Wall clock time and date at job start Tue Mar 31 2020 12:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86803 * 120.00009 * 2 1 4 4 H 1.48505 * 109.47188 * 274.64189 * 3 2 1 5 5 H 1.48502 * 109.46821 * 34.63596 * 3 2 1 6 6 H 1.48496 * 109.47467 * 154.63908 * 3 2 1 7 7 C 1.39941 * 120.00405 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99667 * 342.47851 * 7 2 1 9 9 C 1.41441 * 119.99981 * 162.47367 * 7 2 1 10 10 C 1.40792 * 120.17556 * 332.99920 * 9 7 2 11 11 C 1.37716 * 120.04887 * 180.02562 * 10 9 7 12 12 C 1.38355 * 120.41997 * 359.73718 * 11 10 9 13 13 C 1.39928 * 120.35353 * 0.52330 * 12 11 10 14 14 C 1.47755 * 120.03415 * 179.76480 * 13 12 11 15 15 O 1.21480 * 120.00239 * 179.71930 * 14 13 12 16 16 O 1.34703 * 120.00038 * 359.71745 * 14 13 12 17 17 C 1.35951 * 117.00399 * 185.78037 * 16 14 13 18 18 C 1.38673 * 120.05785 * 264.99625 * 17 16 14 19 19 C 1.38269 * 119.96023 * 179.97438 * 18 17 16 20 20 Cl 1.73601 * 119.96572 * 179.97438 * 19 18 17 21 21 C 1.38380 * 120.07183 * 0.02562 * 19 18 17 22 22 C 1.38243 * 120.11432 * 359.71945 * 21 19 18 23 23 C 1.38338 * 120.04508 * 0.55990 * 22 21 19 24 24 F 1.35097 * 120.03843 * 179.72403 * 23 22 21 25 25 C 1.39092 * 119.93555 * 359.48098 * 13 12 11 26 26 H 0.97000 * 120.00228 * 359.97438 * 1 2 3 27 27 H 1.08000 * 119.97380 * 359.97438 * 10 9 7 28 28 H 1.07998 * 119.78964 * 180.02562 * 11 10 9 29 29 H 1.08009 * 119.82517 * 180.27984 * 12 11 10 30 30 H 1.08000 * 120.01857 * 359.95523 * 18 17 16 31 31 H 1.07995 * 119.94618 * 180.02562 * 21 19 18 32 32 H 1.08005 * 119.98087 * 180.30646 * 22 21 19 33 33 H 1.08006 * 120.20743 * 180.23689 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3917 2.1031 -1.3955 5 1 1.4921 2.6224 0.7958 6 1 3.5854 1.4140 0.5996 7 6 2.0080 -1.2119 -0.0005 8 1 1.5057 -2.1256 0.2806 9 6 3.3732 -1.2400 -0.3694 10 6 3.8903 -0.2652 -1.2438 11 6 5.2198 -0.2954 -1.6016 12 6 6.0574 -1.2771 -1.1028 13 6 5.5605 -2.2576 -0.2369 14 6 6.4602 -3.3058 0.2875 15 8 6.0294 -4.1537 1.0432 16 8 7.7582 -3.3211 -0.0723 17 6 8.5026 -4.3785 0.3473 18 6 9.2505 -4.2832 1.5112 19 6 10.0064 -5.3600 1.9363 20 17 10.9432 -5.2406 3.3930 21 6 10.0179 -6.5325 1.2014 22 6 9.2694 -6.6326 0.0435 23 6 8.5159 -5.5563 -0.3894 24 9 7.7888 -5.6524 -1.5240 25 6 4.2201 -2.2411 0.1342 26 1 -0.4850 0.8400 0.0004 27 1 3.2436 0.5064 -1.6348 28 1 5.6121 0.4548 -2.2723 29 1 7.0996 -1.2890 -1.3863 30 1 9.2427 -3.3683 2.0850 31 1 10.6088 -7.3724 1.5356 32 1 9.2760 -7.5504 -0.5258 33 1 3.8328 -2.9936 0.8053 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000735454912.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:17 Heat of formation + Delta-G solvation = -81.702018 kcal Electronic energy + Delta-G solvation = -22945.114828 eV Core-core repulsion = 19069.371678 eV Total energy + Delta-G solvation = -3875.743150 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 320.040 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.14520 -41.09361 -39.04864 -37.84208 -36.84684 -36.35021 -33.82273 -31.39096 -30.88276 -30.33465 -29.96043 -25.59434 -24.62657 -23.41818 -22.63776 -20.91087 -20.69882 -18.49620 -18.06998 -17.54581 -17.40004 -16.49723 -16.05804 -15.87155 -15.43124 -15.18571 -14.75496 -14.56014 -13.98412 -13.84393 -13.76610 -13.49518 -13.04404 -12.91414 -12.81653 -12.32014 -12.09496 -11.74487 -11.55159 -11.34524 -11.22266 -11.02039 -10.91169 -10.71179 -10.34197 -10.03561 -9.76669 -9.43144 -9.31258 -8.86277 -8.07687 -7.92207 -7.10812 -4.66133 0.47363 0.62923 1.48023 1.67745 2.41424 2.63461 2.96875 3.07514 3.12166 3.21250 3.24450 3.78212 3.83703 4.25396 4.32915 4.51764 4.67612 4.83708 5.19233 5.21693 5.43811 5.54979 5.60420 5.68367 5.80373 6.03719 6.05903 6.27209 6.49449 6.51869 6.61075 6.82170 7.06324 7.27718 7.36994 7.60300 7.76624 8.07598 8.15970 8.38508 8.58888 9.90835 Molecular weight = 320.04amu Principal moments of inertia in cm(-1) A = 0.022953 B = 0.002961 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.609410 B = 9453.689545 C = 9798.999367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.082 3.918 3 Si 0.913 3.087 4 H -0.268 1.268 5 H -0.289 1.289 6 H -0.242 1.242 7 C -0.437 4.437 8 H 0.095 0.905 9 C 0.079 3.921 10 C -0.215 4.215 11 C -0.085 4.085 12 C -0.195 4.195 13 C -0.093 4.093 14 C 0.512 3.488 15 O -0.497 6.497 16 O -0.284 6.284 17 C 0.076 3.924 18 C -0.084 4.084 19 C -0.035 4.035 20 Cl -0.055 7.055 21 C -0.082 4.082 22 C -0.130 4.130 23 C 0.103 3.897 24 F -0.121 7.121 25 C -0.133 4.133 26 H 0.288 0.712 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.152 0.848 31 H 0.149 0.851 32 H 0.154 0.846 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.312 -7.607 1.404 19.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.138 4.138 3 Si 0.739 3.261 4 H -0.194 1.194 5 H -0.216 1.216 6 H -0.165 1.165 7 C -0.465 4.465 8 H 0.113 0.887 9 C 0.076 3.924 10 C -0.234 4.234 11 C -0.103 4.103 12 C -0.214 4.214 13 C -0.094 4.094 14 C 0.360 3.640 15 O -0.383 6.383 16 O -0.200 6.200 17 C 0.032 3.968 18 C -0.103 4.103 19 C -0.062 4.062 20 Cl -0.026 7.026 21 C -0.101 4.101 22 C -0.149 4.149 23 C 0.083 3.917 24 F -0.100 7.100 25 C -0.152 4.152 26 H 0.099 0.901 27 H 0.124 0.876 28 H 0.123 0.877 29 H 0.128 0.872 30 H 0.170 0.830 31 H 0.166 0.834 32 H 0.171 0.829 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 17.924 -7.774 1.770 19.617 hybrid contribution 0.144 0.691 -0.097 0.713 sum 18.068 -7.083 1.673 19.478 Atomic orbital electron populations 1.69670 1.08116 1.30637 1.33721 1.26206 0.94834 1.01887 0.90897 0.86302 0.81304 0.79528 0.78924 1.19442 1.21627 1.16529 1.19537 0.92476 0.96362 1.38097 0.88690 1.17618 0.93174 0.91020 0.90581 1.21262 0.95729 1.03109 1.03296 1.20563 0.93613 0.97363 0.98743 1.20597 0.99021 0.98009 1.03819 1.18624 0.92337 0.95428 1.03016 1.22371 0.79073 0.84844 0.77725 1.90812 1.74927 1.38912 1.33679 1.84806 1.23061 1.41543 1.70600 1.18347 0.96583 0.87185 0.94661 1.21062 0.95742 0.99396 0.94085 1.20641 0.98728 0.95530 0.91320 1.98389 1.71163 1.98278 1.34797 1.20955 0.98718 0.96901 0.93489 1.21026 0.97668 0.98374 0.97844 1.18042 0.94594 0.93916 0.85132 1.91568 1.75041 1.96406 1.46944 1.21236 0.90377 1.01788 1.01811 0.90090 0.87579 0.87734 0.87167 0.83030 0.83350 0.82873 0.86380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.45 13.93 55.55 0.77 -19.68 16 2 C 0.08 2.06 5.43 -17.34 -0.09 1.96 16 3 Si 0.91 19.70 24.42 -169.99 -4.15 15.55 16 4 H -0.27 -5.54 6.65 56.52 0.38 -5.17 16 5 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.24 -5.32 6.76 56.52 0.38 -4.94 16 7 C -0.44 -11.39 9.59 -37.73 -0.36 -11.75 16 8 H 0.10 2.60 8.06 -52.49 -0.42 2.17 16 9 C 0.08 1.94 5.18 -106.87 -0.55 1.38 16 10 C -0.21 -4.88 7.11 -38.81 -0.28 -5.15 16 11 C -0.08 -1.71 10.01 -39.73 -0.40 -2.11 16 12 C -0.19 -3.89 9.62 -38.91 -0.37 -4.27 16 13 C -0.09 -2.00 5.87 -105.06 -0.62 -2.62 16 14 C 0.51 10.34 7.83 34.62 0.27 10.61 16 15 O -0.50 -10.84 16.12 -19.25 -0.31 -11.15 16 16 O -0.28 -4.99 9.12 -24.85 -0.23 -5.21 16 17 C 0.08 1.14 4.94 -39.17 -0.19 0.95 16 18 C -0.08 -1.06 9.77 -39.41 -0.38 -1.44 16 19 C -0.04 -0.37 6.32 -39.52 -0.25 -0.62 16 20 Cl -0.06 -0.52 28.95 -51.86 -1.50 -2.02 16 21 C -0.08 -0.73 9.82 -39.53 -0.39 -1.11 16 22 C -0.13 -1.29 10.02 -39.54 -0.40 -1.69 16 23 C 0.10 1.43 7.31 -39.29 -0.29 1.14 16 24 F -0.12 -1.88 17.11 2.25 0.04 -1.84 16 25 C -0.13 -3.10 9.34 -38.42 -0.36 -3.46 16 26 H 0.29 6.65 8.30 -40.82 -0.34 6.31 16 27 H 0.11 2.37 4.26 -52.49 -0.22 2.15 16 28 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 29 H 0.11 1.94 7.59 -52.48 -0.40 1.54 16 30 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 33 H 0.12 2.76 7.64 -52.48 -0.40 2.36 16 LS Contribution 316.39 15.07 4.77 4.77 Total: -1.00 -27.60 316.39 -7.59 -35.19 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -2.32 Total: 2.57 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -4.66 Total: -18.18 kcal Atomic # 7 Polarization: -20.45 SS G_CDS: 0.77 Total: -19.68 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.54 Total: -16.36 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.15 Total: 15.55 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.50 Total: -2.02 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.60 -7.59 -35.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735454912.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.514 kcal (2) G-P(sol) polarization free energy of solvation -27.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds