Wall clock time and date at job start Tue Mar 31 2020 12:38:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46502 * 1
3 3 C 1.46509 * 119.99697 * 2 1
4 4 C 1.50696 * 109.46868 * 270.00063 * 3 2 1
5 5 H 1.08000 * 120.00348 * 359.97438 * 4 3 2
6 6 C 1.37875 * 119.99658 * 180.02562 * 4 3 2
7 7 N 1.31517 * 120.00274 * 0.02562 * 6 4 3
8 8 Si 1.86808 * 120.00209 * 180.02562 * 6 4 3
9 9 H 1.48507 * 109.46562 * 359.97438 * 8 6 4
10 10 H 1.48492 * 109.47072 * 119.99655 * 8 6 4
11 11 H 1.48495 * 109.47340 * 240.00347 * 8 6 4
12 12 C 1.38694 * 120.00322 * 179.97438 * 2 1 3
13 13 C 1.40250 * 119.23157 * 4.98167 * 12 2 1
14 14 C 1.36215 * 119.87709 * 180.02562 * 13 12 2
15 15 C 1.41009 * 118.29173 * 359.97438 * 14 13 12
16 16 C 1.40353 * 121.25443 * 179.97438 * 15 14 13
17 17 C 1.36202 * 119.65866 * 179.74745 * 16 15 14
18 18 C 1.39270 * 120.86256 * 0.56483 * 17 16 15
19 19 C 1.36221 * 121.01901 * 359.42414 * 18 17 16
20 20 Br 1.89091 * 120.13184 * 180.30168 * 19 18 17
21 21 C 1.40628 * 119.73903 * 0.28491 * 19 18 17
22 22 N 1.31704 * 119.22889 * 185.00011 * 12 2 1
23 23 H 1.08997 * 109.46692 * 269.99828 * 1 2 3
24 24 H 1.08996 * 109.47231 * 30.00066 * 1 2 3
25 25 H 1.09006 * 109.46692 * 150.00289 * 1 2 3
26 26 H 1.08996 * 109.47003 * 30.00072 * 3 2 1
27 27 H 1.08996 * 109.46944 * 150.00271 * 3 2 1
28 28 H 0.97001 * 119.99981 * 180.02562 * 7 6 4
29 29 H 1.07996 * 120.05834 * 359.97438 * 13 12 2
30 30 H 1.08001 * 120.85172 * 180.02562 * 14 13 12
31 31 H 1.07999 * 120.16672 * 0.02935 * 16 15 14
32 32 H 1.08000 * 119.56951 * 180.26344 * 17 16 15
33 33 H 1.08002 * 119.49566 * 179.71156 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2688 0.0000
4 6 2.4486 1.7038 -1.4208
5 1 2.0981 1.0958 -2.2417
6 6 3.1268 2.8775 -1.6727
7 7 3.5549 3.6172 -0.6731
8 14 3.4375 3.4173 -3.4339
9 1 2.8595 2.4171 -4.3673
10 1 2.8004 4.7382 -3.6665
11 1 4.8999 3.5248 -3.6680
12 6 2.1586 -1.2011 0.0005
13 6 1.4451 -2.4039 -0.1052
14 6 2.1130 -3.5912 -0.1055
15 6 3.5188 -3.5672 0.0017
16 6 4.2689 -4.7534 0.0082
17 6 5.6259 -4.6922 0.1080
18 6 6.2798 -3.4673 0.2155
19 6 5.5829 -2.2968 0.2123
20 35 6.4970 -0.6474 0.3512
21 6 4.1809 -2.3200 0.1049
22 7 3.4717 -1.1854 0.1007
23 1 -0.3632 0.0000 1.0277
24 1 -0.3633 0.8899 -0.5138
25 1 -0.3633 -0.8901 -0.5138
26 1 1.6084 2.0284 0.5138
27 1 3.1499 1.1385 0.5138
28 1 4.0317 4.4431 -0.8504
29 1 0.3683 -2.3889 -0.1854
30 1 1.5795 -4.5267 -0.1865
31 1 3.7730 -5.7096 -0.0701
32 1 6.2020 -5.6057 0.1085
33 1 7.3564 -3.4447 0.2981
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000301743472.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:38:33
Heat of formation + Delta-G solvation = 52.433149 kcal
Electronic energy + Delta-G solvation = -18508.515708 eV
Core-core repulsion = 15579.914465 eV
Total energy + Delta-G solvation = -2928.601242 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 320.022 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-41.61957 -38.95743 -36.51682 -34.65419 -34.53219 -32.17383 -30.99312 -29.81198
-29.49254 -26.94696 -25.40880 -24.23834 -22.65720 -22.27653 -18.92677 -18.65285
-18.01658 -17.90081 -16.59777 -16.16488 -15.87640 -15.47971 -15.12919 -14.84543
-14.81728 -14.29665 -13.98924 -13.88049 -13.23253 -13.07966 -12.92848 -12.72843
-12.57136 -12.42656 -12.27082 -12.09333 -12.02305 -11.63648 -10.91437 -10.88298
-10.60161 -10.28207 -9.99226 -9.18189 -8.39633 -8.00380 -6.29458 -0.42246
0.12389 0.95350 1.14147 1.32336 1.35339 1.45725 2.13772 2.29216
2.43875 3.12654 3.29892 3.56666 3.85258 4.02128 4.08882 4.19639
4.32204 4.39796 4.55619 4.69564 4.69715 4.89088 4.95588 5.06804
5.11696 5.14000 5.33182 5.36112 5.52667 5.61520 5.73134 5.96937
6.11056 6.27790 6.60503 6.82952 7.37365 7.53676 8.89401
Molecular weight = 320.02amu
Principal moments of inertia in cm(-1)
A = 0.012736 B = 0.006672 C = 0.004886
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2197.898334 B = 4195.519759 C = 5728.798908
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.093 3.907
2 N -0.602 5.602
3 C 0.272 3.728
4 C -0.525 4.525
5 H 0.044 0.956
6 C 0.013 3.987
7 N -0.925 5.925
8 Si 0.955 3.045
9 H -0.270 1.270
10 H -0.270 1.270
11 H -0.284 1.284
12 C 0.413 3.587
13 C -0.228 4.228
14 C -0.011 4.011
15 C -0.178 4.178
16 C -0.044 4.044
17 C -0.153 4.153
18 C -0.051 4.051
19 C -0.129 4.129
20 Br -0.066 7.066
21 C 0.171 3.829
22 N -0.578 5.578
23 H 0.062 0.938
24 H 0.064 0.936
25 H 0.092 0.908
26 H 0.008 0.992
27 H 0.016 0.984
28 H 0.263 0.737
29 H 0.165 0.835
30 H 0.189 0.811
31 H 0.174 0.826
32 H 0.170 0.830
33 H 0.148 0.852
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.193 -19.969 2.211 20.092
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.049 4.049
2 N -0.312 5.312
3 C 0.150 3.850
4 C -0.564 4.564
5 H 0.062 0.938
6 C -0.185 4.185
7 N -0.566 5.566
8 Si 0.780 3.220
9 H -0.195 1.195
10 H -0.195 1.195
11 H -0.210 1.210
12 C 0.166 3.834
13 C -0.251 4.251
14 C -0.035 4.035
15 C -0.183 4.183
16 C -0.062 4.062
17 C -0.173 4.173
18 C -0.073 4.073
19 C -0.210 4.210
20 Br 0.020 6.980
21 C 0.044 3.956
22 N -0.299 5.299
23 H 0.081 0.919
24 H 0.083 0.917
25 H 0.111 0.889
26 H 0.026 0.974
27 H 0.034 0.966
28 H 0.072 0.928
29 H 0.182 0.818
30 H 0.207 0.793
31 H 0.191 0.809
32 H 0.187 0.813
33 H 0.166 0.834
Dipole moment (debyes) X Y Z Total
from point charges 0.552 -18.190 2.380 18.354
hybrid contribution -0.086 0.358 -0.808 0.888
sum 0.467 -17.832 1.573 17.908
Atomic orbital electron populations
1.21840 0.77471 1.03681 1.01943 1.47028 1.06357 1.03697 1.74100
1.18694 0.91328 0.79386 0.95573 1.21619 1.35941 1.05918 0.92942
0.93760 1.25686 0.95224 0.96618 1.01019 1.70059 1.39251 1.14752
1.32503 0.85558 0.77760 0.78383 0.80268 1.19458 1.19485 1.21026
1.19090 0.88545 0.87238 0.88567 1.21703 1.02612 0.91145 1.09661
1.21692 0.91702 0.99210 0.90923 1.18962 0.95649 0.93710 1.09988
1.21464 0.94153 0.97225 0.93387 1.21113 0.95066 0.97415 1.03670
1.21182 1.01034 0.90638 0.94415 1.21637 0.92885 0.92608 1.13870
1.96668 1.74301 1.29915 1.97150 1.18611 0.92789 0.89021 0.95150
1.67754 1.07167 1.29752 1.25193 0.91932 0.91688 0.88946 0.97431
0.96629 0.92764 0.81788 0.79341 0.80853 0.81273 0.83399
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 2.95 10.26 127.77 1.31 4.27 16
2 N -0.60 -26.55 2.96 -732.99 -2.17 -28.72 16
3 C 0.27 15.07 5.21 85.63 0.45 15.52 16
4 C -0.53 -31.00 9.39 25.60 0.24 -30.76 16
5 H 0.04 2.64 7.81 -2.91 -0.02 2.61 16
6 C 0.01 0.79 5.46 84.65 0.46 1.25 16
7 N -0.93 -57.52 13.29 21.45 0.28 -57.23 16
8 Si 0.95 46.70 29.54 68.60 2.03 48.73 16
9 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16
10 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16
11 H -0.28 -13.87 7.11 99.48 0.71 -13.17 16
12 C 0.41 17.25 7.37 133.65 0.99 18.23 16
13 C -0.23 -6.71 9.18 22.29 0.20 -6.50 16
14 C -0.01 -0.25 9.88 22.48 0.22 -0.03 16
15 C -0.18 -5.12 5.74 -21.26 -0.12 -5.24 16
16 C -0.04 -0.86 9.77 22.31 0.22 -0.64 16
17 C -0.15 -2.97 9.95 22.04 0.22 -2.75 16
18 C -0.05 -1.35 9.67 22.05 0.21 -1.14 16
19 C -0.13 -4.71 6.23 22.38 0.14 -4.57 16
20 Br -0.07 -2.71 33.17 -20.37 -0.68 -3.38 16
21 C 0.17 6.72 6.60 40.25 0.27 6.98 16
22 N -0.58 -27.00 8.35 -186.16 -1.55 -28.55 16
23 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16
24 H 0.06 2.17 8.07 -2.39 -0.02 2.16 16
25 H 0.09 2.25 5.92 -2.38 -0.01 2.23 16
26 H 0.01 0.44 8.07 -2.39 -0.02 0.42 16
27 H 0.02 0.98 7.27 -2.39 -0.02 0.97 16
28 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16
29 H 0.16 3.59 5.95 -2.91 -0.02 3.58 16
30 H 0.19 2.33 8.06 -2.91 -0.02 2.30 16
31 H 0.17 1.74 8.06 -2.91 -0.02 1.71 16
32 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16
33 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16
Total: -1.00 -78.15 305.14 3.84 -74.31
By element:
Atomic # 1 Polarization: -0.90 SS G_CDS: 1.13 Total: 0.23 kcal
Atomic # 6 Polarization: -10.19 SS G_CDS: 4.81 Total: -5.39 kcal
Atomic # 7 Polarization: -111.06 SS G_CDS: -3.44 Total: -114.50 kcal
Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal
Atomic # 35 Polarization: -2.71 SS G_CDS: -0.68 Total: -3.38 kcal
Total: -78.15 3.84 -74.31 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000301743472.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 126.746 kcal
(2) G-P(sol) polarization free energy of solvation -78.153 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.593 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.840 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.313 kcal
(6) G-S(sol) free energy of system = (1) + (5) 52.433 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds