Wall clock time and date at job start Tue Mar 31 2020 12:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86803 * 120.00009 * 2 1 4 4 H 1.48505 * 109.47188 * 274.64189 * 3 2 1 5 5 H 1.48502 * 109.46821 * 34.63596 * 3 2 1 6 6 H 1.48496 * 109.47467 * 154.63908 * 3 2 1 7 7 C 1.39941 * 120.00405 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99667 * 342.47851 * 7 2 1 9 9 C 1.41441 * 119.99981 * 162.47367 * 7 2 1 10 10 C 1.40792 * 120.17556 * 332.99920 * 9 7 2 11 11 C 1.37716 * 120.04887 * 180.02562 * 10 9 7 12 12 C 1.38355 * 120.41997 * 359.73718 * 11 10 9 13 13 C 1.39928 * 120.35353 * 0.52330 * 12 11 10 14 14 C 1.47755 * 120.03415 * 179.76480 * 13 12 11 15 15 O 1.21480 * 120.00239 * 179.71930 * 14 13 12 16 16 O 1.34703 * 120.00038 * 359.71745 * 14 13 12 17 17 C 1.35951 * 117.00399 * 185.78037 * 16 14 13 18 18 C 1.38673 * 120.05785 * 264.99625 * 17 16 14 19 19 C 1.38269 * 119.96023 * 179.97438 * 18 17 16 20 20 Cl 1.73601 * 119.96572 * 179.97438 * 19 18 17 21 21 C 1.38380 * 120.07183 * 0.02562 * 19 18 17 22 22 C 1.38243 * 120.11432 * 359.71945 * 21 19 18 23 23 C 1.38338 * 120.04508 * 0.55990 * 22 21 19 24 24 F 1.35097 * 120.03843 * 179.72403 * 23 22 21 25 25 C 1.39092 * 119.93555 * 359.48098 * 13 12 11 26 26 H 0.97000 * 120.00228 * 359.97438 * 1 2 3 27 27 H 1.08000 * 119.97380 * 359.97438 * 10 9 7 28 28 H 1.07998 * 119.78964 * 180.02562 * 11 10 9 29 29 H 1.08009 * 119.82517 * 180.27984 * 12 11 10 30 30 H 1.08000 * 120.01857 * 359.95523 * 18 17 16 31 31 H 1.07995 * 119.94618 * 180.02562 * 21 19 18 32 32 H 1.08005 * 119.98087 * 180.30646 * 22 21 19 33 33 H 1.08006 * 120.20743 * 180.23689 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3917 2.1031 -1.3955 5 1 1.4921 2.6224 0.7958 6 1 3.5854 1.4140 0.5996 7 6 2.0080 -1.2119 -0.0005 8 1 1.5057 -2.1256 0.2806 9 6 3.3732 -1.2400 -0.3694 10 6 3.8903 -0.2652 -1.2438 11 6 5.2198 -0.2954 -1.6016 12 6 6.0574 -1.2771 -1.1028 13 6 5.5605 -2.2576 -0.2369 14 6 6.4602 -3.3058 0.2875 15 8 6.0294 -4.1537 1.0432 16 8 7.7582 -3.3211 -0.0723 17 6 8.5026 -4.3785 0.3473 18 6 9.2505 -4.2832 1.5112 19 6 10.0064 -5.3600 1.9363 20 17 10.9432 -5.2406 3.3930 21 6 10.0179 -6.5325 1.2014 22 6 9.2694 -6.6326 0.0435 23 6 8.5159 -5.5563 -0.3894 24 9 7.7888 -5.6524 -1.5240 25 6 4.2201 -2.2411 0.1342 26 1 -0.4850 0.8400 0.0004 27 1 3.2436 0.5064 -1.6348 28 1 5.6121 0.4548 -2.2723 29 1 7.0996 -1.2890 -1.3863 30 1 9.2427 -3.3683 2.0850 31 1 10.6088 -7.3724 1.5356 32 1 9.2760 -7.5504 -0.5258 33 1 3.8328 -2.9936 0.8053 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735454912.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:16 Heat of formation + Delta-G solvation = -94.707431 kcal Electronic energy + Delta-G solvation = -22945.678785 eV Core-core repulsion = 19069.371678 eV Total energy + Delta-G solvation = -3876.307107 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 320.040 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.23517 -42.45253 -40.22297 -39.40153 -38.10566 -37.39692 -35.65916 -32.88409 -32.12196 -31.89199 -31.08162 -27.37405 -26.12096 -24.39302 -23.87569 -22.59810 -22.22396 -20.01850 -19.47777 -18.64540 -18.46046 -18.18630 -17.55879 -16.89269 -16.75860 -16.58632 -16.50093 -15.71104 -15.52207 -15.21063 -14.81452 -14.64202 -14.58086 -14.33123 -14.03234 -13.89059 -13.46558 -13.25529 -12.97389 -12.78794 -12.45939 -12.38982 -12.20638 -12.13140 -11.92382 -11.76142 -11.56556 -11.09842 -10.33514 -9.81207 -9.80415 -9.73120 -8.96392 -6.60860 -0.50681 -0.26308 -0.20759 0.66447 0.83459 1.24232 1.36855 1.41004 1.47749 1.54603 2.08600 2.20843 2.52493 2.81737 3.33992 3.40871 3.49836 3.74021 3.88929 4.12405 4.20478 4.34742 4.40355 4.53458 4.65356 4.76671 4.77314 4.80622 4.84490 4.96456 5.06142 5.29299 5.41509 5.55721 5.61750 5.75271 6.00778 6.21567 6.53646 6.56627 6.67246 8.11855 Molecular weight = 320.04amu Principal moments of inertia in cm(-1) A = 0.022953 B = 0.002961 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.609410 B = 9453.689545 C = 9798.999367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.046 3.954 3 Si 0.966 3.034 4 H -0.245 1.245 5 H -0.277 1.277 6 H -0.248 1.248 7 C -0.480 4.480 8 H 0.055 0.945 9 C 0.066 3.934 10 C -0.216 4.216 11 C -0.081 4.081 12 C -0.169 4.169 13 C -0.102 4.102 14 C 0.516 3.484 15 O -0.521 6.521 16 O -0.279 6.279 17 C 0.033 3.967 18 C -0.090 4.090 19 C -0.037 4.037 20 Cl -0.041 7.041 21 C -0.061 4.061 22 C -0.117 4.117 23 C 0.080 3.920 24 F -0.138 7.138 25 C -0.157 4.157 26 H 0.298 0.702 27 H 0.113 0.887 28 H 0.152 0.848 29 H 0.144 0.856 30 H 0.154 0.846 31 H 0.190 0.810 32 H 0.188 0.812 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.252 -7.405 0.736 23.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.170 4.170 3 Si 0.789 3.211 4 H -0.170 1.170 5 H -0.204 1.204 6 H -0.172 1.172 7 C -0.509 4.509 8 H 0.073 0.927 9 C 0.064 3.936 10 C -0.236 4.236 11 C -0.099 4.099 12 C -0.188 4.188 13 C -0.103 4.103 14 C 0.364 3.636 15 O -0.410 6.410 16 O -0.194 6.194 17 C -0.009 4.009 18 C -0.109 4.109 19 C -0.064 4.064 20 Cl -0.012 7.012 21 C -0.079 4.079 22 C -0.135 4.135 23 C 0.060 3.940 24 F -0.116 7.116 25 C -0.177 4.177 26 H 0.108 0.892 27 H 0.131 0.869 28 H 0.169 0.831 29 H 0.162 0.838 30 H 0.172 0.828 31 H 0.207 0.793 32 H 0.205 0.795 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 21.885 -7.578 1.088 23.186 hybrid contribution -0.763 0.421 0.141 0.883 sum 21.122 -7.157 1.230 22.335 Atomic orbital electron populations 1.69699 1.09334 1.31942 1.35728 1.26931 0.95471 1.04469 0.90125 0.85501 0.79654 0.75826 0.80153 1.16991 1.20393 1.17172 1.19478 0.93858 0.95881 1.41667 0.92658 1.17703 0.92590 0.92141 0.91212 1.21490 0.97185 1.02408 1.02474 1.21049 0.92312 0.97994 0.98512 1.21087 1.00550 0.96119 1.01064 1.18824 0.91894 0.96357 1.03208 1.22125 0.80198 0.84048 0.77227 1.90785 1.75824 1.39680 1.34711 1.84753 1.21575 1.42764 1.70288 1.18709 0.97947 0.87521 0.96754 1.21141 0.95882 1.00404 0.93425 1.20800 0.98257 0.95460 0.91843 1.98402 1.70594 1.98267 1.33941 1.21455 0.97301 0.97152 0.92034 1.21444 0.95921 0.98183 0.97975 1.18453 0.95751 0.94798 0.85024 1.91520 1.75743 1.96521 1.47858 1.21161 0.91658 1.02022 1.02836 0.89165 0.86902 0.83081 0.83837 0.82800 0.79326 0.79480 0.88172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.14 13.93 21.83 0.30 -44.83 16 2 C 0.05 2.38 5.43 85.26 0.46 2.84 16 3 Si 0.97 40.20 24.42 68.60 1.67 41.87 16 4 H -0.25 -9.23 6.65 99.48 0.66 -8.57 16 5 H -0.28 -10.91 7.11 99.48 0.71 -10.21 16 6 H -0.25 -10.46 6.76 99.48 0.67 -9.78 16 7 C -0.48 -26.75 9.59 23.47 0.23 -26.53 16 8 H 0.06 3.36 8.06 -2.91 -0.02 3.34 16 9 C 0.07 3.34 5.18 -21.32 -0.11 3.23 16 10 C -0.22 -9.54 7.11 22.77 0.16 -9.38 16 11 C -0.08 -2.98 10.01 22.17 0.22 -2.76 16 12 C -0.17 -6.28 9.62 22.71 0.22 -6.06 16 13 C -0.10 -4.36 5.87 -20.15 -0.12 -4.48 16 14 C 0.52 20.96 7.83 70.34 0.55 21.51 16 15 O -0.52 -23.42 16.12 19.90 0.32 -23.10 16 16 O -0.28 -9.60 9.12 -0.15 0.00 -9.60 16 17 C 0.03 0.98 4.94 22.54 0.11 1.09 16 18 C -0.09 -2.14 9.77 22.38 0.22 -1.92 16 19 C -0.04 -0.67 6.32 22.31 0.14 -0.53 16 20 Cl -0.04 -0.66 28.95 -2.72 -0.08 -0.74 16 21 C -0.06 -0.84 9.82 22.30 0.22 -0.62 16 22 C -0.12 -1.94 10.02 22.29 0.22 -1.72 16 23 C 0.08 2.10 7.31 22.46 0.16 2.26 16 24 F -0.14 -4.20 17.11 44.97 0.77 -3.43 16 25 C -0.16 -7.68 9.34 23.02 0.21 -7.46 16 26 H 0.30 14.18 8.30 -92.71 -0.77 13.41 16 27 H 0.11 4.81 4.26 -2.91 -0.01 4.79 16 28 H 0.15 4.24 8.06 -2.91 -0.02 4.21 16 29 H 0.14 4.43 7.59 -2.91 -0.02 4.41 16 30 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 31 H 0.19 1.11 8.06 -2.91 -0.02 1.09 16 32 H 0.19 1.79 8.06 -2.91 -0.02 1.77 16 33 H 0.10 5.11 7.64 -2.91 -0.02 5.09 16 Total: -1.00 -64.36 316.39 6.99 -57.37 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 1.10 Total: 12.98 kcal Atomic # 6 Polarization: -33.43 SS G_CDS: 2.90 Total: -30.52 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: 0.30 Total: -44.83 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: 0.32 Total: -32.70 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.77 Total: -3.43 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 1.67 Total: 41.87 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -0.08 Total: -0.74 kcal Total: -64.36 6.99 -57.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735454912.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.340 kcal (2) G-P(sol) polarization free energy of solvation -64.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds