Wall clock time and date at job start Tue Mar 31 2020 13:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34783 * 119.99671 * 2 1 4 4 O 1.21619 * 120.00020 * 174.57465 * 3 2 1 5 5 C 1.47372 * 120.00093 * 354.56989 * 3 2 1 6 6 C 1.39701 * 120.21969 * 309.02742 * 5 3 2 7 7 C 1.37804 * 119.93502 * 180.02562 * 6 5 3 8 8 C 1.38664 * 120.38585 * 0.02562 * 7 6 5 9 9 C 1.37911 * 120.44300 * 359.97438 * 8 7 6 10 10 C 1.39110 * 120.05382 * 359.97438 * 9 8 7 11 11 S 1.76203 * 120.19400 * 180.02562 * 10 9 8 12 12 C 1.76203 * 99.99885 * 351.75594 * 11 10 9 13 13 H 1.08007 * 119.99573 * 5.07620 * 12 11 10 14 14 C 1.38803 * 120.00098 * 185.06859 * 12 11 10 15 15 N 1.31550 * 119.99795 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00122 * 180.02562 * 14 12 11 17 17 H 1.48490 * 109.47216 * 90.00173 * 16 14 12 18 18 H 1.48501 * 109.47072 * 210.00563 * 16 14 12 19 19 H 1.48505 * 109.46980 * 330.00000 * 16 14 12 20 20 C 1.38883 * 120.00328 * 180.02562 * 2 1 3 21 21 N 1.29649 * 124.94259 * 179.70031 * 20 2 1 22 22 C 1.32001 * 116.90406 * 179.77122 * 21 20 2 23 23 C 1.33444 * 114.57089 * 0.51300 * 22 21 20 24 24 S 1.70965 * 124.94443 * 359.97438 * 20 2 1 25 25 H 1.09003 * 109.46571 * 94.55825 * 1 2 3 26 26 H 1.08997 * 109.47330 * 214.55246 * 1 2 3 27 27 H 1.08999 * 109.47320 * 334.55627 * 1 2 3 28 28 H 1.07999 * 120.03342 * 359.97438 * 6 5 3 29 29 H 1.07999 * 119.80408 * 180.02562 * 7 6 5 30 30 H 1.07997 * 119.78003 * 180.27266 * 8 7 6 31 31 H 1.07997 * 119.97648 * 180.02562 * 9 8 7 32 32 H 0.97003 * 119.99811 * 180.02562 * 15 14 12 33 33 H 1.08006 * 122.71097 * 180.21119 * 22 21 20 34 34 H 1.07994 * 125.96033 * 179.71359 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3510 1.1697 0.0996 5 6 1.4069 2.4407 -0.1208 6 6 0.4777 2.6229 -1.1479 7 6 -0.2030 3.8162 -1.2557 8 6 0.0287 4.8402 -0.3498 9 6 0.9424 4.6773 0.6702 10 6 1.6391 3.4799 0.7968 11 16 2.8070 3.2675 2.0991 12 6 2.8569 4.9096 2.7360 13 1 2.1883 5.6616 2.3436 14 6 3.7554 5.2368 3.7422 15 7 4.5699 4.3209 4.2199 16 14 3.8078 6.9775 4.4180 17 1 2.8676 7.0931 5.5615 18 1 5.1855 7.2892 4.8763 19 1 3.4122 7.9340 3.3531 20 6 2.1595 -1.2027 -0.0005 21 7 3.4511 -1.3144 -0.0061 22 6 3.9449 -2.5385 -0.0010 23 6 3.0270 -3.5071 -0.0015 24 16 1.4355 -2.7515 -0.0006 25 1 -0.3632 -0.0817 -1.0245 26 1 -0.3634 -0.8464 0.5828 27 1 -0.3634 0.9280 0.4415 28 1 0.2937 1.8297 -1.8574 29 1 -0.9212 3.9547 -2.0503 30 1 -0.5135 5.7697 -0.4408 31 1 1.1167 5.4796 1.3718 32 1 5.1976 4.5494 4.9233 33 1 5.0060 -2.7399 -0.0016 34 1 3.2252 -4.5687 -0.0022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734815954.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:38 Heat of formation + Delta-G solvation = 64.849487 kcal Electronic energy + Delta-G solvation = -21408.908770 eV Core-core repulsion = 18140.070204 eV Total energy + Delta-G solvation = -3268.838566 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 320.039 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.48783 -38.96305 -37.55425 -35.57547 -32.82417 -31.10741 -30.46194 -29.50548 -26.95474 -25.92862 -25.48219 -23.08274 -22.14168 -21.23624 -19.27372 -18.27036 -17.89125 -16.76287 -16.29445 -16.02331 -15.87875 -15.19098 -14.93922 -14.45634 -14.39812 -13.75501 -13.55294 -13.25084 -13.16028 -13.00504 -12.90123 -12.62788 -12.15992 -11.74924 -11.42755 -11.26935 -11.23634 -11.06282 -10.39408 -10.30994 -9.99416 -9.87616 -9.63139 -9.22980 -9.11441 -8.84386 -8.54982 -8.42006 -8.02601 -6.63644 -6.53302 -4.25858 0.82976 1.06946 1.55130 1.73277 1.90055 2.75450 2.91069 3.03026 3.09875 3.16691 3.30475 3.34563 3.97024 4.22972 4.53175 4.88858 4.90199 5.03815 5.05569 5.18317 5.27600 5.34992 5.49799 5.55088 5.59056 5.77070 6.02413 6.02952 6.23673 6.38790 6.50569 6.76526 6.86220 7.02109 7.16764 7.36503 7.49107 7.99399 8.09225 8.42117 8.92826 10.52297 Molecular weight = 320.04amu Principal moments of inertia in cm(-1) A = 0.015479 B = 0.004302 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.510435 B = 6506.988908 C = 7948.670366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.528 5.528 3 C 0.560 3.440 4 O -0.439 6.439 5 C -0.165 4.165 6 C -0.065 4.065 7 C -0.178 4.178 8 C -0.076 4.076 9 C -0.150 4.150 10 C -0.047 4.047 11 S 0.107 5.893 12 C -0.569 4.569 13 H 0.095 0.905 14 C 0.081 3.919 15 N -0.857 5.857 16 Si 0.925 3.075 17 H -0.273 1.273 18 H -0.279 1.279 19 H -0.267 1.267 20 C 0.291 3.709 21 N -0.483 5.483 22 C 0.077 3.923 23 C -0.293 4.293 24 S 0.099 5.901 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.102 0.898 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.141 0.859 32 H 0.276 0.724 33 H 0.177 0.823 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.761 -10.866 -8.832 17.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.259 5.259 3 C 0.346 3.654 4 O -0.305 6.305 5 C -0.179 4.179 6 C -0.085 4.085 7 C -0.203 4.203 8 C -0.097 4.097 9 C -0.175 4.175 10 C -0.166 4.166 11 S 0.369 5.631 12 C -0.716 4.716 13 H 0.113 0.887 14 C -0.131 4.131 15 N -0.489 5.489 16 Si 0.750 3.250 17 H -0.198 1.198 18 H -0.204 1.204 19 H -0.191 1.191 20 C -0.076 4.076 21 N -0.204 5.204 22 C -0.074 4.074 23 C -0.433 4.433 24 S 0.347 5.653 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.120 0.880 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.158 0.842 32 H 0.086 0.914 33 H 0.194 0.806 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -9.751 -11.639 -7.952 17.140 hybrid contribution 0.236 1.887 0.007 1.902 sum -9.515 -9.752 -7.945 15.772 Atomic orbital electron populations 1.22187 0.76709 1.05211 1.03108 1.45350 1.07474 1.02091 1.71017 1.18705 0.87625 0.82545 0.76508 1.90938 1.12875 1.85359 1.41334 1.18913 1.04171 0.93672 1.01193 1.20907 0.93983 0.97524 0.96059 1.20662 1.03649 0.94332 1.01643 1.21113 0.96544 0.97995 0.94086 1.21418 0.97960 0.97833 1.00317 1.22887 0.99790 0.94666 0.99219 1.84093 1.40900 1.14599 1.23469 1.23539 1.25901 0.96699 1.25416 0.88693 1.25135 0.93595 0.99172 0.95179 1.69978 1.19467 1.33919 1.25557 0.86048 0.78007 0.81645 0.79289 1.19814 1.20378 1.19106 1.23888 0.91199 0.91513 1.01039 1.66621 1.08648 1.24549 1.20632 1.21709 1.01495 0.85191 0.99032 1.26715 0.93364 1.04562 1.18656 1.83689 1.10649 0.98190 1.72749 0.90995 0.90672 0.87960 0.86713 0.86726 0.86753 0.84201 0.91422 0.80643 0.80655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.79 8.79 59.85 0.53 1.32 16 2 N -0.53 -8.71 3.07 -126.05 -0.39 -9.09 16 3 C 0.56 11.48 6.57 -12.54 -0.08 11.40 16 4 O -0.44 -10.91 14.49 5.26 0.08 -10.84 16 5 C -0.16 -3.20 4.61 -104.76 -0.48 -3.68 16 6 C -0.06 -0.99 8.01 -39.19 -0.31 -1.31 16 7 C -0.18 -2.56 10.02 -39.58 -0.40 -2.95 16 8 C -0.08 -1.21 10.03 -39.54 -0.40 -1.61 16 9 C -0.15 -2.98 9.25 -39.38 -0.36 -3.35 16 10 C -0.05 -1.04 6.13 -38.38 -0.24 -1.27 16 11 S 0.11 2.86 19.79 -107.50 -2.13 0.73 16 12 C -0.57 -15.46 9.08 30.94 0.28 -15.18 16 13 H 0.10 2.42 4.86 -52.48 -0.26 2.16 16 14 C 0.08 2.19 5.49 -17.46 -0.10 2.09 16 15 N -0.86 -24.70 13.22 55.49 0.73 -23.97 16 16 Si 0.93 20.45 29.55 -169.99 -5.02 15.43 16 17 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 20 C 0.29 4.79 7.67 -87.45 -0.67 4.12 16 21 N -0.48 -8.97 8.66 -15.14 -0.13 -9.10 16 22 C 0.08 1.09 11.34 -19.16 -0.22 0.87 16 23 C -0.29 -3.30 11.35 29.06 0.33 -2.97 16 24 S 0.10 1.14 21.79 -107.50 -2.34 -1.20 16 25 H 0.07 0.62 7.63 -51.93 -0.40 0.22 16 26 H 0.07 0.69 7.24 -51.93 -0.38 0.32 16 27 H 0.10 1.20 6.33 -51.93 -0.33 0.87 16 28 H 0.11 1.43 7.17 -52.49 -0.38 1.05 16 29 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 30 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.14 2.90 4.99 -52.49 -0.26 2.64 16 32 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.18 2.03 8.06 -52.48 -0.42 1.61 16 34 H 0.18 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 318.97 15.07 4.81 4.81 Total: -1.00 -34.16 318.97 -9.33 -43.50 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -2.82 Total: 2.26 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -2.12 Total: -12.52 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.22 Total: -42.16 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.08 Total: -10.84 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 4.00 SS G_CDS: -4.47 Total: -0.47 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.16 -9.33 -43.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734815954.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.346 kcal (2) G-P(sol) polarization free energy of solvation -34.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds