Wall clock time and date at job start Tue Mar 31 2020 13:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86800 * 120.00026 * 2 1 4 4 H 1.48502 * 109.47030 * 270.30016 * 3 2 1 5 5 H 1.48494 * 109.47011 * 30.30086 * 3 2 1 6 6 H 1.48501 * 109.46925 * 150.30282 * 3 2 1 7 7 C 1.40034 * 119.99837 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99877 * 342.67372 * 7 2 1 9 9 C 1.41536 * 119.99867 * 162.67513 * 7 2 1 10 10 C 1.41178 * 120.99760 * 331.62840 * 9 7 2 11 11 C 1.37587 * 119.02008 * 180.02562 * 10 9 7 12 12 N 1.32087 * 121.11287 * 359.97438 * 11 10 9 13 13 C 1.32480 * 122.22740 * 359.97438 * 12 11 10 14 14 N 1.39384 * 119.58059 * 179.97438 * 13 12 11 15 15 C 1.34773 * 120.00214 * 5.47550 * 14 13 12 16 16 O 1.21575 * 119.99928 * 4.99363 * 15 14 13 17 17 C 1.47648 * 120.00255 * 184.98933 * 15 14 13 18 18 C 1.39678 * 120.16466 * 359.72783 * 17 15 14 19 19 C 1.37957 * 119.86378 * 179.71631 * 18 17 15 20 20 Cl 1.73596 * 119.90269 * 180.27184 * 19 18 17 21 21 C 1.38562 * 120.19403 * 0.55934 * 19 18 17 22 22 C 1.38196 * 120.33253 * 359.71361 * 21 19 18 23 23 C 1.38320 * 120.13082 * 0.02562 * 22 21 19 24 24 F 1.35102 * 120.09809 * 179.97438 * 23 22 21 25 25 C 1.38627 * 120.83921 * 0.02562 * 13 12 11 26 26 H 0.96999 * 119.99953 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.49242 * 0.03823 * 10 9 7 28 28 H 1.08001 * 119.44298 * 179.97438 * 11 10 9 29 29 H 0.97005 * 119.99863 * 185.47177 * 14 13 12 30 30 H 1.08002 * 120.06146 * 359.97438 * 18 17 15 31 31 H 1.08001 * 119.84060 * 179.69411 * 21 19 18 32 32 H 1.07998 * 119.93607 * 179.97438 * 22 21 19 33 33 H 1.07992 * 120.60183 * 180.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4826 2.0501 -1.4001 5 1 1.4422 2.6508 0.7064 6 1 3.5422 1.4383 0.6936 7 6 2.0076 -1.2127 -0.0005 8 1 1.5043 -2.1270 0.2776 9 6 3.3748 -1.2404 -0.3656 10 6 3.9079 -0.2872 -1.2602 11 6 5.2427 -0.3523 -1.5875 12 7 6.0253 -1.2872 -1.0792 13 6 5.5747 -2.2037 -0.2353 14 7 6.4494 -3.1656 0.2671 15 6 7.7648 -3.0947 -0.0175 16 8 8.2026 -2.1437 -0.6357 17 6 8.6743 -4.1718 0.4214 18 6 8.1761 -5.2631 1.1368 19 6 9.0305 -6.2689 1.5388 20 17 8.4111 -7.6291 2.4218 21 6 10.3825 -6.1937 1.2450 22 6 10.8851 -5.1149 0.5425 23 6 10.0398 -4.1014 0.1282 24 9 10.5319 -3.0468 -0.5580 25 6 4.2442 -2.2189 0.1535 26 1 -0.4850 0.8400 0.0004 27 1 3.2774 0.4819 -1.6812 28 1 5.6576 0.3732 -2.2715 29 1 6.1114 -3.8861 0.8218 30 1 7.1234 -5.3213 1.3711 31 1 11.0470 -6.9819 1.5667 32 1 11.9400 -5.0626 0.3174 33 1 3.8811 -2.9675 0.8420 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335281751.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:27 Heat of formation + Delta-G solvation = -35.388183 kcal Electronic energy + Delta-G solvation = -22903.190396 eV Core-core repulsion = 19061.748316 eV Total energy + Delta-G solvation = -3841.442080 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 320.047 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.05043 -41.67265 -40.32884 -39.30849 -37.44976 -36.34084 -35.56111 -33.29577 -32.84783 -31.40558 -30.53781 -27.96024 -25.84460 -24.26790 -23.75840 -23.25347 -21.51161 -20.10100 -19.30502 -18.35463 -18.07834 -17.65232 -17.13769 -17.00570 -16.88945 -16.22037 -16.10174 -15.91272 -15.77269 -15.11417 -14.80222 -14.62794 -14.54722 -14.52083 -14.23752 -13.68900 -13.47259 -13.02883 -12.76810 -12.73808 -12.56748 -12.33620 -12.10196 -11.76533 -11.58387 -11.25024 -11.20401 -10.43868 -10.22395 -9.77490 -9.75692 -9.06481 -9.00155 -6.74511 -0.60948 -0.17980 0.53216 0.72508 0.95665 1.26707 1.39544 1.46183 1.67768 1.81464 2.08003 2.39193 2.66099 2.97213 3.22256 3.46105 3.49219 3.82452 3.87340 4.05792 4.27832 4.43206 4.50196 4.59334 4.61021 4.70934 4.73528 4.84042 4.92382 5.16052 5.21910 5.34677 5.42993 5.68788 5.98426 6.14947 6.33152 6.48259 6.66864 7.03104 7.60777 8.05419 Molecular weight = 320.05amu Principal moments of inertia in cm(-1) A = 0.019882 B = 0.003149 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.991074 B = 8888.344447 C =10107.656406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.058 3.942 3 Si 0.965 3.035 4 H -0.251 1.251 5 H -0.273 1.273 6 H -0.265 1.265 7 C -0.466 4.466 8 H 0.072 0.928 9 C 0.115 3.885 10 C -0.316 4.316 11 C 0.136 3.864 12 N -0.577 5.577 13 C 0.358 3.642 14 N -0.643 5.643 15 C 0.541 3.459 16 O -0.506 6.506 17 C -0.173 4.173 18 C -0.047 4.047 19 C -0.056 4.056 20 Cl -0.045 7.045 21 C -0.038 4.038 22 C -0.136 4.136 23 C 0.140 3.860 24 F -0.131 7.131 25 C -0.294 4.294 26 H 0.300 0.700 27 H 0.117 0.883 28 H 0.156 0.844 29 H 0.426 0.574 30 H 0.160 0.840 31 H 0.186 0.814 32 H 0.184 0.816 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.136 -13.594 5.410 23.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.160 4.160 3 Si 0.789 3.211 4 H -0.177 1.177 5 H -0.199 1.199 6 H -0.190 1.190 7 C -0.496 4.496 8 H 0.090 0.910 9 C 0.106 3.894 10 C -0.339 4.339 11 C -0.018 4.018 12 N -0.297 5.297 13 C 0.132 3.868 14 N -0.292 5.292 15 C 0.328 3.672 16 O -0.378 6.378 17 C -0.177 4.177 18 C -0.066 4.066 19 C -0.083 4.083 20 Cl -0.016 7.016 21 C -0.057 4.057 22 C -0.154 4.154 23 C 0.119 3.881 24 F -0.109 7.109 25 C -0.320 4.320 26 H 0.111 0.889 27 H 0.134 0.866 28 H 0.174 0.826 29 H 0.266 0.734 30 H 0.177 0.823 31 H 0.204 0.796 32 H 0.201 0.799 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 19.071 -12.987 4.803 23.567 hybrid contribution -1.484 0.602 0.308 1.631 sum 17.586 -12.385 5.110 22.108 Atomic orbital electron populations 1.69640 1.09023 1.32087 1.34448 1.26757 0.95290 1.04045 0.89944 0.85536 0.78844 0.76700 0.79995 1.17674 1.19933 1.18986 1.19477 0.93152 0.96082 1.40911 0.90996 1.17850 0.92767 0.90418 0.88326 1.22131 0.97605 1.06614 1.07557 1.22268 0.89696 0.94241 0.95553 1.67402 1.38724 1.07473 1.16059 1.18245 0.87291 0.89295 0.92004 1.43255 1.06358 1.28154 1.51395 1.18601 0.82197 0.86323 0.80034 1.90912 1.75651 1.33341 1.37936 1.19845 0.93017 0.97740 1.07110 1.21223 1.01457 0.90205 0.93757 1.20883 0.94519 0.91670 1.01258 1.98415 1.87439 1.42061 1.73711 1.21529 0.93180 0.97690 0.93252 1.21437 1.01927 0.92078 0.99972 1.18222 0.90925 0.85817 0.93135 1.91579 1.87623 1.55238 1.76496 1.21392 0.91664 1.08220 1.10680 0.88949 0.86557 0.82648 0.73352 0.82252 0.79634 0.79899 0.85148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.64 13.92 21.84 0.30 -42.33 16 2 C 0.06 2.96 5.44 85.29 0.46 3.43 16 3 Si 0.97 41.60 24.53 68.60 1.68 43.28 16 4 H -0.25 -10.21 6.45 99.48 0.64 -9.57 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.27 -12.15 6.99 99.48 0.70 -11.45 16 7 C -0.47 -24.79 9.64 23.52 0.23 -24.56 16 8 H 0.07 4.02 8.06 -2.91 -0.02 3.99 16 9 C 0.11 5.76 5.16 -21.12 -0.11 5.65 16 10 C -0.32 -15.15 7.37 22.84 0.17 -14.98 16 11 C 0.14 6.27 11.15 84.50 0.94 7.21 16 12 N -0.58 -27.91 7.88 -193.57 -1.53 -29.44 16 13 C 0.36 15.81 7.40 132.79 0.98 16.79 16 14 N -0.64 -22.20 5.33 -311.44 -1.66 -23.86 16 15 C 0.54 19.36 7.72 86.73 0.67 20.03 16 16 O -0.51 -22.93 13.63 -3.95 -0.05 -22.98 16 17 C -0.17 -4.40 5.88 -20.06 -0.12 -4.52 16 18 C -0.05 -0.85 9.31 22.55 0.21 -0.64 16 19 C -0.06 -0.78 6.31 22.28 0.14 -0.64 16 20 Cl -0.05 -0.58 28.95 -2.72 -0.08 -0.65 16 21 C -0.04 -0.38 9.82 22.34 0.22 -0.16 16 22 C -0.14 -1.81 10.01 22.28 0.22 -1.59 16 23 C 0.14 3.30 7.29 22.68 0.17 3.46 16 24 F -0.13 -4.01 15.55 44.97 0.70 -3.31 16 25 C -0.29 -13.29 9.73 22.99 0.22 -13.07 16 26 H 0.30 13.79 8.29 -92.71 -0.77 13.02 16 27 H 0.12 5.39 4.42 -2.91 -0.01 5.38 16 28 H 0.16 6.17 8.06 -2.91 -0.02 6.14 16 29 H 0.43 10.76 6.74 -92.70 -0.62 10.14 16 30 H 0.16 2.32 6.42 -2.91 -0.02 2.30 16 31 H 0.19 0.54 8.06 -2.91 -0.02 0.51 16 32 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 33 H 0.13 5.19 8.06 -2.91 -0.02 5.17 16 Total: -1.00 -70.46 308.73 4.28 -66.18 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.50 Total: 16.72 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 4.41 Total: -3.59 kcal Atomic # 7 Polarization: -92.75 SS G_CDS: -2.88 Total: -95.63 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.05 Total: -22.98 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.70 Total: -3.31 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 1.68 Total: 43.28 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -0.08 Total: -0.65 kcal Total: -70.46 4.28 -66.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335281751.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.790 kcal (2) G-P(sol) polarization free energy of solvation -70.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds