30.33380 -26.56854 -25.54818 -24.19429 -22.31243 -19.78616 -19.25598 -18.53111 -18.42608 -18.12408 -17.62942 -16.93426 -16.56063 -15.61829 -15.00530 -14.66583 -14.52474 -14.34593 -14.24020 -14.10917 -14.07302 -13.88486 -13.81519 -13.73375 -13.60272 -13.20135 -12.75184 -12.66539 -12.26260 -11.95834 -11.86841 -11.39896 -11.32296 -11.15600 -10.82611 -10.71430 -10.62193 -10.59170 -9.46542 -9.19495 -9.15151 -8.40065 -6.97174 -5.65329 0.61381 0.93555 1.73376 2.50358 2.69889 2.79018 2.94311 3.00764 3.04362 3.58999 3.63123 3.76107 3.82138 4.07587 4.10106 4.38077 4.38601 4.60481 4.85863 5.07459 5.23714 5.39140 5.55015 5.72170 5.93164 5.94990 6.13023 6.34256 6.56508 7.03925 7.22428 7.43887 7.61548 8.58783 9.97430 Molecular weight = 320.02amu Principal moments of inertia in cm(-1) A = 0.014199 B = 0.005049 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.496163 B = 5543.859176 C = 6997.572638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C 0.262 3.738 3 C -0.082 4.082 4 C 0.006 3.994 5 C -0.228 4.228 6 C 0.516 3.484 7 F -0.178 7.178 8 F -0.175 7.175 9 F -0.179 7.179 10 C -0.004 4.004 11 C -0.174 4.174 12 C 0.283 3.717 13 N -1.063 6.063 14 S 2.688 3.312 15 O -0.979 6.979 16 O -0.986 6.986 17 C -1.024 5.024 18 H 0.114 0.886 19 C 0.135 3.865 20 N -0.836 5.836 21 Si 0.925 3.075 22 H -0.262 1.262 23 H -0.275 1.275 24 H -0.259 1.259 25 H 0.145 0.855 26 H 0.148 0.852 27 H 0.184 0.816 28 H 0.418 0.582 29 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.722 6.490 -12.437 14.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.091 5.091 2 C -0.053 4.053 3 C -0.091 4.091 4 C -0.015 4.015 5 C -0.231 4.231 6 C 0.462 3.538 7 F -0.159 7.159 8 F -0.157 7.157 9 F -0.161 7.161 10 C -0.024 4.024 11 C -0.195 4.195 12 C 0.178 3.822 13 N -0.800 5.800 14 S 2.789 3.211 15 O -0.969 6.969 16 O -0.976 6.976 17 C -1.157 5.157 18 H 0.132 0.868 19 C -0.085 4.085 20 N -0.464 5.464 21 Si 0.748 3.252 22 H -0.186 1.186 23 H -0.200 1.200 24 H -0.184 1.184 25 H 0.163 0.837 26 H 0.166 0.834 27 H 0.200 0.800 28 H 0.253 0.747 29 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.693 5.377 -11.964 13.226 hybrid contribution 1.214 1.053 0.252 1.627 sum 2.907 6.431 -11.711 13.673 Atomic orbital electron populations 1.81249 1.11649 1.09536 1.06684 1.25315 0.92245 0.93549 0.94209 1.15655 0.84706 1.15467 0.93249 1.20607 0.92127 0.91846 0.96937 1.19643 0.94208 1.16203 0.92997 1.18125 0.77396 0.73910 0.84383 1.93225 1.94720 1.32540 1.95459 1.93199 1.45868 1.80214 1.96398 1.93184 1.76055 1.86721 1.60099 1.20949 1.01025 0.90695 0.89738 1.21988 0.91869 1.03669 1.01939 1.17568 0.91316 0.88754 0.84593 1.54670 1.32454 1.65465 1.27362 1.01638 0.75417 0.73180 0.70851 1.93441 1.82183 1.44747 1.76515 1.93427 1.65502 1.86691 1.51993 1.30410 1.31388 1.21268 1.32657 0.86822 1.24769 0.98009 0.93292 0.92465 1.69866 1.38614 1.15304 1.22647 0.86107 0.79991 0.79992 0.79095 1.18648 1.19964 1.18356 0.83726 0.83396 0.79958 0.74740 0.89297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.72 18.54 41.84 0.78 -5.94 15 2 C 0.26 3.85 14.36 -22.47 -0.32 3.53 15 3 C -0.08 -1.13 5.76 -106.61 -0.61 -1.75 15 4 C 0.01 0.07 9.10 -39.19 -0.36 -0.29 15 5 C -0.23 -2.61 5.45 -104.66 -0.57 -3.18 15 6 C 0.52 5.53 3.36 36.00 0.12 5.65 15 7 F -0.18 -1.92 17.30 2.25 0.04 -1.88 15 8 F -0.18 -1.95 16.44 2.25 0.04 -1.91 15 9 F -0.18 -1.92 16.44 2.25 0.04 -1.88 15 10 C 0.00 -0.05 9.38 -39.54 -0.37 -0.42 15 11 C -0.17 -2.65 8.89 -39.42 -0.35 -3.00 15 12 C 0.28 4.52 6.20 -83.56 -0.52 4.00 15 13 N -1.06 -19.21 5.51 32.56 0.18 -19.03 15 14 S 2.69 64.02 4.62 -107.50 -0.50 63.52 15 15 O -0.98 -25.65 17.41 -57.17 -1.00 -26.65 15 16 O -0.99 -26.66 18.02 -57.17 -1.03 -27.69 15 17 C -1.02 -24.12 7.56 30.60 0.23 -23.88 15 18 H 0.11 2.31 6.91 -52.48 -0.36 1.95 15 19 C 0.13 3.31 5.46 -17.82 -0.10 3.22 15 20 N -0.84 -22.22 13.19 55.43 0.73 -21.49 15 21 Si 0.93 18.09 29.54 -169.99 -5.02 13.07 15 22 H -0.26 -5.02 7.11 56.52 0.40 -4.61 15 23 H -0.27 -5.26 7.11 56.52 0.40 -4.85 15 24 H -0.26 -4.77 7.11 56.52 0.40 -4.36 15 25 H 0.15 1.28 7.58 -52.49 -0.40 0.89 15 26 H 0.15 1.45 7.59 -52.48 -0.40 1.05 15 27 H 0.18 3.05 4.47 -52.49 -0.23 2.82 15 28 H 0.42 6.67 8.22 -34.47 -0.28 6.39 15 29 H 0.30 7.09 8.31 -40.82 -0.34 6.75 15 LS Contribution 296.94 15.07 4.47 4.47 Total: -1.00 -30.58 296.94 -4.93 -35.51 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -0.81 Total: 6.02 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -2.85 Total: -16.11 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 1.69 Total: -46.47 kcal Atomic # 8 Polarization: -52.32 SS G_CDS: -2.03 Total: -54.34 kcal Atomic # 9 Polarization: -5.79 SS G_CDS: 0.11 Total: -5.67 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.02 Total: 13.07 kcal Atomic # 16 Polarization: 64.02 SS G_CDS: -0.50 Total: 63.52 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.58 -4.93 -35.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125464653.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.609 kcal (2) G-P(sol) polarization free energy of solvation -30.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds