Wall clock time and date at job start Tue Mar 31 2020 13:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 120.00079 * 2 1 4 4 H 1.48500 * 109.46818 * 239.99509 * 3 2 1 5 5 H 1.48499 * 109.47268 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47056 * 119.99912 * 3 2 1 7 7 C 1.38805 * 119.99779 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99767 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00119 * 0.02562 * 7 2 1 10 10 C 1.80994 * 100.00106 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47171 * 179.97438 * 10 9 7 12 12 O 1.21270 * 120.00175 * 0.02562 * 11 10 9 13 13 N 1.34772 * 119.99818 * 180.02562 * 11 10 9 14 14 C 1.39005 * 120.00167 * 183.71859 * 13 11 10 15 15 C 1.46789 * 127.05474 * 26.20243 * 14 13 11 16 16 C 1.39537 * 134.07226 * 0.05884 * 15 14 13 17 17 C 1.36678 * 119.73699 * 179.97438 * 16 15 14 18 18 C 1.38788 * 120.40191 * 359.97438 * 17 16 15 19 19 C 1.37804 * 120.71933 * 0.02562 * 18 17 16 20 20 C 1.39057 * 119.86182 * 359.97438 * 19 18 17 21 21 O 1.34770 * 133.04654 * 180.02562 * 20 19 18 22 22 C 1.35193 * 111.00081 * 179.97438 * 21 20 19 23 23 C 1.46185 * 125.24656 * 180.02562 * 22 21 20 24 24 N 1.34775 * 119.99613 * 5.86152 * 23 22 21 25 25 O 1.21758 * 120.00179 * 185.85327 * 23 22 21 26 26 H 0.96999 * 120.00009 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47200 * 59.99953 * 10 9 7 28 28 H 1.09003 * 109.47495 * 299.99970 * 10 9 7 29 29 H 0.97006 * 120.00697 * 3.71635 * 13 11 10 30 30 H 1.08005 * 120.13225 * 359.95631 * 16 15 14 31 31 H 1.08002 * 119.79769 * 180.02562 * 17 16 15 32 32 H 1.08007 * 119.64162 * 179.74199 * 18 17 16 33 33 H 1.08000 * 120.06941 * 179.97438 * 19 18 17 34 34 H 0.96999 * 120.00324 * 359.97438 * 24 23 22 35 35 H 0.97006 * 119.99850 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1041 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9872 -5.3028 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8439 -6.3431 0.0018 14 6 2.3585 -7.6434 -0.0757 15 6 1.0921 -8.0804 -0.6756 16 6 0.0408 -7.4198 -1.3124 17 6 -1.0292 -8.1347 -1.7730 18 6 -1.0756 -9.5123 -1.6113 19 6 -0.0472 -10.1826 -0.9851 20 6 1.0513 -9.4756 -0.5086 21 8 2.1790 -9.8478 0.1285 22 6 2.9626 -8.7780 0.3915 23 6 4.2563 -8.8263 1.0705 24 7 4.8092 -10.0150 1.3831 25 8 4.8343 -7.7927 1.3536 26 1 -0.4850 0.8400 0.0004 27 1 3.1243 -3.7314 0.8905 28 1 3.1244 -3.7314 -0.8894 29 1 3.7994 -6.1847 0.0563 30 1 0.0724 -6.3479 -1.4407 31 1 -1.8433 -7.6245 -2.2664 32 1 -1.9290 -10.0646 -1.9763 33 1 -0.0944 -11.2549 -0.8645 34 1 4.3486 -10.8384 1.1579 35 1 5.6678 -10.0471 1.8334 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192536461.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:10 Heat of formation + Delta-G solvation = -36.855644 kcal Electronic energy + Delta-G solvation = -23484.793532 eV Core-core repulsion = 19768.791829 eV Total energy + Delta-G solvation = -3716.001703 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.066 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.63785 -39.65037 -39.43499 -37.80102 -35.25978 -33.93801 -32.47052 -32.00519 -30.40017 -29.76565 -28.78199 -25.54219 -24.59963 -22.92371 -22.27375 -20.92831 -20.12292 -18.43947 -18.37089 -17.83076 -17.39591 -16.74327 -16.47487 -15.90238 -15.38718 -15.22416 -15.01305 -14.83316 -14.63808 -14.15670 -14.08492 -13.81570 -13.42577 -13.10727 -12.64977 -12.36115 -12.25416 -12.03516 -11.48779 -11.09406 -11.05957 -10.81993 -10.79054 -10.65408 -10.09670 -9.89187 -9.78397 -9.14243 -9.09173 -8.75742 -8.34487 -7.93930 -6.57041 -6.25981 -3.97657 0.41056 1.29272 1.66438 2.29335 2.67751 2.81632 3.08081 3.20166 3.22383 3.24823 3.27858 3.52125 3.68154 4.15693 4.26023 4.56844 4.71562 4.86749 4.98675 5.09794 5.17586 5.21507 5.33083 5.53838 5.63340 5.77046 5.85405 6.05363 6.13059 6.25297 6.39267 6.40340 6.53134 6.55580 6.85962 7.04649 7.37902 7.56306 7.83988 8.25611 8.31385 9.19724 10.81419 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.016388 B = 0.003412 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.143528 B = 8203.844539 C = 9812.349527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.075 3.925 3 Si 0.920 3.080 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.538 4.538 8 H 0.074 0.926 9 S -0.054 6.054 10 C -0.153 4.153 11 C 0.530 3.470 12 O -0.485 6.485 13 N -0.641 5.641 14 C 0.193 3.807 15 C -0.148 4.148 16 C -0.020 4.020 17 C -0.155 4.155 18 C -0.069 4.069 19 C -0.133 4.133 20 C 0.089 3.911 21 O -0.183 6.183 22 C -0.112 4.112 23 C 0.614 3.386 24 N -0.843 5.843 25 O -0.529 6.529 26 H 0.270 0.730 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.424 0.576 30 H 0.158 0.842 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.407 0.593 35 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.795 -23.110 -2.193 23.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.134 4.134 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.686 4.686 8 H 0.092 0.908 9 S 0.173 5.827 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.358 6.358 13 N -0.289 5.289 14 C 0.090 3.910 15 C -0.150 4.150 16 C -0.037 4.037 17 C -0.174 4.174 18 C -0.087 4.087 19 C -0.151 4.151 20 C 0.041 3.959 21 O -0.085 6.085 22 C -0.166 4.166 23 C 0.400 3.600 24 N -0.406 5.406 25 O -0.407 6.407 26 H 0.079 0.921 27 H 0.116 0.884 28 H 0.115 0.885 29 H 0.264 0.736 30 H 0.175 0.825 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.236 0.764 35 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 2.960 -22.748 -2.012 23.028 hybrid contribution 2.560 0.946 0.195 2.737 sum 5.521 -21.802 -1.817 22.563 Atomic orbital electron populations 1.69995 1.05960 1.27685 1.46641 1.24984 0.95037 0.99045 0.94368 0.86209 0.79242 0.81095 0.78891 1.19880 1.20787 1.19865 1.22822 0.94973 0.91438 1.59340 0.90780 1.85318 1.04264 0.96340 1.96806 1.23556 1.07192 0.93831 1.05787 1.20718 0.86468 0.86255 0.74647 1.90643 1.15175 1.85113 1.44839 1.43154 1.12000 1.01947 1.71783 1.18568 0.92782 0.85177 0.94440 1.19465 0.96412 0.92951 1.06203 1.21252 0.89945 1.01965 0.90585 1.20937 0.99376 0.93938 1.03116 1.21065 0.96989 0.94602 0.96020 1.19857 0.91602 0.99924 1.03750 1.19559 0.87742 0.92553 0.96082 1.84002 1.26946 1.32684 1.64834 1.20806 0.96860 0.85129 1.13777 1.16317 0.81864 0.84310 0.77494 1.43587 1.25627 1.08125 1.63233 1.90918 1.61958 1.33252 1.54615 0.92058 0.88360 0.88470 0.73592 0.82526 0.84945 0.84691 0.84905 0.76370 0.76013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.73 13.22 55.49 0.73 -24.99 16 2 C 0.08 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.22 29.55 -169.99 -5.02 16.19 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.54 -15.06 9.50 30.94 0.29 -14.77 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.05 -1.41 20.57 -107.50 -2.21 -3.62 16 10 C -0.15 -3.05 6.16 36.01 0.22 -2.82 16 11 C 0.53 9.92 7.76 -10.98 -0.09 9.83 16 12 O -0.49 -10.20 11.12 5.57 0.06 -10.14 16 13 N -0.64 -10.14 5.11 -8.53 -0.04 -10.18 16 14 C 0.19 3.02 6.81 -81.69 -0.56 2.46 16 15 C -0.15 -2.29 5.82 -105.08 -0.61 -2.90 16 16 C -0.02 -0.31 8.64 -39.66 -0.34 -0.65 16 17 C -0.16 -1.89 9.98 -39.94 -0.40 -2.29 16 18 C -0.07 -0.68 10.01 -39.54 -0.40 -1.07 16 19 C -0.13 -1.38 10.07 -39.44 -0.40 -1.78 16 20 C 0.09 1.18 7.39 -38.40 -0.28 0.89 16 21 O -0.18 -2.27 10.29 1.90 0.02 -2.25 16 22 C -0.11 -1.52 7.07 -36.92 -0.26 -1.78 16 23 C 0.61 7.43 8.04 -13.07 -0.11 7.33 16 24 N -0.84 -6.22 8.87 30.15 0.27 -5.95 16 25 O -0.53 -7.85 16.08 5.14 0.08 -7.77 16 26 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.10 1.85 8.14 -51.92 -0.42 1.42 16 28 H 0.10 1.76 8.14 -51.91 -0.42 1.34 16 29 H 0.42 5.99 7.36 -40.82 -0.30 5.69 16 30 H 0.16 2.76 5.44 -52.48 -0.29 2.47 16 31 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 33 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.41 2.15 8.54 -40.82 -0.35 1.80 16 35 H 0.41 2.22 8.93 -40.82 -0.36 1.86 16 LS Contribution 325.73 15.07 4.91 4.91 Total: -1.00 -34.46 325.73 -7.18 -41.64 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -2.96 Total: 7.69 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -3.02 Total: -5.53 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.96 Total: -41.13 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: 0.16 Total: -20.15 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.41 SS G_CDS: -2.21 Total: -3.62 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.46 -7.18 -41.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192536461.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.782 kcal (2) G-P(sol) polarization free energy of solvation -34.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds