Wall clock time and date at job start Tue Mar 31 2020 13:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 120.00079 * 2 1 4 4 H 1.48500 * 109.46818 * 239.99509 * 3 2 1 5 5 H 1.48499 * 109.47268 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47056 * 119.99912 * 3 2 1 7 7 C 1.38805 * 119.99779 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99767 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00119 * 0.02562 * 7 2 1 10 10 C 1.80994 * 100.00106 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47171 * 179.97438 * 10 9 7 12 12 O 1.21270 * 120.00175 * 0.02562 * 11 10 9 13 13 N 1.34772 * 119.99818 * 180.02562 * 11 10 9 14 14 C 1.39005 * 120.00167 * 183.71859 * 13 11 10 15 15 C 1.46789 * 127.05474 * 26.20243 * 14 13 11 16 16 C 1.39537 * 134.07226 * 0.05884 * 15 14 13 17 17 C 1.36678 * 119.73699 * 179.97438 * 16 15 14 18 18 C 1.38788 * 120.40191 * 359.97438 * 17 16 15 19 19 C 1.37804 * 120.71933 * 0.02562 * 18 17 16 20 20 C 1.39057 * 119.86182 * 359.97438 * 19 18 17 21 21 O 1.34770 * 133.04654 * 180.02562 * 20 19 18 22 22 C 1.35193 * 111.00081 * 179.97438 * 21 20 19 23 23 C 1.46185 * 125.24656 * 180.02562 * 22 21 20 24 24 N 1.34775 * 119.99613 * 5.86152 * 23 22 21 25 25 O 1.21758 * 120.00179 * 185.85327 * 23 22 21 26 26 H 0.96999 * 120.00009 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47200 * 59.99953 * 10 9 7 28 28 H 1.09003 * 109.47495 * 299.99970 * 10 9 7 29 29 H 0.97006 * 120.00697 * 3.71635 * 13 11 10 30 30 H 1.08005 * 120.13225 * 359.95631 * 16 15 14 31 31 H 1.08002 * 119.79769 * 180.02562 * 17 16 15 32 32 H 1.08007 * 119.64162 * 179.74199 * 18 17 16 33 33 H 1.08000 * 120.06941 * 179.97438 * 19 18 17 34 34 H 0.96999 * 120.00324 * 359.97438 * 24 23 22 35 35 H 0.97006 * 119.99850 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1041 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9872 -5.3028 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8439 -6.3431 0.0018 14 6 2.3585 -7.6434 -0.0757 15 6 1.0921 -8.0804 -0.6756 16 6 0.0408 -7.4198 -1.3124 17 6 -1.0292 -8.1347 -1.7730 18 6 -1.0756 -9.5123 -1.6113 19 6 -0.0472 -10.1826 -0.9851 20 6 1.0513 -9.4756 -0.5086 21 8 2.1790 -9.8478 0.1285 22 6 2.9626 -8.7780 0.3915 23 6 4.2563 -8.8263 1.0705 24 7 4.8092 -10.0150 1.3831 25 8 4.8343 -7.7927 1.3536 26 1 -0.4850 0.8400 0.0004 27 1 3.1243 -3.7314 0.8905 28 1 3.1244 -3.7314 -0.8894 29 1 3.7994 -6.1847 0.0563 30 1 0.0724 -6.3479 -1.4407 31 1 -1.8433 -7.6245 -2.2664 32 1 -1.9290 -10.0646 -1.9763 33 1 -0.0944 -11.2549 -0.8645 34 1 4.3486 -10.8384 1.1579 35 1 5.6678 -10.0471 1.8334 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192536461.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:09 Heat of formation + Delta-G solvation = -63.038136 kcal Electronic energy + Delta-G solvation = -23485.928890 eV Core-core repulsion = 19768.791829 eV Total energy + Delta-G solvation = -3717.137061 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.066 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.66884 -41.01166 -40.44427 -38.75206 -36.54362 -34.80443 -34.60639 -33.16338 -31.40217 -30.94500 -30.09833 -27.69316 -25.58324 -23.96967 -23.44552 -21.90913 -21.36814 -19.96945 -19.38282 -19.20816 -18.48661 -17.97242 -17.52794 -17.01006 -16.89215 -16.76736 -16.41444 -16.01653 -15.73808 -15.60711 -15.23310 -15.04428 -14.65780 -14.52479 -14.26808 -13.63841 -13.31091 -13.19858 -13.00601 -12.88783 -12.67611 -12.58489 -11.85393 -11.79500 -11.73146 -11.20832 -11.14467 -10.89354 -10.36010 -10.26556 -9.72653 -9.01409 -8.69397 -8.37015 -6.15216 -0.62546 0.30236 0.64871 1.09367 1.31585 1.36565 1.43162 1.44392 1.53756 1.96646 1.99890 2.24347 2.35093 2.71129 2.97575 3.14759 3.34545 3.58083 3.71980 3.81808 4.04483 4.17084 4.22921 4.33171 4.42049 4.47671 4.63409 4.89193 5.19776 5.27064 5.33952 5.40410 5.44848 5.54726 5.70603 5.96382 6.06980 6.17772 6.26310 6.86617 7.04677 7.06009 8.71864 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.016388 B = 0.003412 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.143528 B = 8203.844539 C = 9812.349527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.018 3.982 3 Si 0.997 3.003 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.552 4.552 8 H 0.082 0.918 9 S -0.129 6.129 10 C -0.130 4.130 11 C 0.531 3.469 12 O -0.513 6.513 13 N -0.627 5.627 14 C 0.149 3.851 15 C -0.174 4.174 16 C -0.058 4.058 17 C -0.153 4.153 18 C -0.059 4.059 19 C -0.119 4.119 20 C 0.076 3.924 21 O -0.168 6.168 22 C -0.092 4.092 23 C 0.611 3.389 24 N -0.813 5.813 25 O -0.559 6.559 26 H 0.272 0.728 27 H 0.111 0.889 28 H 0.116 0.884 29 H 0.431 0.569 30 H 0.123 0.877 31 H 0.146 0.854 32 H 0.180 0.820 33 H 0.173 0.827 34 H 0.421 0.579 35 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.842 -25.590 -2.268 26.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.188 4.188 3 Si 0.818 3.182 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.700 4.700 8 H 0.100 0.900 9 S 0.098 5.902 10 C -0.281 4.281 11 C 0.320 3.680 12 O -0.388 6.388 13 N -0.276 5.276 14 C 0.047 3.953 15 C -0.176 4.176 16 C -0.076 4.076 17 C -0.171 4.171 18 C -0.077 4.077 19 C -0.137 4.137 20 C 0.027 3.973 21 O -0.069 6.069 22 C -0.146 4.146 23 C 0.396 3.604 24 N -0.377 5.377 25 O -0.440 6.440 26 H 0.081 0.919 27 H 0.130 0.870 28 H 0.134 0.866 29 H 0.272 0.728 30 H 0.140 0.860 31 H 0.163 0.837 32 H 0.197 0.803 33 H 0.191 0.809 34 H 0.253 0.747 35 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 4.043 -25.318 -2.082 25.723 hybrid contribution 2.230 1.462 0.204 2.674 sum 6.273 -23.856 -1.878 24.738 Atomic orbital electron populations 1.70152 1.07862 1.28779 1.47737 1.26077 0.95954 1.03148 0.93580 0.85030 0.77864 0.75813 0.79474 1.18660 1.20222 1.18832 1.23189 0.95454 0.92058 1.59302 0.89959 1.85417 1.09082 0.98581 1.97077 1.23354 1.04458 0.92994 1.07294 1.20413 0.86326 0.86388 0.74899 1.90663 1.16319 1.85396 1.46394 1.42743 1.11759 1.01796 1.71329 1.18860 0.94138 0.85256 0.97024 1.19687 0.96538 0.94426 1.06970 1.21084 0.92088 1.00758 0.93649 1.21225 0.98428 0.95423 1.02046 1.21540 0.98021 0.93448 0.94677 1.20420 0.89939 1.01755 1.01554 1.19967 0.88624 0.91884 0.96803 1.84006 1.26688 1.31816 1.64430 1.21069 0.96967 0.84753 1.11836 1.16272 0.81397 0.85119 0.77585 1.43378 1.25760 1.07159 1.61385 1.90908 1.62481 1.34639 1.55985 0.91875 0.87036 0.86606 0.72807 0.85976 0.83659 0.80273 0.80945 0.74728 0.74399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.39 13.22 21.65 0.29 -55.10 16 2 C 0.02 1.00 5.49 84.86 0.47 1.47 16 3 Si 1.00 43.67 29.55 68.60 2.03 45.70 16 4 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.55 -31.57 9.50 67.96 0.65 -30.92 16 8 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 9 S -0.13 -7.06 20.57 -56.49 -1.16 -8.22 16 10 C -0.13 -5.34 6.16 71.24 0.44 -4.90 16 11 C 0.53 20.90 7.76 87.66 0.68 21.58 16 12 O -0.51 -23.11 11.12 -3.00 -0.03 -23.15 16 13 N -0.63 -20.61 5.11 -299.28 -1.53 -22.14 16 14 C 0.15 4.76 6.81 39.90 0.27 5.03 16 15 C -0.17 -5.50 5.82 -20.16 -0.12 -5.62 16 16 C -0.06 -1.87 8.64 22.22 0.19 -1.68 16 17 C -0.15 -3.65 9.98 22.04 0.22 -3.43 16 18 C -0.06 -0.98 10.01 22.30 0.22 -0.76 16 19 C -0.12 -2.06 10.07 22.36 0.23 -1.84 16 20 C 0.08 1.88 7.39 23.04 0.17 2.05 16 21 O -0.17 -3.84 10.29 -16.11 -0.17 -4.01 16 22 C -0.09 -2.42 7.07 23.99 0.17 -2.25 16 23 C 0.61 13.93 8.04 86.31 0.69 14.63 16 24 N -0.81 -9.85 8.87 -176.71 -1.57 -11.42 16 25 O -0.56 -16.19 16.08 -4.53 -0.07 -16.27 16 26 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 27 H 0.11 4.26 8.14 -2.40 -0.02 4.24 16 28 H 0.12 4.27 8.14 -2.39 -0.02 4.25 16 29 H 0.43 12.48 7.36 -92.70 -0.68 11.79 16 30 H 0.12 4.78 5.44 -2.92 -0.02 4.76 16 31 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 32 H 0.18 1.41 8.06 -2.91 -0.02 1.38 16 33 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.42 3.08 8.54 -92.71 -0.79 2.28 16 35 H 0.42 3.40 8.93 -92.70 -0.83 2.57 16 Total: -1.00 -79.02 325.73 0.96 -78.06 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: -1.10 Total: 23.19 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: 4.28 Total: -6.64 kcal Atomic # 7 Polarization: -85.85 SS G_CDS: -2.81 Total: -88.66 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -0.27 Total: -43.42 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -7.06 SS G_CDS: -1.16 Total: -8.22 kcal Total: -79.02 0.96 -78.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192536461.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.019 kcal (2) G-P(sol) polarization free energy of solvation -79.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds