Wall clock time and date at job start Tue Mar 31 2020 12:38:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46502 * 1
3 3 C 1.46509 * 119.99697 * 2 1
4 4 C 1.50696 * 109.46868 * 270.00063 * 3 2 1
5 5 H 1.08000 * 120.00348 * 359.97438 * 4 3 2
6 6 C 1.37875 * 119.99658 * 180.02562 * 4 3 2
7 7 N 1.31517 * 120.00274 * 0.02562 * 6 4 3
8 8 Si 1.86808 * 120.00209 * 180.02562 * 6 4 3
9 9 H 1.48507 * 109.46562 * 359.97438 * 8 6 4
10 10 H 1.48492 * 109.47072 * 119.99655 * 8 6 4
11 11 H 1.48495 * 109.47340 * 240.00347 * 8 6 4
12 12 C 1.38694 * 120.00322 * 179.97438 * 2 1 3
13 13 C 1.40250 * 119.23157 * 4.98167 * 12 2 1
14 14 C 1.36215 * 119.87709 * 180.02562 * 13 12 2
15 15 C 1.41009 * 118.29173 * 359.97438 * 14 13 12
16 16 C 1.40353 * 121.25443 * 179.97438 * 15 14 13
17 17 C 1.36202 * 119.65866 * 179.74745 * 16 15 14
18 18 C 1.39270 * 120.86256 * 0.56483 * 17 16 15
19 19 C 1.36221 * 121.01901 * 359.42414 * 18 17 16
20 20 Br 1.89091 * 120.13184 * 180.30168 * 19 18 17
21 21 C 1.40628 * 119.73903 * 0.28491 * 19 18 17
22 22 N 1.31704 * 119.22889 * 185.00011 * 12 2 1
23 23 H 1.08997 * 109.46692 * 269.99828 * 1 2 3
24 24 H 1.08996 * 109.47231 * 30.00066 * 1 2 3
25 25 H 1.09006 * 109.46692 * 150.00289 * 1 2 3
26 26 H 1.08996 * 109.47003 * 30.00072 * 3 2 1
27 27 H 1.08996 * 109.46944 * 150.00271 * 3 2 1
28 28 H 0.97001 * 119.99981 * 180.02562 * 7 6 4
29 29 H 1.07996 * 120.05834 * 359.97438 * 13 12 2
30 30 H 1.08001 * 120.85172 * 180.02562 * 14 13 12
31 31 H 1.07999 * 120.16672 * 0.02935 * 16 15 14
32 32 H 1.08000 * 119.56951 * 180.26344 * 17 16 15
33 33 H 1.08002 * 119.49566 * 179.71156 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2688 0.0000
4 6 2.4486 1.7038 -1.4208
5 1 2.0981 1.0958 -2.2417
6 6 3.1268 2.8775 -1.6727
7 7 3.5549 3.6172 -0.6731
8 14 3.4375 3.4173 -3.4339
9 1 2.8595 2.4171 -4.3673
10 1 2.8004 4.7382 -3.6665
11 1 4.8999 3.5248 -3.6680
12 6 2.1586 -1.2011 0.0005
13 6 1.4451 -2.4039 -0.1052
14 6 2.1130 -3.5912 -0.1055
15 6 3.5188 -3.5672 0.0017
16 6 4.2689 -4.7534 0.0082
17 6 5.6259 -4.6922 0.1080
18 6 6.2798 -3.4673 0.2155
19 6 5.5829 -2.2968 0.2123
20 35 6.4970 -0.6474 0.3512
21 6 4.1809 -2.3200 0.1049
22 7 3.4717 -1.1854 0.1007
23 1 -0.3632 0.0000 1.0277
24 1 -0.3633 0.8899 -0.5138
25 1 -0.3633 -0.8901 -0.5138
26 1 1.6084 2.0284 0.5138
27 1 3.1499 1.1385 0.5138
28 1 4.0317 4.4431 -0.8504
29 1 0.3683 -2.3889 -0.1854
30 1 1.5795 -4.5267 -0.1865
31 1 3.7730 -5.7096 -0.0701
32 1 6.2020 -5.6057 0.1085
33 1 7.3564 -3.4447 0.2981
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000301743472.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:38:34
Heat of formation + Delta-G solvation = 71.123827 kcal
Electronic energy + Delta-G solvation = -18507.705219 eV
Core-core repulsion = 15579.914465 eV
Total energy + Delta-G solvation = -2927.790754 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 320.022 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-40.37473 -37.63784 -35.07670 -33.32485 -32.56626 -30.89110 -29.64251 -28.50885
-27.78268 -25.44919 -23.83133 -22.82651 -21.45400 -20.81109 -17.69938 -16.79478
-16.72289 -16.30918 -14.96131 -14.69532 -14.39524 -14.08159 -13.99578 -13.50682
-13.42651 -12.89685 -12.83520 -12.10990 -11.72989 -11.61527 -11.30839 -11.26356
-11.11524 -10.85232 -10.74086 -10.53980 -10.09686 -9.72188 -9.54283 -9.48271
-8.84982 -8.65344 -8.36597 -7.97461 -6.76709 -5.96774 -4.02731 0.71232
1.34519 2.24469 2.31977 3.29959 3.31788 3.39932 3.43336 3.75252
4.47011 4.57838 4.78044 4.88354 5.09616 5.23014 5.31043 5.34637
5.37267 5.46052 5.68230 5.79767 5.88994 6.11635 6.13441 6.23049
6.25329 6.43408 6.56699 6.67127 7.01499 7.09602 7.53108 7.83292
7.96595 8.22274 8.29108 8.84233 9.02066 9.61037 11.08732
Molecular weight = 320.02amu
Principal moments of inertia in cm(-1)
A = 0.012736 B = 0.006672 C = 0.004886
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2197.898334 B = 4195.519759 C = 5728.798908
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.093 3.907
2 N -0.580 5.580
3 C 0.249 3.751
4 C -0.520 4.520
5 H 0.054 0.946
6 C 0.065 3.935
7 N -0.892 5.892
8 Si 0.892 3.108
9 H -0.275 1.275
10 H -0.284 1.284
11 H -0.283 1.283
12 C 0.440 3.560
13 C -0.219 4.219
14 C -0.030 4.030
15 C -0.167 4.167
16 C -0.058 4.058
17 C -0.161 4.161
18 C -0.063 4.063
19 C -0.090 4.090
20 Br -0.029 7.029
21 C 0.211 3.789
22 N -0.522 5.522
23 H 0.045 0.955
24 H 0.077 0.923
25 H 0.058 0.942
26 H 0.028 0.972
27 H 0.058 0.942
28 H 0.261 0.739
29 H 0.133 0.867
30 H 0.133 0.867
31 H 0.124 0.876
32 H 0.124 0.876
33 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.687 -15.712 3.224 16.054
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.051 4.051
2 N -0.287 5.287
3 C 0.130 3.870
4 C -0.559 4.559
5 H 0.072 0.928
6 C -0.137 4.137
7 N -0.531 5.531
8 Si 0.720 3.280
9 H -0.199 1.199
10 H -0.211 1.211
11 H -0.209 1.209
12 C 0.191 3.809
13 C -0.243 4.243
14 C -0.056 4.056
15 C -0.173 4.173
16 C -0.077 4.077
17 C -0.181 4.181
18 C -0.085 4.085
19 C -0.172 4.172
20 Br 0.057 6.943
21 C 0.083 3.917
22 N -0.242 5.242
23 H 0.063 0.937
24 H 0.096 0.904
25 H 0.077 0.923
26 H 0.045 0.955
27 H 0.076 0.924
28 H 0.071 0.929
29 H 0.151 0.849
30 H 0.151 0.849
31 H 0.141 0.859
32 H 0.142 0.858
33 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges 1.434 -13.873 3.390 14.353
hybrid contribution -0.458 -0.715 -1.177 1.452
sum 0.976 -14.587 2.212 14.786
Atomic orbital electron populations
1.21669 0.80245 1.02682 1.00497 1.47190 1.04779 1.04911 1.71867
1.19412 0.92865 0.77219 0.97512 1.21409 1.36263 1.06060 0.92155
0.92754 1.24860 0.95410 0.96437 0.97002 1.69939 1.38448 1.14288
1.30428 0.86542 0.78131 0.78261 0.85093 1.19939 1.21063 1.20872
1.18599 0.88397 0.86173 0.87691 1.21488 1.01193 0.92456 1.09176
1.21086 0.92504 0.97840 0.94128 1.18528 0.94209 0.93971 1.10583
1.20909 0.94035 0.96657 0.96143 1.20569 0.94592 0.97036 1.05941
1.20767 0.99907 0.90952 0.96872 1.21429 0.92828 0.92850 1.10113
1.96739 1.73934 1.26769 1.96822 1.18182 0.92204 0.88001 0.93349
1.67907 1.05536 1.27163 1.23601 0.93665 0.90432 0.92293 0.95451
0.92440 0.92909 0.84910 0.84876 0.85850 0.85798 0.85345
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 1.49 10.26 59.85 0.61 2.10 16
2 N -0.58 -12.32 2.96 -183.03 -0.54 -12.86 16
3 C 0.25 6.45 5.21 -5.19 -0.03 6.43 16
4 C -0.52 -14.64 9.39 -34.44 -0.32 -14.96 16
5 H 0.05 1.56 7.81 -52.49 -0.41 1.15 16
6 C 0.06 1.85 5.46 -17.82 -0.10 1.76 16
7 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16
8 Si 0.89 22.16 29.54 -169.99 -5.02 17.13 16
9 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16
10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16
11 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16
12 C 0.44 9.03 7.37 -155.49 -1.15 7.88 16
13 C -0.22 -3.48 9.18 -39.55 -0.36 -3.85 16
14 C -0.03 -0.43 9.88 -39.26 -0.39 -0.81 16
15 C -0.17 -2.67 5.74 -106.78 -0.61 -3.28 16
16 C -0.06 -0.74 9.77 -39.52 -0.39 -1.12 16
17 C -0.16 -1.97 9.95 -39.93 -0.40 -2.37 16
18 C -0.06 -0.90 9.67 -39.92 -0.39 -1.29 16
19 C -0.09 -1.64 6.23 -39.41 -0.25 -1.88 16
20 Br -0.03 -0.55 33.17 -68.01 -2.26 -2.81 16
21 C 0.21 4.14 6.60 -84.83 -0.56 3.58 16
22 N -0.52 -11.68 8.35 -10.19 -0.09 -11.77 16
23 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16
24 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16
25 H 0.06 0.78 5.92 -51.93 -0.31 0.47 16
26 H 0.03 0.73 8.07 -51.93 -0.42 0.31 16
27 H 0.06 1.66 7.27 -51.93 -0.38 1.28 16
28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16
29 H 0.13 1.70 5.95 -52.49 -0.31 1.39 16
30 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16
31 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16
32 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16
33 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16
LS Contribution 305.14 15.07 4.60 4.60
Total: -1.00 -32.33 305.14 -10.38 -42.71
By element:
Atomic # 1 Polarization: 0.07 SS G_CDS: -3.50 Total: -3.43 kcal
Atomic # 6 Polarization: -3.50 SS G_CDS: -4.32 Total: -7.82 kcal
Atomic # 7 Polarization: -50.50 SS G_CDS: 0.11 Total: -50.39 kcal
Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal
Atomic # 35 Polarization: -0.55 SS G_CDS: -2.26 Total: -2.81 kcal
Total LS contribution 4.60 Total: 4.60 kcal
Total: -32.33 -10.38 -42.71 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000301743472.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 113.837 kcal
(2) G-P(sol) polarization free energy of solvation -32.329 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.508 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.384 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.713 kcal
(6) G-S(sol) free energy of system = (1) + (5) 71.124 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds