Wall clock time and date at job start Tue Mar 31 2020 13:18:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86803 * 120.00182 * 2 1
4 4 H 1.48493 * 109.47248 * 180.02562 * 3 2 1
5 5 H 1.48500 * 109.47173 * 300.00831 * 3 2 1
6 6 H 1.48506 * 109.46858 * 59.99873 * 3 2 1
7 7 C 1.37878 * 120.00085 * 180.02562 * 2 1 3
8 8 H 1.08000 * 119.99804 * 179.97438 * 7 2 1
9 9 C 1.50702 * 119.99986 * 359.97438 * 7 2 1
10 10 C 1.52997 * 109.46832 * 179.97438 * 9 7 2
11 11 O 1.45200 * 109.46749 * 179.97438 * 10 9 7
12 12 C 1.34773 * 116.99823 * 179.97438 * 11 10 9
13 13 O 1.21520 * 120.00485 * 0.02562 * 12 11 10
14 14 C 1.47340 * 119.99809 * 180.02562 * 12 11 10
15 15 C 1.39897 * 120.07063 * 0.24889 * 14 12 11
16 16 C 1.36587 * 119.93191 * 180.25851 * 15 14 12
17 17 C 1.39322 * 120.06885 * 359.48898 * 16 15 14
18 18 S 1.76198 * 119.93283 * 180.27927 * 17 16 15
19 19 C 1.81402 * 102.99915 * 180.02562 * 18 17 16
20 20 F 1.39900 * 109.47533 * 60.00075 * 19 18 17
21 21 F 1.39899 * 109.47043 * 179.97438 * 19 18 17
22 22 F 1.39895 * 109.47099 * 299.99605 * 19 18 17
23 23 C 1.39330 * 120.13634 * 0.26359 * 17 16 15
24 24 C 1.36583 * 120.07077 * 359.97438 * 23 17 16
25 25 H 0.96998 * 119.99898 * 359.97438 * 1 2 3
26 26 H 1.09003 * 109.46761 * 60.00526 * 9 7 2
27 27 H 1.08997 * 109.46846 * 300.00487 * 9 7 2
28 28 H 1.08995 * 109.47101 * 60.00453 * 10 9 7
29 29 H 1.09005 * 109.47280 * 299.99957 * 10 9 7
30 30 H 1.08004 * 120.03651 * 0.02727 * 15 14 12
31 31 H 1.08002 * 119.96975 * 179.77635 * 16 15 14
32 32 H 1.08004 * 119.96320 * 180.02562 * 23 17 16
33 33 H 1.07997 * 120.03906 * 180.02562 * 24 23 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7091 1.3464 -0.0006
5 1 1.8903 2.3965 -1.2124
6 1 1.8904 2.3964 1.2125
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 6 1.2510 -2.4992 -0.0005
10 6 2.2453 -3.6620 -0.0018
11 8 1.5193 -4.9195 -0.0012
12 6 2.2534 -6.0498 -0.0027
13 8 3.4669 -5.9862 -0.0041
14 6 1.5844 -7.3626 -0.0028
15 6 0.1875 -7.4375 -0.0065
16 6 -0.4297 -8.6560 -0.0013
17 6 0.3305 -9.8235 -0.0029
18 16 -0.4694 -11.3935 -0.0035
19 6 0.9203 -12.5594 -0.0049
20 9 1.7020 -12.3548 1.1371
21 9 0.4297 -13.8696 -0.0049
22 9 1.7008 -12.3533 -1.1475
23 6 1.7220 -9.7522 -0.0044
24 6 2.3450 -8.5368 -0.0048
25 1 -0.4850 0.8400 0.0004
26 1 0.6241 -2.5567 -0.8904
27 1 0.6247 -2.5570 0.8896
28 1 2.8726 -3.6047 0.8877
29 1 2.8713 -3.6039 -0.8923
30 1 -0.4024 -6.5328 -0.0098
31 1 -1.5081 -8.7145 -0.0005
32 1 2.3085 -10.6591 -0.0061
33 1 3.4236 -8.4822 -0.0064
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000194493559.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:18:47
Heat of formation + Delta-G solvation = -216.535365 kcal
Electronic energy + Delta-G solvation = -23003.429638 eV
Core-core repulsion = 18705.486947 eV
Total energy + Delta-G solvation = -4297.942692 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 320.048 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-51.55396 -49.15450 -49.08166 -41.68692 -40.00112 -37.70175 -35.45855 -33.09150
-32.49723 -32.06236 -27.93255 -27.32731 -25.66965 -24.01116 -23.03692 -22.11048
-20.77794 -20.14565 -19.93141 -19.24544 -18.69818 -18.24797 -17.73480 -17.56638
-16.54942 -16.26058 -15.98727 -15.96429 -15.79890 -15.47376 -15.38370 -15.23249
-15.17887 -15.13348 -14.62742 -14.41029 -14.29779 -14.29691 -13.21102 -13.17438
-13.00288 -12.63242 -12.60409 -12.48207 -12.02491 -11.91184 -11.55869 -11.52175
-11.38723 -11.37463 -10.61466 -10.39170 -9.17867 -8.27250 -6.39830 -1.25964
-0.78726 0.13171 0.21255 1.25672 1.41312 1.41781 1.54179 1.63609
1.78521 2.40000 2.44221 2.56219 2.57322 3.07552 3.44238 3.56769
3.58745 3.98052 4.10232 4.21923 4.23122 4.34441 4.67509 4.71499
4.80629 4.89231 5.10307 5.24625 5.44729 5.47371 5.48203 5.73470
6.06674 6.60717 6.73991 7.29886 8.85461
Molecular weight = 320.05amu
Principal moments of inertia in cm(-1)
A = 0.042819 B = 0.002112 C = 0.002040
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 653.762523 B =13253.631448 C =13722.297711
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.926 5.926
2 C 0.007 3.993
3 Si 0.972 3.028
4 H -0.263 1.263
5 H -0.275 1.275
6 H -0.275 1.275
7 C -0.549 4.549
8 H 0.064 0.936
9 C 0.031 3.969
10 C 0.091 3.909
11 O -0.355 6.355
12 C 0.500 3.500
13 O -0.538 6.538
14 C -0.130 4.130
15 C -0.038 4.038
16 C -0.087 4.087
17 C -0.084 4.084
18 S 0.025 5.975
19 C 0.446 3.554
20 F -0.164 7.164
21 F -0.145 7.145
22 F -0.164 7.164
23 C -0.136 4.136
24 C -0.034 4.034
25 H 0.268 0.732
26 H 0.009 0.991
27 H 0.009 0.991
28 H 0.061 0.939
29 H 0.061 0.939
30 H 0.157 0.843
31 H 0.173 0.827
32 H 0.143 0.857
33 H 0.147 0.853
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.291 -27.889 -0.016 27.983
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.565 5.565
2 C -0.192 4.192
3 Si 0.796 3.204
4 H -0.187 1.187
5 H -0.201 1.201
6 H -0.201 1.201
7 C -0.587 4.587
8 H 0.082 0.918
9 C -0.006 4.006
10 C 0.018 3.982
11 O -0.271 6.271
12 C 0.347 3.653
13 O -0.430 6.430
14 C -0.133 4.133
15 C -0.058 4.058
16 C -0.110 4.110
17 C -0.197 4.197
18 S 0.262 5.738
19 C 0.284 3.716
20 F -0.146 7.146
21 F -0.126 7.126
22 F -0.146 7.146
23 C -0.159 4.159
24 C -0.054 4.054
25 H 0.077 0.923
26 H 0.028 0.972
27 H 0.028 0.972
28 H 0.079 0.921
29 H 0.080 0.920
30 H 0.174 0.826
31 H 0.190 0.810
32 H 0.161 0.839
33 H 0.164 0.836
Dipole moment (debyes) X Y Z Total
from point charges -3.214 -28.186 -0.016 28.368
hybrid contribution 2.034 1.220 0.000 2.372
sum -1.180 -26.966 -0.017 26.992
Atomic orbital electron populations
1.70086 1.07716 1.28206 1.50445 1.25930 0.95844 1.03306 0.94137
0.85298 0.78899 0.78231 0.78009 1.18727 1.20085 1.20074 1.21398
0.93696 0.91256 1.52364 0.91779 1.18984 0.94313 0.90351 0.96933
1.23232 0.95178 0.78663 1.01175 1.86555 1.41921 1.15531 1.83115
1.21584 0.85555 0.85941 0.72234 1.90798 1.16095 1.88608 1.47467
1.19332 0.95024 0.89340 1.09626 1.21401 0.92518 0.99584 0.92341
1.20718 1.01703 0.88705 0.99860 1.22136 0.96667 0.97022 1.03837
1.86749 1.02465 0.92590 1.91996 1.23024 0.87531 0.85073 0.75964
1.93344 1.76651 1.94454 1.50180 1.93285 1.87138 1.36021 1.96191
1.93343 1.76711 1.94424 1.50140 1.21107 0.92588 0.99035 1.03193
1.20945 1.01247 0.89940 0.93235 0.92322 0.97239 0.97229 0.92061
0.92046 0.82550 0.80969 0.83930 0.83556
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -54.54 13.29 21.45 0.28 -54.26 16
2 C 0.01 0.39 5.46 84.66 0.46 0.85 16
3 Si 0.97 43.19 29.54 68.60 2.03 45.21 16
4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16
5 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16
6 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16
7 C -0.55 -30.74 9.11 25.60 0.23 -30.51 16
8 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16
9 C 0.03 1.65 5.35 29.85 0.16 1.81 16
10 C 0.09 4.00 5.41 71.98 0.39 4.39 16
11 O -0.35 -13.86 9.46 -56.84 -0.54 -14.40 16
12 C 0.50 17.48 7.88 70.22 0.55 18.04 16
13 O -0.54 -21.24 16.13 19.77 0.32 -20.93 16
14 C -0.13 -3.41 5.88 -20.08 -0.12 -3.53 16
15 C -0.04 -0.81 9.56 22.29 0.21 -0.60 16
16 C -0.09 -1.37 9.73 22.14 0.22 -1.15 16
17 C -0.08 -1.35 6.13 22.79 0.14 -1.21 16
18 S 0.03 0.31 21.96 -56.49 -1.24 -0.93 16
19 C 0.45 6.11 2.98 113.37 0.34 6.45 16
20 F -0.16 -2.46 15.62 44.97 0.70 -1.76 16
21 F -0.14 -1.96 17.36 44.97 0.78 -1.18 16
22 F -0.16 -2.46 15.61 44.97 0.70 -1.76 16
23 C -0.14 -2.48 8.62 22.15 0.19 -2.29 16
24 C -0.03 -0.76 9.54 22.29 0.21 -0.54 16
25 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16
26 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16
27 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16
28 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16
29 H 0.06 2.69 8.14 -2.38 -0.02 2.67 16
30 H 0.16 3.25 7.60 -2.91 -0.02 3.23 16
31 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16
32 H 0.14 2.25 4.53 -2.91 -0.01 2.24 16
33 H 0.15 3.22 7.64 -2.91 -0.02 3.19 16
Total: -1.00 -64.39 322.37 7.20 -57.19
By element:
Atomic # 1 Polarization: -0.06 SS G_CDS: 1.17 Total: 1.11 kcal
Atomic # 6 Polarization: -11.29 SS G_CDS: 2.99 Total: -8.30 kcal
Atomic # 7 Polarization: -54.54 SS G_CDS: 0.28 Total: -54.26 kcal
Atomic # 8 Polarization: -35.11 SS G_CDS: -0.22 Total: -35.32 kcal
Atomic # 9 Polarization: -6.88 SS G_CDS: 2.18 Total: -4.70 kcal
Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal
Atomic # 16 Polarization: 0.31 SS G_CDS: -1.24 Total: -0.93 kcal
Total: -64.39 7.20 -57.19 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000194493559.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -159.346 kcal
(2) G-P(sol) polarization free energy of solvation -64.386 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.732 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.196 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.189 kcal
(6) G-S(sol) free energy of system = (1) + (5) -216.535 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds