Wall clock time and date at job start Tue Mar 31 2020 13:36:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86807 * 119.99653 * 2 1
4 4 H 1.48503 * 109.47106 * 180.02562 * 3 2 1
5 5 H 1.48499 * 109.46826 * 300.00049 * 3 2 1
6 6 H 1.48499 * 109.46956 * 60.00342 * 3 2 1
7 7 C 1.37871 * 120.00545 * 180.02562 * 2 1 3
8 8 H 1.08001 * 120.00721 * 179.97438 * 7 2 1
9 9 C 1.50706 * 119.99703 * 359.97438 * 7 2 1
10 10 C 1.52999 * 109.46862 * 180.02562 * 9 7 2
11 11 O 1.42899 * 109.47127 * 179.97438 * 10 9 7
12 12 C 1.34937 * 117.00588 * 180.02562 * 11 10 9
13 13 O 1.21656 * 119.99472 * 359.97438 * 12 11 10
14 14 C 1.46291 * 120.00660 * 180.02562 * 12 11 10
15 15 C 1.37891 * 125.97002 * 180.02562 * 14 12 11
16 16 C 1.39783 * 106.76424 * 180.25955 * 15 14 12
17 17 C 1.36593 * 107.11898 * 359.57623 * 16 15 14
18 18 C 1.47653 * 125.65600 * 180.19234 * 17 16 15
19 19 C 1.39668 * 120.15608 * 310.02667 * 18 17 16
20 20 C 1.37913 * 119.85587 * 179.71781 * 19 18 17
21 21 C 1.38411 * 120.17964 * 0.55259 * 20 19 18
22 22 C 1.38311 * 120.32551 * 359.72165 * 21 20 19
23 23 C 1.38104 * 120.13773 * 0.02562 * 22 21 20
24 24 Cl 1.73603 * 120.09138 * 179.97438 * 23 22 21
25 25 O 1.34336 * 108.69050 * 0.43184 * 17 16 15
26 26 H 0.96994 * 120.00014 * 359.97438 * 1 2 3
27 27 H 1.09003 * 109.47122 * 60.00548 * 9 7 2
28 28 H 1.08997 * 109.47317 * 299.99899 * 9 7 2
29 29 H 1.09007 * 109.47545 * 60.00404 * 10 9 7
30 30 H 1.09001 * 109.47752 * 299.99959 * 10 9 7
31 31 H 1.08002 * 126.61162 * 359.97438 * 15 14 12
32 32 H 1.08004 * 126.43858 * 179.69529 * 16 15 14
33 33 H 1.08001 * 120.07285 * 359.97438 * 19 18 17
34 34 H 1.07996 * 119.90929 * 180.25505 * 20 19 18
35 35 H 1.08003 * 119.83647 * 179.74161 * 21 20 19
36 36 H 1.07997 * 119.93178 * 180.02562 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6179 0.0000
4 1 3.7091 1.3466 -0.0006
5 1 1.8902 2.3965 -1.2125
6 1 1.8903 2.3965 1.2125
7 6 2.0046 -1.1939 -0.0005
8 1 3.0846 -1.1940 -0.0010
9 6 1.2512 -2.4991 -0.0005
10 6 2.2455 -3.6619 -0.0005
11 8 1.5311 -4.8995 0.0001
12 6 2.2660 -6.0312 0.0007
13 8 3.4809 -5.9675 0.0002
14 6 1.6020 -7.3348 0.0008
15 6 2.2288 -8.5630 0.0019
16 6 1.2199 -9.5305 -0.0046
17 6 0.0261 -8.8666 0.0003
18 6 -1.3091 -9.4968 0.0003
19 6 -1.6139 -10.4950 -0.9278
20 6 -2.8612 -11.0835 -0.9185
21 6 -3.8143 -10.6795 0.0003
22 6 -3.5224 -9.6878 0.9191
23 6 -2.2760 -9.0931 0.9250
24 17 -1.9111 -7.8479 2.0784
25 8 0.2684 -7.5453 -0.0002
26 1 -0.4850 0.8400 0.0004
27 1 0.6242 -2.5567 -0.8904
28 1 0.6249 -2.5571 0.8896
29 1 2.8722 -3.6042 0.8895
30 1 2.8722 -3.6042 -0.8905
31 1 3.2937 -8.7427 0.0024
32 1 1.3583 -10.6016 -0.0102
33 1 -0.8731 -10.8082 -1.6486
34 1 -3.0964 -11.8583 -1.6331
35 1 -4.7906 -11.1413 -0.0001
36 1 -4.2707 -9.3778 1.6334
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000194478228.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:36:28
Heat of formation + Delta-G solvation = -58.770396 kcal
Electronic energy + Delta-G solvation = -22779.683238 eV
Core-core repulsion = 19028.394782 eV
Total energy + Delta-G solvation = -3751.288455 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 320.065 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-42.76513 -39.91498 -39.49133 -36.68124 -36.36673 -33.54578 -33.29693 -32.54865
-31.21958 -30.42099 -28.97978 -25.50032 -24.21742 -23.29689 -22.36034 -21.49408
-20.96364 -20.40138 -18.52400 -17.72220 -16.75556 -16.74041 -16.28013 -15.96499
-15.88941 -15.36767 -14.81142 -14.51399 -14.27976 -13.96194 -13.58767 -13.25120
-13.22932 -13.11129 -12.86549 -12.35443 -12.16659 -11.91994 -11.80159 -11.29595
-11.10116 -11.05401 -10.82878 -10.79016 -10.49526 -10.26329 -9.76244 -9.64811
-9.62737 -9.27930 -9.22383 -8.49068 -8.42818 -6.08686 -4.13167 0.26557
0.74284 1.00554 1.83524 2.09486 2.35950 3.01943 3.09689 3.24700
3.28786 3.36219 3.41452 4.12525 4.32193 4.40744 4.49535 4.64500
4.75681 4.85889 5.01297 5.06634 5.27809 5.30345 5.42458 5.46425
5.60489 5.71198 5.80163 5.90296 6.02865 6.07305 6.10791 6.24783
6.61749 6.71431 6.81158 7.55898 7.63542 7.86041 8.08685 8.25126
8.92514 9.51136 11.02858
Molecular weight = 320.06amu
Principal moments of inertia in cm(-1)
A = 0.017124 B = 0.002782 C = 0.002509
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1634.762202 B =10061.480022 C =11157.886070
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.889 5.889
2 C 0.060 3.940
3 Si 0.900 3.100
4 H -0.271 1.271
5 H -0.282 1.282
6 H -0.282 1.282
7 C -0.525 4.525
8 H 0.060 0.940
9 C 0.025 3.975
10 C 0.071 3.929
11 O -0.336 6.336
12 C 0.542 3.458
13 O -0.492 6.492
14 C -0.043 4.043
15 C -0.115 4.115
16 C -0.194 4.194
17 C 0.054 3.946
18 C -0.020 4.020
19 C -0.077 4.077
20 C -0.117 4.117
21 C -0.095 4.095
22 C -0.111 4.111
23 C -0.015 4.015
24 Cl -0.042 7.042
25 O -0.125 6.125
26 H 0.263 0.737
27 H 0.029 0.971
28 H 0.029 0.971
29 H 0.060 0.940
30 H 0.060 0.940
31 H 0.167 0.833
32 H 0.162 0.838
33 H 0.140 0.860
34 H 0.136 0.864
35 H 0.136 0.864
36 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.839 -27.114 -0.132 27.964
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.528 5.528
2 C -0.142 4.142
3 Si 0.727 3.273
4 H -0.196 1.196
5 H -0.208 1.208
6 H -0.208 1.208
7 C -0.563 4.563
8 H 0.079 0.921
9 C -0.012 4.012
10 C -0.002 4.002
11 O -0.252 6.252
12 C 0.386 3.614
13 O -0.383 6.383
14 C -0.094 4.094
15 C -0.135 4.135
16 C -0.213 4.213
17 C 0.001 3.999
18 C -0.021 4.021
19 C -0.096 4.096
20 C -0.135 4.135
21 C -0.113 4.113
22 C -0.130 4.130
23 C -0.042 4.042
24 Cl -0.013 7.013
25 O -0.019 6.019
26 H 0.072 0.928
27 H 0.048 0.952
28 H 0.047 0.953
29 H 0.078 0.922
30 H 0.079 0.921
31 H 0.185 0.815
32 H 0.179 0.821
33 H 0.158 0.842
34 H 0.154 0.846
35 H 0.154 0.846
36 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges -6.823 -26.538 -0.023 27.401
hybrid contribution 0.650 1.045 0.137 1.238
sum -6.173 -25.493 0.114 26.230
Atomic orbital electron populations
1.69988 1.06093 1.26868 1.49822 1.24990 0.94916 0.99399 0.94893
0.86415 0.80053 0.83153 0.77689 1.19573 1.20831 1.20833 1.21012
0.93217 0.90027 1.52091 0.92134 1.19189 0.94115 0.88880 0.99023
1.23392 0.96800 0.78868 1.01153 1.86305 1.41562 1.15253 1.82051
1.19206 0.84914 0.83386 0.73860 1.90923 1.13383 1.87199 1.46780
1.21401 0.80459 0.93718 1.13843 1.22083 1.01290 0.89378 1.00716
1.21683 0.90079 1.00897 1.08647 1.20542 0.94099 0.80940 1.04351
1.17654 0.89095 0.97939 0.97411 1.21207 0.97446 0.94455 0.96447
1.21183 0.92915 1.00218 0.99213 1.21313 0.99876 0.95936 0.94170
1.21081 0.94898 0.96806 1.00211 1.21241 0.94915 0.93894 0.94111
1.98448 1.94581 1.50815 1.57459 1.84317 1.24373 1.24549 1.68678
0.92763 0.95243 0.95270 0.92162 0.92134 0.81501 0.82073 0.84244
0.84589 0.84594 0.84205
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16
2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16
3 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16
4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16
5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
7 C -0.53 -15.03 9.11 -34.44 -0.31 -15.34 16
8 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16
9 C 0.03 0.68 5.34 -27.88 -0.15 0.53 16
10 C 0.07 1.63 5.32 37.16 0.20 1.83 16
11 O -0.34 -7.32 10.12 -42.63 -0.43 -7.75 16
12 C 0.54 10.45 7.91 33.97 0.27 10.72 16
13 O -0.49 -10.02 16.64 -19.38 -0.32 -10.34 16
14 C -0.04 -0.69 7.21 -36.47 -0.26 -0.96 16
15 C -0.12 -1.45 10.65 -39.13 -0.42 -1.87 16
16 C -0.19 -2.06 10.69 -39.60 -0.42 -2.48 16
17 C 0.05 0.67 6.01 -36.33 -0.22 0.46 16
18 C -0.02 -0.21 5.79 -104.96 -0.61 -0.82 16
19 C -0.08 -0.58 9.69 -39.17 -0.38 -0.96 16
20 C -0.12 -0.68 10.03 -39.64 -0.40 -1.08 16
21 C -0.09 -0.57 10.04 -39.49 -0.40 -0.97 16
22 C -0.11 -0.90 9.82 -39.60 -0.39 -1.29 16
23 C -0.01 -0.16 6.35 -39.07 -0.25 -0.41 16
24 Cl -0.04 -0.55 27.44 -51.86 -1.42 -1.97 16
25 O -0.13 -2.01 9.91 3.35 0.03 -1.97 16
26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
27 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16
28 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16
29 H 0.06 1.36 8.13 -51.93 -0.42 0.93 16
30 H 0.06 1.36 8.13 -51.93 -0.42 0.94 16
31 H 0.17 1.78 8.06 -52.49 -0.42 1.36 16
32 H 0.16 1.15 8.06 -52.48 -0.42 0.73 16
33 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16
34 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16
35 H 0.14 0.45 8.06 -52.48 -0.42 0.03 16
36 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16
LS Contribution 344.63 15.07 5.19 5.19
Total: -1.00 -33.06 344.63 -8.84 -41.90
By element:
Atomic # 1 Polarization: -0.89 SS G_CDS: -3.77 Total: -4.66 kcal
Atomic # 6 Polarization: -7.17 SS G_CDS: -3.83 Total: -11.01 kcal
Atomic # 7 Polarization: -26.78 SS G_CDS: 0.74 Total: -26.04 kcal
Atomic # 8 Polarization: -19.34 SS G_CDS: -0.72 Total: -20.06 kcal
Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal
Atomic # 17 Polarization: -0.55 SS G_CDS: -1.42 Total: -1.97 kcal
Total LS contribution 5.19 Total: 5.19 kcal
Total: -33.06 -8.84 -41.90 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000194478228.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -16.873 kcal
(2) G-P(sol) polarization free energy of solvation -33.060 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.933 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.897 kcal
(6) G-S(sol) free energy of system = (1) + (5) -58.770 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds