Wall clock time and date at job start Tue Mar 31 2020 12:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39734 * 120.20477 * 97.76452 * 3 2 1 5 5 C 1.37788 * 119.91885 * 180.02562 * 4 3 2 6 6 C 1.50695 * 119.82968 * 179.97438 * 5 4 3 7 7 F 1.39900 * 109.47198 * 89.99968 * 6 5 4 8 8 F 1.39898 * 109.47514 * 209.99853 * 6 5 4 9 9 F 1.39899 * 109.47340 * 330.00229 * 6 5 4 10 10 C 1.38575 * 120.34542 * 0.02562 * 5 4 3 11 11 C 1.38019 * 120.42292 * 359.71508 * 10 5 4 12 12 C 1.38891 * 120.06777 * 0.56528 * 11 10 5 13 13 N 1.39022 * 120.17300 * 179.71691 * 12 11 10 14 14 S 1.65604 * 119.99761 * 327.54485 * 13 12 11 15 15 O 1.42093 * 106.40329 * 314.12294 * 14 13 12 16 16 O 1.42105 * 106.40096 * 181.20355 * 14 13 12 17 17 C 1.76193 * 107.21928 * 67.66809 * 14 13 12 18 18 H 1.08005 * 120.00395 * 359.97438 * 17 14 13 19 19 C 1.37880 * 120.00287 * 180.02562 * 17 14 13 20 20 N 1.31520 * 119.99847 * 359.97438 * 19 17 14 21 21 Si 1.86797 * 120.00298 * 179.97438 * 19 17 14 22 22 H 1.48505 * 109.47194 * 59.99976 * 21 19 17 23 23 H 1.48506 * 109.47028 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47176 * 299.99895 * 21 19 17 25 25 H 1.07996 * 120.04083 * 359.97438 * 4 3 2 26 26 H 1.08006 * 119.78829 * 180.02562 * 10 5 4 27 27 H 1.07997 * 119.96845 * 180.27770 * 11 10 5 28 28 H 0.96998 * 120.00418 * 147.54321 * 13 12 11 29 29 H 0.96996 * 119.99917 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2710 0.1641 -1.1966 5 6 4.6488 0.1633 -1.1898 6 6 5.4049 0.3391 -2.4815 7 9 5.6387 1.7005 -2.7033 8 9 6.6270 -0.3371 -2.4024 9 9 4.6507 -0.1826 -3.5380 10 6 5.3430 0.0005 -0.0016 11 6 4.6631 -0.1568 1.1892 12 6 3.2743 -0.1645 1.2017 13 7 2.5872 -0.3286 2.3991 14 16 3.2334 -1.2644 3.6029 15 8 3.6923 -2.4570 2.9815 16 8 2.2919 -1.2553 4.6673 17 6 4.6665 -0.4307 4.1993 18 1 4.9597 0.5151 3.7681 19 6 5.4144 -0.9863 5.2157 20 7 5.0577 -2.1383 5.7405 21 14 6.9341 -0.1028 5.8475 22 1 6.5483 1.2312 6.3738 23 1 7.5557 -0.9021 6.9338 24 1 7.9062 0.0653 4.7375 25 1 2.7349 0.2901 -2.1256 26 1 6.4231 0.0017 -0.0067 27 1 5.2115 -0.2786 2.1115 28 1 1.7294 0.1050 2.5295 29 1 5.5836 -2.5289 6.4558 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125464653.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:13 Heat of formation + Delta-G solvation = -208.745487 kcal Electronic energy + Delta-G solvation = -24298.667495 eV Core-core repulsion = 19897.522254 eV Total energy + Delta-G solvation = -4401.145241 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 320.023 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.05852 -48.57362 -48.50904 -41.10889 -37.73755 -37.58674 -36.57850 -36.34828 -35.24152 -32.68374 -31.50172 -28.41511 -26.55212 -25.30607 -23.45687 -21.22065 -20.59366 -19.79131 -19.41194 -19.36477 -18.86955 -18.35686 -17.90564 -17.18297 -16.44690 -16.06991 -15.85666 -15.49927 -15.36954 -15.31878 -15.11744 -14.94834 -14.76540 -14.70354 -14.66331 -14.31223 -14.04065 -13.93868 -13.84971 -13.43579 -13.03521 -12.94270 -12.90318 -12.68108 -12.63970 -12.52660 -12.29694 -12.01554 -11.20004 -10.99030 -10.24386 -9.65230 -8.78716 -7.54889 -0.50247 -0.14873 0.00682 1.38235 1.42915 1.43646 1.57432 1.65496 1.72371 2.20113 2.46954 2.52795 2.58137 2.59628 2.83040 3.15705 3.48066 3.51245 3.58108 3.80815 3.89258 4.13581 4.31861 4.39406 4.75126 4.84207 4.94932 5.08375 5.24464 5.43408 5.83684 5.85145 6.26252 6.73597 8.18134 Molecular weight = 320.02amu Principal moments of inertia in cm(-1) A = 0.014199 B = 0.005049 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.496163 B = 5543.859176 C = 6997.572638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.276 3.724 3 C -0.080 4.080 4 C 0.023 3.977 5 C -0.219 4.219 6 C 0.525 3.475 7 F -0.175 7.175 8 F -0.175 7.175 9 F -0.176 7.176 10 C 0.010 3.990 11 C -0.192 4.192 12 C 0.256 3.744 13 N -1.057 6.057 14 S 2.695 3.305 15 O -1.014 7.014 16 O -1.031 7.031 17 C -1.027 5.027 18 H 0.142 0.858 19 C 0.077 3.923 20 N -0.889 5.889 21 Si 0.991 3.009 22 H -0.253 1.253 23 H -0.272 1.272 24 H -0.236 1.236 25 H 0.176 0.824 26 H 0.175 0.825 27 H 0.167 0.833 28 H 0.426 0.574 29 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.544 8.134 -14.333 17.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.038 4.038 3 C -0.088 4.088 4 C 0.002 3.998 5 C -0.222 4.222 6 C 0.471 3.529 7 F -0.156 7.156 8 F -0.157 7.157 9 F -0.158 7.158 10 C -0.009 4.009 11 C -0.213 4.213 12 C 0.153 3.847 13 N -0.799 5.799 14 S 2.798 3.202 15 O -1.003 7.003 16 O -1.021 7.021 17 C -1.162 5.162 18 H 0.160 0.840 19 C -0.137 4.137 20 N -0.520 5.520 21 Si 0.809 3.191 22 H -0.177 1.177 23 H -0.197 1.197 24 H -0.159 1.159 25 H 0.193 0.807 26 H 0.192 0.808 27 H 0.184 0.816 28 H 0.262 0.738 29 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.495 7.021 -13.898 15.958 hybrid contribution 0.644 0.574 0.680 1.098 sum 4.139 7.596 -13.218 15.797 Atomic orbital electron populations 1.81266 1.12464 1.10603 1.07554 1.25409 0.92307 0.92726 0.93397 1.15616 0.84099 1.15841 0.93254 1.20911 0.92216 0.89630 0.97047 1.19774 0.94312 1.14849 0.93276 1.17873 0.77213 0.73989 0.83843 1.93241 1.94678 1.32321 1.95390 1.93209 1.45843 1.80245 1.96371 1.93200 1.75986 1.86700 1.59868 1.21196 1.02336 0.88612 0.88806 1.21893 0.91564 1.05289 1.02546 1.17786 0.91832 0.90889 0.84205 1.53904 1.32901 1.65572 1.27517 1.01050 0.75253 0.73247 0.70664 1.93383 1.82646 1.47175 1.77135 1.93361 1.66781 1.87546 1.54421 1.30699 1.30779 1.22168 1.32536 0.84023 1.25997 1.01451 0.93777 0.92503 1.69979 1.40613 1.17444 1.23937 0.85130 0.76084 0.78725 0.79181 1.17719 1.19697 1.15859 0.80661 0.80761 0.81592 0.73817 0.88836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -14.04 18.54 19.00 0.35 -13.69 15 2 C 0.28 7.83 14.36 88.33 1.27 9.10 15 3 C -0.08 -2.06 5.76 -21.15 -0.12 -2.18 15 4 C 0.02 0.45 9.10 22.52 0.20 0.65 15 5 C -0.22 -4.28 5.45 -19.89 -0.11 -4.39 15 6 C 0.53 9.32 3.36 71.23 0.24 9.55 15 7 F -0.18 -3.13 17.30 44.97 0.78 -2.35 15 8 F -0.18 -3.28 16.44 44.97 0.74 -2.54 15 9 F -0.18 -3.12 16.44 44.97 0.74 -2.38 15 10 C 0.01 0.21 9.38 22.30 0.21 0.42 15 11 C -0.19 -5.60 8.89 22.37 0.20 -5.40 15 12 C 0.26 8.00 6.20 38.68 0.24 8.24 15 13 N -1.06 -38.78 5.51 -50.88 -0.28 -39.06 15 14 S 2.69 132.14 4.62 -56.49 -0.26 131.87 15 15 O -1.01 -54.94 17.41 -128.00 -2.23 -57.16 15 16 O -1.03 -58.12 18.02 -128.00 -2.31 -60.42 15 17 C -1.03 -48.50 7.56 67.74 0.51 -47.99 15 18 H 0.14 5.63 6.91 -2.91 -0.02 5.60 15 19 C 0.08 3.80 5.46 84.65 0.46 4.26 15 20 N -0.89 -48.44 13.19 21.45 0.28 -48.15 15 21 Si 0.99 35.89 29.54 68.60 2.03 37.91 15 22 H -0.25 -8.75 7.11 99.48 0.71 -8.04 15 23 H -0.27 -9.64 7.11 99.48 0.71 -8.93 15 24 H -0.24 -7.58 7.11 99.48 0.71 -6.88 15 25 H 0.18 2.37 7.58 -2.91 -0.02 2.35 15 26 H 0.18 2.80 7.59 -2.91 -0.02 2.78 15 27 H 0.17 5.45 4.47 -2.91 -0.01 5.44 15 28 H 0.43 13.93 8.22 -96.75 -0.80 13.13 15 29 H 0.30 14.83 8.31 -92.71 -0.77 14.06 15 Total: -1.00 -67.62 296.94 3.43 -64.19 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.48 Total: 19.51 kcal Atomic # 6 Polarization: -30.84 SS G_CDS: 3.11 Total: -27.73 kcal Atomic # 7 Polarization: -101.25 SS G_CDS: 0.35 Total: -100.90 kcal Atomic # 8 Polarization: -113.05 SS G_CDS: -4.54 Total: -117.59 kcal Atomic # 9 Polarization: -9.53 SS G_CDS: 2.26 Total: -7.27 kcal Atomic # 14 Polarization: 35.89 SS G_CDS: 2.03 Total: 37.91 kcal Atomic # 16 Polarization: 132.14 SS G_CDS: -0.26 Total: 131.87 kcal Total: -67.62 3.43 -64.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125464653.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.552 kcal (2) G-P(sol) polarization free energy of solvation -67.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds