Wall clock time and date at job start Tue Mar 31 2020 13:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86794 * 120.00149 * 2 1 4 4 H 1.48500 * 109.47232 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47063 * 299.99414 * 3 2 1 6 6 H 1.48497 * 109.47283 * 59.99855 * 3 2 1 7 7 C 1.38955 * 119.99720 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99608 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00322 * 359.97438 * 7 2 1 10 10 C 1.34766 * 120.00270 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00193 * 359.97438 * 10 9 7 12 12 C 1.50704 * 120.00405 * 180.02562 * 10 9 7 13 13 N 1.46493 * 109.47458 * 179.97438 * 12 10 9 14 14 C 1.39962 * 120.00292 * 179.97438 * 13 12 10 15 15 C 1.38721 * 120.08033 * 0.02562 * 14 13 12 16 16 C 1.38319 * 119.96794 * 179.97438 * 15 14 13 17 17 Cl 1.73604 * 119.93139 * 179.97438 * 16 15 14 18 18 C 1.38358 * 120.13453 * 0.02562 * 16 15 14 19 19 C 1.38282 * 120.16657 * 0.27436 * 18 16 15 20 20 C 1.38493 * 120.02949 * 359.45193 * 19 18 16 21 21 O 1.36035 * 120.06790 * 180.27967 * 20 19 18 22 22 C 1.42893 * 116.99738 * 0.26319 * 21 20 19 23 23 F 1.39895 * 109.47818 * 300.00444 * 22 21 20 24 24 F 1.39904 * 109.47026 * 60.00724 * 22 21 20 25 25 H 0.96994 * 119.99535 * 0.02562 * 1 2 3 26 26 H 0.97007 * 119.99696 * 0.02562 * 9 7 2 27 27 H 1.09004 * 109.46746 * 59.99566 * 12 10 9 28 28 H 1.08994 * 109.46812 * 300.00423 * 12 10 9 29 29 H 0.97002 * 120.00260 * 0.02562 * 13 12 10 30 30 H 1.08000 * 120.01604 * 0.02562 * 15 14 13 31 31 H 1.08002 * 119.91381 * 179.97438 * 18 16 15 32 32 H 1.07994 * 119.98623 * 179.69886 * 19 18 16 33 33 H 1.09009 * 109.46787 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3963 -1.2126 6 1 1.8894 2.3964 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0016 10 6 1.9972 -3.5578 0.0026 11 8 3.2101 -3.5579 0.0022 12 6 1.2437 -4.8630 0.0032 13 7 2.1956 -5.9765 0.0037 14 6 1.7291 -7.2961 0.0049 15 6 0.3656 -7.5515 0.0050 16 6 -0.0928 -8.8565 0.0056 17 17 -1.7994 -9.1751 0.0064 18 6 0.8059 -9.9084 0.0066 19 6 2.1662 -9.6602 0.0127 20 6 2.6328 -8.3563 0.0064 21 8 3.9709 -8.1112 0.0067 22 6 4.8384 -9.2468 0.0079 23 9 4.5970 -10.0170 1.1505 24 9 4.5978 -10.0184 -1.1341 25 1 -0.4849 0.8400 -0.0004 26 1 0.3533 -2.3907 0.0016 27 1 0.6173 -4.9213 -0.8870 28 1 0.6167 -4.9201 0.8929 29 1 3.1493 -5.7993 0.0040 30 1 -0.3376 -6.7318 0.0038 31 1 0.4440 -10.9260 0.0074 32 1 2.8651 -10.4835 0.0184 33 1 5.8756 -8.9116 0.0084 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424574476.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:10 Heat of formation + Delta-G solvation = -180.956281 kcal Electronic energy + Delta-G solvation = -23837.712821 eV Core-core repulsion = 19559.189210 eV Total energy + Delta-G solvation = -4278.523611 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.053 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.28380 -48.27364 -41.31376 -40.22483 -38.70348 -37.44976 -36.41494 -35.77142 -33.37901 -31.29083 -31.07761 -28.29083 -27.01054 -26.27587 -23.59134 -23.08244 -21.24855 -20.19276 -19.93582 -19.39811 -18.85774 -18.36403 -17.50620 -17.23354 -16.79303 -16.44840 -16.30884 -15.90860 -15.69654 -15.66572 -15.04989 -15.00209 -14.90065 -14.63510 -14.16442 -14.12074 -14.10916 -13.84221 -13.57046 -13.49474 -12.94775 -12.88297 -12.45380 -12.36148 -12.24349 -12.12241 -11.86014 -11.58266 -11.12993 -10.54463 -10.09196 -9.64902 -8.51554 -8.39569 -6.01064 0.07069 0.36054 1.12396 1.34780 1.42692 1.56039 1.62096 1.91990 2.15687 2.36912 2.55066 2.55803 3.14807 3.15971 3.52054 3.69743 3.73396 3.93599 4.15483 4.15808 4.29493 4.37461 4.45776 4.57173 4.63257 5.08681 5.21138 5.38072 5.39002 5.67293 5.90932 6.20805 6.50251 6.64125 7.04868 7.45099 7.97171 8.65466 Molecular weight = 320.05amu Principal moments of inertia in cm(-1) A = 0.013944 B = 0.003176 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.492969 B = 8812.886106 C =10640.584189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.008 4.008 3 Si 0.994 3.006 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.337 4.337 8 H 0.082 0.918 9 N -0.559 5.559 10 C 0.430 3.570 11 O -0.628 6.628 12 C 0.125 3.875 13 N -0.725 5.725 14 C 0.215 3.785 15 C -0.174 4.174 16 C -0.009 4.009 17 Cl -0.062 7.062 18 C -0.136 4.136 19 C -0.132 4.132 20 C 0.020 3.980 21 O -0.334 6.334 22 C 0.409 3.591 23 F -0.207 7.207 24 F -0.207 7.207 25 H 0.280 0.720 26 H 0.400 0.600 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.410 0.590 30 H 0.150 0.850 31 H 0.156 0.844 32 H 0.150 0.850 33 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.456 -20.382 0.024 20.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.209 4.209 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.467 4.467 8 H 0.100 0.900 9 N -0.195 5.195 10 C 0.217 3.783 11 O -0.516 6.516 12 C -0.003 4.003 13 N -0.356 5.356 14 C 0.109 3.891 15 C -0.198 4.198 16 C -0.037 4.037 17 Cl -0.033 7.033 18 C -0.157 4.157 19 C -0.151 4.151 20 C -0.027 4.027 21 O -0.252 6.252 22 C 0.319 3.681 23 F -0.189 7.189 24 F -0.189 7.189 25 H 0.089 0.911 26 H 0.235 0.765 27 H 0.117 0.883 28 H 0.118 0.882 29 H 0.247 0.753 30 H 0.168 0.832 31 H 0.174 0.826 32 H 0.168 0.832 33 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 1.892 -19.927 0.023 20.016 hybrid contribution -0.014 0.697 0.001 0.697 sum 1.879 -19.229 0.025 19.321 Atomic orbital electron populations 1.69668 1.06847 1.29529 1.49394 1.26056 0.96524 1.02456 0.95822 0.84859 0.78082 0.76975 0.78368 1.19705 1.19569 1.19582 1.19728 0.92842 0.83732 1.50369 0.90009 1.41822 1.09571 1.04489 1.63603 1.20577 0.88172 0.86173 0.83348 1.90487 1.15679 1.87591 1.57883 1.20902 0.91628 0.83571 1.04156 1.44363 1.09505 1.00802 1.80972 1.17123 0.91380 0.83112 0.97438 1.20486 0.92679 0.96922 1.09751 1.20598 0.85345 0.93828 1.03896 1.98365 1.12270 1.95789 1.96865 1.20801 0.90995 0.99446 1.04449 1.21331 0.97252 0.94129 1.02391 1.18481 0.81958 0.93407 1.08899 1.86603 1.14857 1.34483 1.89277 1.24115 0.97157 0.75751 0.71044 1.93070 1.95839 1.77413 1.52553 1.93074 1.95856 1.77344 1.52605 0.91069 0.76533 0.88256 0.88250 0.75263 0.83218 0.82614 0.83223 0.75740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.60 13.05 21.67 0.28 -47.32 16 2 C -0.01 -0.40 5.50 84.93 0.47 0.07 16 3 Si 0.99 41.50 29.55 68.60 2.03 43.52 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 7 C -0.34 -18.47 9.68 84.04 0.81 -17.65 16 8 H 0.08 4.79 7.16 -2.91 -0.02 4.76 16 9 N -0.56 -27.39 5.29 -306.99 -1.62 -29.02 16 10 C 0.43 19.53 7.85 87.66 0.69 20.22 16 11 O -0.63 -33.17 15.24 -3.07 -0.05 -33.22 16 12 C 0.13 4.16 5.40 85.64 0.46 4.62 16 13 N -0.72 -23.85 5.70 -342.71 -1.95 -25.80 16 14 C 0.21 6.20 6.67 38.22 0.25 6.45 16 15 C -0.17 -4.45 9.09 22.40 0.20 -4.25 16 16 C -0.01 -0.21 6.32 22.32 0.14 -0.07 16 17 Cl -0.06 -1.28 28.95 -2.72 -0.08 -1.36 16 18 C -0.14 -2.87 9.82 22.31 0.22 -2.65 16 19 C -0.13 -3.00 8.26 22.34 0.18 -2.82 16 20 C 0.02 0.53 6.50 22.59 0.15 0.67 16 21 O -0.33 -8.31 9.68 -93.95 -0.91 -9.21 16 22 C 0.41 6.72 5.97 113.37 0.68 7.40 16 23 F -0.21 -3.85 15.57 44.97 0.70 -3.15 16 24 F -0.21 -3.85 15.60 44.97 0.70 -3.15 16 25 H 0.28 13.60 8.31 -92.71 -0.77 12.83 16 26 H 0.40 18.45 7.90 -92.70 -0.73 17.72 16 27 H 0.10 2.89 7.95 -2.38 -0.02 2.87 16 28 H 0.10 2.89 7.95 -2.39 -0.02 2.87 16 29 H 0.41 15.03 6.80 -92.71 -0.63 14.40 16 30 H 0.15 3.51 6.74 -2.91 -0.02 3.49 16 31 H 0.16 2.51 8.06 -2.91 -0.02 2.48 16 32 H 0.15 3.00 5.09 -2.91 -0.01 2.99 16 33 H 0.23 1.47 8.14 -2.38 -0.02 1.45 16 Total: -1.00 -65.14 315.12 3.21 -61.93 By element: Atomic # 1 Polarization: 34.93 SS G_CDS: -0.15 Total: 34.78 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 4.26 Total: 11.99 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -3.29 Total: -102.14 kcal Atomic # 8 Polarization: -41.48 SS G_CDS: -0.96 Total: -42.43 kcal Atomic # 9 Polarization: -7.70 SS G_CDS: 1.40 Total: -6.30 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.52 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.08 Total: -1.36 kcal Total: -65.14 3.21 -61.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424574476.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.026 kcal (2) G-P(sol) polarization free energy of solvation -65.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds