Wall clock time and date at job start Tue Mar 31 2020 12:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86810 * 120.00146 * 2 1 4 4 H 1.48494 * 109.47108 * 240.00195 * 3 2 1 5 5 H 1.48503 * 109.46632 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47043 * 120.00041 * 3 2 1 7 7 C 1.38813 * 120.00290 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00062 * 196.88590 * 7 2 1 9 9 N 1.36936 * 119.99575 * 17.16731 * 7 2 1 10 10 C 1.47083 * 120.88318 * 26.57104 * 9 7 2 11 11 C 1.53690 * 108.27346 * 128.75954 * 10 9 7 12 12 N 1.46900 * 109.26152 * 54.08029 * 11 10 9 13 13 C 1.46900 * 110.99950 * 172.60364 * 12 11 10 14 14 C 1.50701 * 109.47460 * 314.30370 * 13 12 11 15 15 C 1.33369 * 122.53771 * 259.71600 * 14 13 12 16 16 S 1.75876 * 109.62914 * 179.87094 * 15 14 13 17 17 C 1.75881 * 90.99129 * 0.32661 * 16 15 14 18 18 Cl 1.73598 * 125.20570 * 179.81837 * 17 16 15 19 19 C 1.33545 * 109.58789 * 359.81673 * 17 16 15 20 20 Cl 1.73605 * 122.56573 * 180.02562 * 19 17 16 21 21 C 1.46891 * 111.26969 * 296.75956 * 12 11 10 22 22 C 1.47086 * 120.87786 * 206.85386 * 9 7 2 23 23 H 0.97001 * 119.99757 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.62320 * 248.52708 * 10 9 7 25 25 H 1.08997 * 109.62861 * 9.10408 * 10 9 7 26 26 H 1.09000 * 109.64823 * 294.07489 * 11 10 9 27 27 H 1.09005 * 109.44264 * 173.95995 * 11 10 9 28 28 H 1.08997 * 109.46672 * 74.30687 * 13 12 11 29 29 H 1.09001 * 109.46912 * 194.30455 * 13 12 11 30 30 H 1.07998 * 125.18429 * 359.97438 * 15 14 13 31 31 H 1.09002 * 109.49046 * 303.14169 * 21 12 11 32 32 H 1.08998 * 109.52013 * 183.07630 * 21 12 11 33 33 H 1.08998 * 109.62919 * 350.89226 * 22 9 7 34 34 H 1.09003 * 109.62806 * 111.28045 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0553 -1.2224 0.2711 9 7 1.3713 -2.3614 -0.3511 10 6 0.2074 -2.3399 -1.2502 11 6 0.4530 -3.3517 -2.3807 12 7 0.7625 -4.6640 -1.7976 13 6 0.8317 -5.6990 -2.8378 14 6 -0.3442 -5.5547 -3.7692 15 6 -1.4291 -6.3252 -3.6796 16 16 -2.5847 -5.8653 -4.9230 17 6 -1.4940 -4.6212 -5.5197 18 17 -1.8189 -3.5627 -6.8567 19 6 -0.3776 -4.6156 -4.7868 20 17 0.9311 -3.5149 -5.0861 21 6 2.0050 -4.6199 -1.0153 22 6 1.8270 -3.6607 0.1664 23 1 -0.4850 0.8401 -0.0004 24 1 -0.6890 -2.6165 -0.6952 25 1 0.0878 -1.3412 -1.6703 26 1 1.2904 -3.0196 -2.9943 27 1 -0.4419 -3.4300 -2.9982 28 1 1.7577 -5.5862 -3.4015 29 1 0.8075 -6.6843 -2.3721 30 1 -1.5763 -7.1107 -2.9531 31 1 2.8209 -4.2701 -1.6479 32 1 2.2361 -5.6176 -0.6422 33 1 2.7785 -3.5357 0.6831 34 1 1.0847 -4.0603 0.8574 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334569294.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:05 Heat of formation + Delta-G solvation = 70.054343 kcal Electronic energy + Delta-G solvation = -20711.336991 eV Core-core repulsion = 17438.247568 eV Total energy + Delta-G solvation = -3273.089423 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 320.021 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -39.51129 -37.44867 -36.76841 -36.20227 -34.13019 -31.40965 -29.96695 -29.71399 -27.34617 -25.08888 -23.64252 -22.43824 -21.79463 -19.39877 -19.06747 -18.06111 -16.77725 -16.10717 -15.55280 -14.62451 -14.47408 -14.37131 -13.91885 -13.81380 -13.47184 -13.36628 -12.99840 -12.86967 -12.52137 -11.95116 -11.68457 -11.43031 -11.35161 -11.21805 -11.12016 -10.95775 -10.86741 -10.66870 -10.44783 -10.04370 -9.92038 -9.67766 -9.54388 -8.77776 -8.59156 -8.44761 -7.66292 -6.60239 -5.72813 -3.14028 0.51897 0.78642 1.37802 1.84521 2.16923 2.53270 3.41284 3.47115 3.48207 4.50907 4.56795 4.74622 4.77845 5.23406 5.40771 5.45275 5.49648 5.55340 5.88399 5.93139 5.99701 6.10316 6.18695 6.31180 6.48780 6.59083 6.77029 6.96862 7.30759 7.60149 7.71467 7.75696 7.87061 8.49032 9.26533 9.90246 10.49023 11.35668 Molecular weight = 320.02amu Principal moments of inertia in cm(-1) A = 0.016705 B = 0.004529 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.701987 B = 6180.824265 C = 6985.054156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.900 3.100 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.252 4.252 8 H 0.064 0.936 9 N -0.594 5.594 10 C 0.180 3.820 11 C 0.023 3.977 12 N -0.525 5.525 13 C 0.109 3.891 14 C -0.081 4.081 15 C -0.181 4.181 16 S 0.174 5.826 17 C -0.156 4.156 18 Cl 0.002 6.998 19 C -0.023 4.023 20 Cl -0.020 7.020 21 C 0.045 3.955 22 C 0.149 3.851 23 H 0.254 0.746 24 H 0.023 0.977 25 H 0.087 0.913 26 H 0.042 0.958 27 H 0.059 0.941 28 H 0.044 0.956 29 H 0.083 0.917 30 H 0.181 0.819 31 H 0.029 0.971 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.512 -14.492 -12.121 19.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.730 3.270 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.318 5.318 10 C 0.054 3.946 11 C -0.105 4.105 12 N -0.250 5.250 13 C -0.021 4.021 14 C -0.093 4.093 15 C -0.318 4.318 16 S 0.436 5.564 17 C -0.300 4.300 18 Cl 0.031 6.969 19 C -0.065 4.065 20 Cl 0.009 6.991 21 C -0.084 4.084 22 C 0.023 3.977 23 H 0.064 0.936 24 H 0.041 0.959 25 H 0.105 0.895 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.199 0.801 31 H 0.047 0.953 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -5.360 -14.746 -12.357 19.972 hybrid contribution 2.428 1.820 -0.313 3.051 sum -2.932 -12.926 -12.670 18.336 Atomic orbital electron populations 1.70021 1.05191 1.25509 1.53992 1.25001 0.95259 0.98256 1.01079 0.86407 0.78949 0.83593 0.78070 1.21153 1.21613 1.20899 1.19135 0.92500 0.84902 1.41605 0.91779 1.44128 1.34419 1.01195 1.52036 1.20951 0.88727 0.96647 0.88291 1.23540 0.99209 0.89045 0.98751 1.62193 1.34591 1.05979 1.22229 1.20860 0.92493 0.97631 0.91146 1.18439 0.98713 0.95449 0.96714 1.25489 0.96375 1.06115 1.03833 1.84333 1.17988 1.27522 1.26580 1.25009 0.99936 1.04434 1.00660 1.98378 1.94779 1.62426 1.41354 1.19752 0.91659 0.97152 0.97933 1.98407 1.45705 1.60096 1.94896 1.22632 0.89475 0.99435 0.96893 1.20955 0.97760 0.86546 0.92469 0.93611 0.95935 0.89538 0.94005 0.92240 0.93791 0.89842 0.80129 0.95285 0.91990 0.92648 0.95720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.73 11.16 55.49 0.62 -26.11 16 2 C 0.00 0.07 4.93 -17.43 -0.09 -0.01 16 3 Si 0.90 22.07 29.59 -169.99 -5.03 17.04 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.25 -7.05 9.63 -15.06 -0.15 -7.19 16 8 H 0.06 1.75 7.88 -52.49 -0.41 1.34 16 9 N -0.59 -15.33 3.03 -171.73 -0.52 -15.85 16 10 C 0.18 4.49 5.45 -3.36 -0.02 4.47 16 11 C 0.02 0.47 3.84 -3.47 -0.01 0.46 16 12 N -0.52 -9.31 4.77 -235.48 -1.12 -10.43 16 13 C 0.11 1.52 5.28 -4.98 -0.03 1.49 16 14 C -0.08 -1.08 4.43 -106.22 -0.47 -1.55 16 15 C -0.18 -1.98 10.94 29.03 0.32 -1.66 16 16 S 0.17 1.80 23.34 -107.50 -2.51 -0.71 16 17 C -0.16 -2.01 7.09 29.09 0.21 -1.81 16 18 Cl 0.00 0.02 28.78 -51.86 -1.49 -1.47 16 19 C -0.02 -0.33 4.57 -41.12 -0.19 -0.52 16 20 Cl -0.02 -0.31 23.80 -51.86 -1.23 -1.54 16 21 C 0.05 0.80 5.58 -3.71 -0.02 0.78 16 22 C 0.15 3.20 6.69 -3.60 -0.02 3.18 16 23 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 24 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.09 2.41 6.12 -51.93 -0.32 2.09 16 26 H 0.04 0.87 5.78 -51.93 -0.30 0.57 16 27 H 0.06 1.16 4.96 -51.93 -0.26 0.91 16 28 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 29 H 0.08 0.98 8.07 -51.93 -0.42 0.56 16 30 H 0.18 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 33 H 0.06 1.14 7.95 -51.93 -0.41 0.72 16 34 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 311.57 15.07 4.70 4.70 Total: -1.00 -30.24 311.57 -10.83 -41.07 By element: Atomic # 1 Polarization: -0.58 SS G_CDS: -3.77 Total: -4.35 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -0.47 Total: -2.35 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -1.02 Total: -52.39 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.51 Total: -0.71 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -2.73 Total: -3.01 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.24 -10.83 -41.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334569294.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.127 kcal (2) G-P(sol) polarization free energy of solvation -30.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds